Rmu_sc0000617.1_g000035

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000617.1
N/A
Physical Location & Seq
Forward (+)
149639 .. 149953
315 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
atgtcgaatgaacatagactcgactttcccatgcttgactcaacatgctcggattaccacagttgggtaaccaatgttgagaactacctcacttcaaagggaatattacccataatccaagcaccaaacccggatcgtgtgttcgtgcgaacacctacaaagcatgctcaagcagttatcttgatgcgacgccatatagacaaggcactcacattggagtatatgtcgatcaaggatgcaagagagctatgggtagcgctagaagaacgctttggcaatgtccaagattccctcctcccttacttgaaggtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

12.1

Weight (kDa)

6.4

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 190
AfeI AGCGCT 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 96, 307
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
AlwI GGATC 1 cut(s) 141
Aor51HI AGCGCT 1 cut(s) 258
AspLEI GCGC 1 cut(s) 259
AsuC2I CCSGG 1 cut(s) 131
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 1 cut(s) 260
BfoI RGCGCY 1 cut(s) 260
Bme1390I CCNGG 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 2 cut(s) 174, 226
BpuEI CTTGAG 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 283
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 284
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 64
Bsp143I GATC 2 cut(s) 133, 228
BspPI GGATC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 283
BssMI GATC 2 cut(s) 133, 228
BssNI GRCGYC 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 165
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 241
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 2 cut(s) 136, 231
BstMBI GATC 2 cut(s) 133, 228
BstNSI RCATGY 2 cut(s) 48, 167
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 1 cut(s) 259
CseI GACGC 1 cut(s) 198
CviAII CATG 3 cut(s) 31, 45, 164
CviJI RGCY 1 cut(s) 247
CviKI_1 RGCY 1 cut(s) 247
DpnI GATC 2 cut(s) 135, 230
DpnII GATC 2 cut(s) 133, 228
Eco47III AGCGCT 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
FaeI CATG 3 cut(s) 34, 48, 167
FatI CATG 3 cut(s) 30, 44, 163
FokI GGATG 1 cut(s) 248
FspBI CTAG 1 cut(s) 260
GlaI GCGC 1 cut(s) 258
HaeII RGCGCY 1 cut(s) 260
HapII CCGG 1 cut(s) 131
HgaI GACGC 1 cut(s) 198
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 190
Hin1II CATG 3 cut(s) 34, 48, 167
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 3 cut(s) 18, 38, 287
HpaII CCGG 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 190
Hsp92II CATG 3 cut(s) 34, 48, 167
HspAI GCGC 1 cut(s) 257
Kzo9I GATC 2 cut(s) 133, 228
LpnPI CCDG 1 cut(s) 144
LweI GCATC 2 cut(s) 174, 226
MaeI CTAG 1 cut(s) 260
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 135, 230
MboI GATC 2 cut(s) 133, 228
MboII GAAGA 1 cut(s) 275
MlyI GAGTC 2 cut(s) 12, 32
MnlI CCTC 3 cut(s) 98, 302, 305
MseI TTAA 1 cut(s) 313
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 131
NciI CCSGG 1 cut(s) 131
NdeII GATC 2 cut(s) 133, 228
NlaIII CATG 3 cut(s) 34, 48, 167
NspI RCATGY 2 cut(s) 48, 167
PaeI GCATGC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 287
PleI GAGTC 2 cut(s) 12, 32
PpsI GAGTC 2 cut(s) 12, 32
PspEI GGTNACC 1 cut(s) 67
SaqAI TTAA 1 cut(s) 313
Sau3AI GATC 2 cut(s) 133, 228
SchI GAGTC 2 cut(s) 12, 32
ScrFI CCNGG 1 cut(s) 131
SetI ASST 4 cut(s) 90, 157, 249, 312
SfaNI GCATC 2 cut(s) 174, 226
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 167
SspI AATATT 1 cut(s) 105
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 3 cut(s) 5, 21, 227
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TspDTI ATGAA 1 cut(s) 24
XceI RCATGY 2 cut(s) 48, 167
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.