Rmu_sc0000623.1_g000004

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000623.1
N/A
Physical Location & Seq
Forward (+)
16611 .. 17216
606 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 606 bp
atgatgtctgccgctgccttgcaaatccaaactctggaagatgaggattcacaatggggtggttcttcagaaggtcgtacctataaggctagagatcgagagctgatggatattcgactcaaaactcaatacttcacgaatctgtgcaggtatgaatcaaacatatttcgtaggcgatatagaatgcaaccttgggtctttgacaggatgatgcgcgacgtggacaactacgacccatattttgttcaaataagagatgcttgtgggagactcagcttatccactgaacaaaagctgacatgcgccatgagaatgctcgcgtatgacatcacagctgatttctgcgatgattacctagatattgcgaagaccactgccattgagatttttgagcacttcacaaaagcaatatggaatgtgtatcatgagacttacctccaccgaccaacaccggcagattgcgacggctgcttgaaaaagctgcagaactgggattttcggggatggtcggtagccttgattgtatgtactggcaatggaaaaattgtcccaccagatgggcagggcagtatactagctacaaggggaaaccgacaatcatcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

201

Amino Acids

23.42

Weight (kDa)

6.31

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 138
AccB7I CCANNNNNTGG 2 cut(s) 34, 557
AccI GTMKAC 1 cut(s) 571
AccII CGCG 2 cut(s) 216, 320
AciI CCGC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 2 cut(s) 79, 529
AfiI CCNNNNNNNGG 2 cut(s) 34, 557
AgsI TTSAA 2 cut(s) 248, 475
AjiI CACGTC 1 cut(s) 220
AjuI GAANNNNNNNTTGG 2 cut(s) 175, 207
AluBI AGCT 6 cut(s) 103, 276, 295, 335, 481, 578
AluI AGCT 6 cut(s) 103, 276, 295, 335, 481, 578
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 2 cut(s) 262, 422
ApeKI GCWGC 3 cut(s) 14, 468, 481
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspLEI GCGC 2 cut(s) 216, 305
BbsI GAAGAC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 455, 468
BccI CCATC 3 cut(s) 100, 498, 551
BceAI ACGGC 1 cut(s) 481
BcoDI GTCTC 2 cut(s) 262, 422
BfaI CTAG 3 cut(s) 90, 356, 575
BfmI CTRYAG 1 cut(s) 482
BfuAI ACCTGC 1 cut(s) 138
BisI GCNGC 4 cut(s) 12, 15, 469, 482
BlsI GCNGC 4 cut(s) 13, 16, 470, 483
BmgBI CACGTC 1 cut(s) 220
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 2 cut(s) 201, 247
BmuI ACTGGG 1 cut(s) 499
BpiI GAAGAC 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 191
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 557
Bse118I RCCGGY 1 cut(s) 451
Bse1I ACTGG 2 cut(s) 494, 535
Bse3DI GCAATG 1 cut(s) 541
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 2 cut(s) 213, 509
BseLI CCNNNNNNNGG 2 cut(s) 34, 557
BseMI GCAATG 1 cut(s) 541
BseMII CTCAG 1 cut(s) 286
BseNI ACTGG 2 cut(s) 494, 535
BseXI GCAGC 2 cut(s) 455, 468
BsgI GTGCAG 1 cut(s) 166
Bsh1236I CGCG 2 cut(s) 216, 320
BsiHKAI GWGCWC 1 cut(s) 396
BsiSI CCGG 1 cut(s) 452
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 2 cut(s) 34, 557
BsmAI GTCTC 2 cut(s) 262, 422
BsmFI GGGAC 1 cut(s) 533
BsmI GAATGC 2 cut(s) 189, 318
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 285
BspFNI CGCG 2 cut(s) 216, 320
BspHI TCATGA 1 cut(s) 424
BspMAI CTGCAG 1 cut(s) 486
BspMI ACCTGC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 541
BsrFI RCCGGY 1 cut(s) 451
BsrI ACTGG 2 cut(s) 494, 535
BssAI RCCGGY 1 cut(s) 451
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 1 cut(s) 94
BssNAI GTATAC 1 cut(s) 572
BssT1I CCWWGG 1 cut(s) 191
Bst1107I GTATAC 1 cut(s) 572
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 272, 603
BstF5I GGATG 2 cut(s) 213, 509
BstFNI CGCG 2 cut(s) 216, 320
BstHHI GCGC 2 cut(s) 216, 305
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 2 cut(s) 262, 422
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 468
BstNSI RCATGY 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 482
BstUI CGCG 2 cut(s) 216, 320
BstV1I GCAGC 2 cut(s) 455, 468
BstV2I GAAGAC 1 cut(s) 374
BstZ17I GTATAC 1 cut(s) 572
BtgZI GCGATG 1 cut(s) 360
BtrI CACGTC 1 cut(s) 220
BtsCI GGATG 2 cut(s) 213, 509
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 2 cut(s) 282, 372
BveI ACCTGC 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 318
CciI TCATGA 1 cut(s) 424
CfoI GCGC 2 cut(s) 216, 305
Cfr10I RCCGGY 1 cut(s) 451
Csp6I GTAC 2 cut(s) 78, 528
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 3 cut(s) 300, 307, 425
CviJI RGCY 9 cut(s) 89, 103, 276, 295, 335, 468, 481, 515, 578
CviKI_1 RGCY 9 cut(s) 89, 103, 276, 295, 335, 468, 481, 515, 578
CviQI GTAC 2 cut(s) 78, 528
DdeI CTNAG 2 cut(s) 272, 603
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 191
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 3 cut(s) 303, 310, 428
FalI AAGNNNNNCTT 2 cut(s) 244, 276
FaqI GGGAC 1 cut(s) 533
FatI CATG 3 cut(s) 299, 306, 424
FblI GTMKAC 1 cut(s) 571
Fnu4HI GCNGC 4 cut(s) 12, 15, 469, 482
FokI GGATG 2 cut(s) 220, 516
Fsp4HI GCNGC 4 cut(s) 12, 15, 469, 482
FspBI CTAG 3 cut(s) 90, 356, 575
GlaI GCGC 2 cut(s) 215, 304
GluI GCNGC 4 cut(s) 12, 15, 469, 482
HapII CCGG 1 cut(s) 452
HhaI GCGC 2 cut(s) 216, 305
Hin1II CATG 3 cut(s) 303, 310, 428
Hin6I GCGC 2 cut(s) 214, 303
HinP1I GCGC 2 cut(s) 214, 303
HinfI GANTC 5 cut(s) 47, 117, 139, 155, 270
HpaII CCGG 1 cut(s) 452
Hpy166II GTNNAC 2 cut(s) 223, 572
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 4 cut(s) 35, 98, 136, 425
Hpy8I GTNNAC 2 cut(s) 223, 572
Hpy99I CGWCG 2 cut(s) 221, 467
HpyAV CCTTC 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 4 cut(s) 22, 147, 187, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 468
HpyF3I CTNAG 2 cut(s) 272, 603
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 3 cut(s) 303, 310, 428
HspAI GCGC 2 cut(s) 214, 303
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 8 cut(s) 20, 133, 190, 465, 475, 516, 548, 567
Lsp1109I GCAGC 2 cut(s) 455, 468
LweI GCATC 2 cut(s) 201, 247
MaeI CTAG 3 cut(s) 90, 356, 575
MaeII ACGT 1 cut(s) 219
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 3 cut(s) 50, 57, 379
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 1 cut(s) 543
MlyI GAGTC 2 cut(s) 111, 264
MnlI CCTC 2 cut(s) 37, 446
MslI CAYNNNNRTG 1 cut(s) 311
MspA1I CMGCKG 2 cut(s) 14, 335
MspI CCGG 1 cut(s) 452
Mva1269I GAATGC 2 cut(s) 189, 318
MvnI CGCG 2 cut(s) 216, 320
MwoI GCNNNNNNNGC 1 cut(s) 468
NdeII GATC 1 cut(s) 94
NlaIII CATG 3 cut(s) 303, 310, 428
NspI RCATGY 1 cut(s) 303
PagI TCATGA 1 cut(s) 424
PctI GAATGC 2 cut(s) 189, 318
PfeI GAWTC 3 cut(s) 47, 139, 155
PflMI CCANNNNNTGG 2 cut(s) 34, 557
PkrI GCNGC 4 cut(s) 13, 16, 470, 483
PleI GAGTC 2 cut(s) 111, 264
PpsI GAGTC 2 cut(s) 111, 264
PstI CTGCAG 1 cut(s) 486
PvuII CAGCTG 1 cut(s) 335
RsaI GTAC 2 cut(s) 79, 529
RsaNI GTAC 2 cut(s) 78, 528
RseI CAYNNNNRTG 1 cut(s) 311
SatI GCNGC 4 cut(s) 12, 15, 469, 482
Sau3AI GATC 1 cut(s) 94
SchI GAGTC 2 cut(s) 111, 264
SduI GDGCHC 1 cut(s) 396
SfaNI GCATC 2 cut(s) 201, 247
SfcI CTRYAG 1 cut(s) 482
SmiMI CAYNNNNRTG 1 cut(s) 311
Sse9I AATT 1 cut(s) 543
SsiI CCGC 1 cut(s) 12
SspMI CTAG 3 cut(s) 90, 356, 575
StyI CCWWGG 1 cut(s) 191
TaiI ACGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 97, 115
TasI AATT 1 cut(s) 543
TatI WGTACW 1 cut(s) 527
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 3 cut(s) 47, 139, 155
TscAI CASTG 2 cut(s) 289, 379
TseI GCWGC 3 cut(s) 14, 468, 481
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 2 cut(s) 289, 379
Van91I CCANNNNNTGG 2 cut(s) 34, 557
XceI RCATGY 1 cut(s) 303
XmiI GTMKAC 1 cut(s) 571
XspI CTAG 3 cut(s) 90, 356, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.