Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000633.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

38132 .. 38506

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atggtttggtgctgtgtgatcataaaacgacatcgtttttgttcagtgctgttactgaaccgtttttttggtgcggttcgggtcggtaaccgcatttttggtacaaaatgcccacccctaccagcagcaatggtgccaaagttcgatccctctcaggtcattgaagtctccgtccgtgtcattggcggcaaagccggcgcggtgggttcaatcgcttccaagatcggtcctcccggtctatccccgaagaagattgcagaagagatagctgaggaaaccgccaaggagttttcaggttctgcgtgtcaccgtgcaaccaaccgatacgcacgtgccgaaggacctcggcacgtgcatcagttcgttgcacggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

124

Amino Acids

13.45

Weight (kDa)

10.14

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	56 - 95	4.2e-07	Ribosomal protein L11, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	133
AccII	CGCG	1 cut(s)	200
AciI	CCGC	5 cut(s)	74, 91, 186, 200, 279
AclWI	GGATC	1 cut(s)	140
AcvI	CACGTG	2 cut(s)	332, 352
AfaI	GTAC	1 cut(s)	103
AgsI	TTSAA	2 cut(s)	164, 210
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	140
AlwNI	CAGNNNCTG	1 cut(s)	299
ApeKI	GCWGC	1 cut(s)	125
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	227, 341
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	2 cut(s)	227, 341
BaeI	ACNNNNGTAYC	2 cut(s)	316, 349
BanI	GGYRCC	1 cut(s)	133
BbrPI	CACGTG	2 cut(s)	332, 352
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	137
BclI	TGATCA	1 cut(s)	18
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	172
BisI	GCNGC	2 cut(s)	126, 187
BlsI	GCNGC	2 cut(s)	127, 188
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	2 cut(s)	227, 341
BmgT120I	GGNCC	2 cut(s)	227, 341
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	364
Bpu10I	CCTNAGC	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	234
BsaAI	YACGTR	2 cut(s)	332, 352
BsaJI	CCNNGG	2 cut(s)	282, 344
Bse118I	RCCGGY	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	282, 344
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	167, 261
BseXI	GCAGC	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	200
BshNI	GGYRCC	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	195, 234
BsmAI	GTCTC	1 cut(s)	172
Bsp143I	GATC	3 cut(s)	18, 145, 222
BspACI	CCGC	5 cut(s)	74, 91, 186, 200, 279
BspCNI	CTCAG	2 cut(s)	166, 262
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	282, 344
BssMI	GATC	3 cut(s)	18, 145, 222
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	3 cut(s)	62, 311, 372
Bst6I	CTCTTC	1 cut(s)	255
BstBAI	YACGTR	2 cut(s)	332, 352
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	153, 270
BstEII	GGTNACC	1 cut(s)	86
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	21, 148, 225
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	3 cut(s)	18, 145, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstPI	GGTNACC	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	232
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	299
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	227, 341
Csp6I	GTAC	1 cut(s)	102
CviJI	RGCY	2 cut(s)	194, 269
CviKI_1	RGCY	2 cut(s)	194, 269
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	2 cut(s)	153, 270
DpnI	GATC	3 cut(s)	20, 147, 224
DpnII	GATC	3 cut(s)	18, 145, 222
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	282
Eco47I	GGWCC	2 cut(s)	227, 341
Eco72I	CACGTG	2 cut(s)	332, 352
Eco91I	GGTNACC	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	341
EcoO65I	GGTNACC	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaiI	YATR	1 cut(s)	23
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	126, 187
Fsp4HI	GCNGC	2 cut(s)	126, 187
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	2 cut(s)	126, 187
HapII	CCGG	2 cut(s)	195, 234
HhaI	GCGC	1 cut(s)	200
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HpaII	CCGG	2 cut(s)	195, 234
HphI	GGTGA	1 cut(s)	299
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	3 cut(s)	62, 311, 372
HpyCH4IV	ACGT	2 cut(s)	331, 351
HpyCH4V	TGCA	4 cut(s)	257, 314, 355, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
HpyF3I	CTNAG	2 cut(s)	153, 270
HpySE526I	ACGT	2 cut(s)	331, 351
HspAI	GCGC	1 cut(s)	198
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	18, 145, 222
LpnPI	CCDG	5 cut(s)	135, 140, 208, 247, 279
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	1 cut(s)	364
MaeII	ACGT	2 cut(s)	331, 351
MaeIII	GTNAC	3 cut(s)	51, 86, 305
MalI	GATC	3 cut(s)	20, 147, 224
MboI	GATC	3 cut(s)	18, 145, 222
MboII	GAAGA	3 cut(s)	259, 262, 272
MnlI	CCTC	4 cut(s)	160, 240, 265, 354
MroNI	GCCGGC	1 cut(s)	194
MspI	CCGG	2 cut(s)	195, 234
MspR9I	CCNGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	195
NaeI	GCCGGC	1 cut(s)	196
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	3 cut(s)	18, 145, 222
NgoMIV	GCCGGC	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	135
NmeAIII	GCCGAG	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PdiI	GCCGGC	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	127, 188
PmaCI	CACGTG	2 cut(s)	332, 352
PmlI	CACGTG	2 cut(s)	332, 352
Ppu21I	YACGTR	2 cut(s)	332, 352
PpuMI	RGGWCCY	1 cut(s)	341
Psp5II	RGGWCCY	1 cut(s)	341
PspCI	CACGTG	2 cut(s)	332, 352
PspEI	GGTNACC	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	227, 341
PspPPI	RGGWCCY	1 cut(s)	341
PstNI	CAGNNNCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
SatI	GCNGC	2 cut(s)	126, 187
Sau3AI	GATC	3 cut(s)	18, 145, 222
Sau96I	GGNCC	2 cut(s)	227, 341
ScrFI	CCNGG	1 cut(s)	234
SetI	ASST	6 cut(s)	159, 271, 298, 334, 346, 354
SfaNI	GCATC	1 cut(s)	364
SinI	GGWCC	2 cut(s)	227, 341
SsiI	CCGC	5 cut(s)	74, 91, 186, 200, 279
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	3 cut(s)	62, 311, 372
TaiI	ACGT	2 cut(s)	334, 354
TaqI	TCGA	1 cut(s)	144
TaqII	GACCGA	1 cut(s)	215
TauI	GCSGC	1 cut(s)	189
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	305
TspGWI	ACGGA	2 cut(s)	160, 164
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	2 cut(s)	227, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.