Rmu_sc0000629.1_g000010

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000629.1
N/A
Physical Location & Seq
Reverse (-)
43604 .. 45336
1733 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 549 bp
atgtttgcttctacttccttggatgtcgaagcagtagagttgacccttactgtgattcaaccttctgttactagtgagatgaatcaactactttgtgcgcaatatacagtgggagaggtgcggtctgccttgttccaaatgtatctgacgaagtctctaggaccggatggtatgcctcctccattttttcaacactattgggatacaataggtgttgatgttactgaagttgtccagagcttcctgcattcgggcttcaaatcctgctccatgattgcacaattgtatacggctcgttattttccggatggcaatttttggaatgcttctgaacatgctactccttcctattcttggcgtagcatctttgctactaaggatctccttcatgcaggttccttatggaaaattggagatggagctagtgtatctgtctggaaagattcatggattccttctcacaagccgcaacccatgccgcaacccatgattggtgcaagtactgatatggaaattgttagtgatcttattgaacctcccaatgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

182

Amino Acids

20.2

Weight (kDa)

4.76

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 99
Acc36I ACCTGC 1 cut(s) 383
AccI GTMKAC 1 cut(s) 287
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 3 cut(s) 121, 467, 479
AclWI GGATC 1 cut(s) 387
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 1 cut(s) 502
AfiI CCNNNNNNNGG 3 cut(s) 250, 354, 491
AgsI TTSAA 4 cut(s) 59, 191, 259, 533
AhlI ACTAGT 1 cut(s) 71
AluBI AGCT 2 cut(s) 240, 422
AluI AGCT 2 cut(s) 240, 422
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 1 cut(s) 387
Aor13HI TCCGGA 1 cut(s) 304
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 1 cut(s) 161
AvaII GGWCC 1 cut(s) 161
BccI CCATC 3 cut(s) 161, 302, 410
BceAI ACGGC 1 cut(s) 306
BciVI GTATCC 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 159
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 3 cut(s) 72, 158, 423
BfuAI ACCTGC 1 cut(s) 383
BfuI GTATCC 1 cut(s) 196
BisI GCNGC 2 cut(s) 467, 479
BlsI GCNGC 2 cut(s) 468, 480
BmcAI AGTACT 1 cut(s) 502
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 397
BmsI GCATC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 18
BsaWI WCCGGW 2 cut(s) 163, 304
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 3 cut(s) 250, 354, 491
BseAI TCCGGA 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 3 cut(s) 28, 172, 313
BseLI CCNNNNNNNGG 3 cut(s) 250, 354, 491
BseRI GAGGAG 1 cut(s) 168
BsiSI CCGG 2 cut(s) 164, 305
BslI CCNNNNNNNGG 3 cut(s) 250, 354, 491
BsmAI GTCTC 1 cut(s) 159
BsmI GAATGC 2 cut(s) 247, 328
Bsp13I TCCGGA 1 cut(s) 304
Bsp143I GATC 2 cut(s) 379, 523
BspACI CCGC 3 cut(s) 121, 467, 479
BspEI TCCGGA 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 397
BspMI ACCTGC 1 cut(s) 383
BspPI GGATC 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 2 cut(s) 379, 523
BssNAI GTATAC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 18
Bst1107I GTATAC 1 cut(s) 288
Bst4CI ACNGT 2 cut(s) 52, 109
BstAPI GCANNNNNTGC 1 cut(s) 475
BstDEI CTNAG 1 cut(s) 375
BstF5I GGATG 3 cut(s) 28, 172, 313
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 2 cut(s) 382, 526
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 2 cut(s) 379, 523
BstMWI GCNNNNNNNGC 1 cut(s) 475
BstNSI RCATGY 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BstZ17I GTATAC 1 cut(s) 288
BsuI GTATCC 1 cut(s) 196
BtsCI GGATG 3 cut(s) 28, 172, 313
BtsIMutI CAGTG 1 cut(s) 114
BveI ACCTGC 1 cut(s) 383
CfoI GCGC 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 501
CviAII CATG 6 cut(s) 271, 335, 389, 447, 475, 487
CviJI RGCY 5 cut(s) 240, 255, 293, 422, 466
CviKI_1 RGCY 5 cut(s) 240, 255, 293, 422, 466
CviQI GTAC 1 cut(s) 501
DdeI CTNAG 1 cut(s) 375
DpnI GATC 2 cut(s) 381, 525
DpnII GATC 2 cut(s) 379, 523
Eco130I CCWWGG 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 6 cut(s) 274, 338, 392, 450, 478, 490
FatI CATG 6 cut(s) 270, 334, 388, 446, 474, 486
FblI GTMKAC 1 cut(s) 287
Fnu4HI GCNGC 2 cut(s) 467, 479
FokI GGATG 3 cut(s) 35, 179, 320
Fsp4HI GCNGC 2 cut(s) 467, 479
FspBI CTAG 3 cut(s) 72, 158, 423
FspI TGCGCA 1 cut(s) 99
GlaI GCGC 1 cut(s) 99
GluI GCNGC 2 cut(s) 467, 479
HapII CCGG 2 cut(s) 164, 305
HhaI GCGC 1 cut(s) 100
Hin1II CATG 6 cut(s) 274, 338, 392, 450, 478, 490
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 4 cut(s) 55, 82, 443, 451
HpaII CCGG 2 cut(s) 164, 305
Hpy166II GTNNAC 2 cut(s) 42, 288
Hpy188I TCNGA 2 cut(s) 147, 331
Hpy188III TCNNGA 3 cut(s) 235, 305, 436
Hpy8I GTNNAC 2 cut(s) 42, 288
HpyAV CCTTC 4 cut(s) 72, 354, 395, 465
HpyCH4III ACNGT 2 cut(s) 52, 109
HpyCH4V TGCA 4 cut(s) 247, 278, 392, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 475
HpyF3I CTNAG 1 cut(s) 375
Hsp92II CATG 6 cut(s) 274, 338, 392, 450, 478, 490
HspAI GCGC 1 cut(s) 98
Kpn2I TCCGGA 1 cut(s) 304
Kzo9I GATC 2 cut(s) 379, 523
LmnI GCTCC 2 cut(s) 272, 419
LpnPI CCDG 7 cut(s) 177, 248, 257, 277, 318, 378, 421
LweI GCATC 1 cut(s) 372
MaeI CTAG 3 cut(s) 72, 158, 423
MaeIII GTNAC 2 cut(s) 67, 220
MalI GATC 2 cut(s) 381, 525
MboI GATC 2 cut(s) 379, 523
MfeI CAATTG 1 cut(s) 281
MflI RGATCY 1 cut(s) 379
MluCI AATT 4 cut(s) 281, 313, 408, 513
MnlI CCTC 4 cut(s) 109, 186, 189, 546
MroI TCCGGA 1 cut(s) 304
MspI CCGG 2 cut(s) 164, 305
MunI CAATTG 1 cut(s) 281
Mva1269I GAATGC 2 cut(s) 247, 328
MwoI GCNNNNNNNGC 1 cut(s) 475
NdeII GATC 2 cut(s) 379, 523
NlaIII CATG 6 cut(s) 274, 338, 392, 450, 478, 490
NlaIV GGNNCC 1 cut(s) 397
NsbI TGCGCA 1 cut(s) 99
NspI RCATGY 1 cut(s) 338
PctI GAATGC 2 cut(s) 247, 328
PfeI GAWTC 4 cut(s) 55, 82, 443, 451
PflFI GACNNNGTC 1 cut(s) 151
PkrI GCNGC 2 cut(s) 468, 480
PspN4I GGNNCC 1 cut(s) 397
PspPI GGNCC 1 cut(s) 161
PsuI RGATCY 1 cut(s) 379
PsyI GACNNNGTC 1 cut(s) 151
RsaI GTAC 1 cut(s) 502
RsaNI GTAC 1 cut(s) 501
SatI GCNGC 2 cut(s) 467, 479
Sau3AI GATC 2 cut(s) 379, 523
Sau96I GGNCC 1 cut(s) 161
ScaI AGTACT 1 cut(s) 502
SetI ASST 7 cut(s) 64, 120, 214, 242, 397, 424, 538
SfaNI GCATC 1 cut(s) 372
SinI GGWCC 1 cut(s) 161
SpeI ACTAGT 1 cut(s) 71
Sse9I AATT 4 cut(s) 281, 313, 408, 513
SsiI CCGC 3 cut(s) 121, 467, 479
SspMI CTAG 3 cut(s) 72, 158, 423
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 52, 109
TaqI TCGA 1 cut(s) 27
TasI AATT 4 cut(s) 281, 313, 408, 513
TatI WGTACW 1 cut(s) 500
TauI GCSGC 2 cut(s) 469, 481
TfiI GAWTC 4 cut(s) 55, 82, 443, 451
TscAI CASTG 1 cut(s) 114
TspDTI ATGAA 3 cut(s) 95, 377, 435
TspRI CASTG 1 cut(s) 114
Tth111I GACNNNGTC 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 161
XceI RCATGY 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 287
XspI CTAG 3 cut(s) 72, 158, 423
ZrmI AGTACT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.