Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000656.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

37405 .. 39236

Gene Structure 1832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1734 bp

atgcgcctcaggcttcccttcaaaactttacactccttcagccaaaaccgcagactctcatccgaatcaactctcccctatggaacccgtgcgccgctccccgcccatctcttccaaatttgtcgagaacaatgcaggcttatcaagacccagaaagtgtgcggtgaaatgtctgaaagagagctggctcaatcttcaagaacctgcaaggctatccatgcccagggtttgaaatttgaagttgggtcgaaagggttgctaggaaatgctattgtgggttattatgccaagtgtggtaacctgggctatgccgagaaggcatttaattgccttgataacaaggatgtgtttgcttggaactctgtcttgtcgatgtattcaaataagggattgctcgagcaggtttttaactcatttgagtcaatgtggaaatgcaaggttttgccgaatgagttcacgtttgcaatggtcttgtctgcttgcacaagattggggaatatagagtatggtaaacaagttcattgcagtgttattaaggtggggcttgagttgatatcattctgtcaaggtgcacttattgatatgtatgccaagtgcacttgtataagtgatgctcggcagatatttgacagtgcagtggagttggataccgtcgcttggacaacaatgatttcagggtatgttcaagttgggctgcttgaggaagcacttaaagtgtttaaggagatgctgagagttggtggtgttctggaccaagtggcctatgtgactgtcataaatgcttgtgttggtctaggaaggctagatgatgcatgtgacttgttctcgcagatgcccaatccaaatgatgtggcatggaatgtgatgatttctgggcatgcaaagagaggttatgaggtggaagctgttaactttttcctgcaaatgaggaaaggtggtgtaaaaccgacaagatctacactgggaagtcttttaagtgcaatctcaagtttagcagctctagactatgggctgatagttcatgctatggcaataaagcagggagaaaaatcttgtcttgtggaacgcgttggttttgctaaaaatgggtatgcagaagatgcatttaagatctttgatgagatgaagcaatctcatgttgagcctgatgacgtcacatttcttggtgttctcactgcatgtagtcatgcagggaaggtagctgaaggtcgtgagatctttgattctatggtcaattattattctattcaacccagggttgatcatatttgctgcatgcttgatcttctgggcagatggggtttgcttaaagaagcagaggagtttattgataggctagattttgtaccaaattctatgatttgggccacactgcttggtgcttgcaaattacatggagacgacataaggggtcggcgtgcggctgagaaactgaaggagttagaaccacaaagttcgtccccatatgtgctactttctagtatgtgtgctgaatttggaaactggaatgaggctaactctttgaggagggaaatgaaagaaaaaggggggattaagttgcctggatttagttggatttctgtgggacagaggacaaattactttgttgctggggacaagtctcatccaagtgctgctgaaattcatgtcgctttaaagtacttgacagcaataatgaaaggagagggctgtgtttttgatgaaacagattctttgttgcatgaagaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

577

Amino Acids

64.1

Weight (kDa)

6.39

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	114 - 162	4.4e-09	PPR repeat family
PPR_1	PF12854	213 - 243	2.9e-06	PPR repeat
PPR_2	PF13041	216 - 263	3.6e-11	PPR repeat family
PPR	PF01535	218 - 247	1.4e-09	PPR repeat
PPR_2	PF13041	281 - 327	1.2e-08	PPR repeat family
PPR_2	PF13041	358 - 395	4.2e-08	PPR repeat family
E_motif	PF20431	469 - 526	1.1e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1155
Acc36I	ACCTGC	2 cut(s)	212, 391
AccBSI	CCGCTC	1 cut(s)	97
AccII	CGCG	1 cut(s)	1068
AciI	CCGC	5 cut(s)	49, 95, 102, 162, 1421
AcsI	RAATTY	5 cut(s)	117, 233, 1351, 1493, 1641
AcuI	CTGAAG	3 cut(s)	22, 1224, 1454
AcyI	GRCGYC	1 cut(s)	1152
AfaI	GTAC	2 cut(s)	1347, 1661
AfiI	CCNNNNNNNGG	2 cut(s)	223, 657
AflIII	ACRYGT	1 cut(s)	1066
AgsI	TTSAA	7 cut(s)	22, 198, 232, 239, 381, 686, 1250
AjnI	CCWGG	4 cut(s)	222, 300, 1253, 1561
AluBI	AGCT	4 cut(s)	184, 905, 998, 1202
AluI	AGCT	4 cut(s)	184, 905, 998, 1202
Alw21I	GWGCWC	2 cut(s)	574, 599
Alw26I	GTCTC	2 cut(s)	1392, 1626
Alw44I	GTGCAC	2 cut(s)	570, 595
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	2 cut(s)	759, 1365
ApaLI	GTGCAC	2 cut(s)	570, 595
ApeKI	GCWGC	4 cut(s)	694, 995, 1272, 1634
ApoI	RAATTY	5 cut(s)	117, 233, 1351, 1493, 1641
Asp700I	GAANNNNTTC	1 cut(s)	452
AspLEI	GCGC	2 cut(s)	6, 94
AspS9I	GGNCC	2 cut(s)	751, 1365
AsuHPI	GGTGA	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	751
AxyI	CCTNAGG	1 cut(s)	8
BaeGI	GKGCMC	2 cut(s)	574, 599
Bbv12I	GWGCWC	2 cut(s)	574, 599
BbvI	GCAGC	4 cut(s)	681, 1007, 1259, 1621
BccI	CCATC	2 cut(s)	114, 1290
BcgI	CGANNNNNNTGC	4 cut(s)	114, 148, 238, 272
BciT130I	CCWGG	4 cut(s)	224, 302, 1255, 1563
BciVI	GTATCC	1 cut(s)	640
BclI	TGATCA	1 cut(s)	1261
BcoDI	GTCTC	2 cut(s)	1392, 1626
BfaI	CTAG	6 cut(s)	260, 794, 803, 1001, 1337, 1479
BfuAI	ACCTGC	2 cut(s)	212, 391
BfuI	GTATCC	1 cut(s)	640
BglI	GCCNNNNNGGC	1 cut(s)	317
BglII	AGATCT	3 cut(s)	953, 1110, 1215
BisI	GCNGC	6 cut(s)	95, 695, 996, 1273, 1422, 1635
BlsI	GCNGC	6 cut(s)	96, 696, 997, 1274, 1423, 1636
BmcAI	AGTACT	1 cut(s)	1661
Bme1390I	CCNGG	4 cut(s)	224, 302, 1255, 1563
Bme18I	GGWCC	1 cut(s)	751
BmeT110I	CYCGRG	1 cut(s)	395
BmgT120I	GGNCC	2 cut(s)	751, 1365
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	4 cut(s)	224, 302, 1255, 1563
BmrI	ACTGGG	1 cut(s)	971
BmsI	GCATC	5 cut(s)	601, 717, 799, 822, 1090
BmuI	ACTGGG	1 cut(s)	971
BplI	GAGNNNNNCTC	2 cut(s)	1502, 1534
BpuEI	CTTGAG	3 cut(s)	566, 719, 970
BsaHI	GRCGYC	1 cut(s)	1152
BsaJI	CCNNGG	5 cut(s)	222, 223, 301, 1253, 1254
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 657
Bse1I	ACTGG	2 cut(s)	966, 1508
Bse21I	CCTNAGG	1 cut(s)	8
Bse3DI	GCAATG	2 cut(s)	471, 520
BseBI	CCWGG	4 cut(s)	224, 302, 1255, 1563
BseDI	CCNNGG	5 cut(s)	222, 223, 301, 1253, 1254
BseGI	GGATG	3 cut(s)	59, 349, 1624
BseLI	CCNNNNNNNGG	2 cut(s)	223, 657
BseMI	GCAATG	2 cut(s)	471, 520
BseMII	CTCAG	3 cut(s)	22, 722, 1416
BseNI	ACTGG	2 cut(s)	966, 1508
BseRI	GAGGAG	2 cut(s)	1334, 1540
BseSI	GKGCMC	2 cut(s)	574, 599
BseXI	GCAGC	4 cut(s)	681, 1007, 1259, 1621
BseYI	CCCAGC	1 cut(s)	1610
BsgI	GTGCAG	1 cut(s)	654
Bsh1236I	CGCG	1 cut(s)	1068
BshFI	GGCC	2 cut(s)	761, 1367
BsiHKAI	GWGCWC	2 cut(s)	574, 599
BsiHKCI	CYCGRG	1 cut(s)	395
BslFI	GGGAC	3 cut(s)	1444, 1599, 1628
BslI	CCNNNNNNNGG	2 cut(s)	223, 657
BsmAI	GTCTC	2 cut(s)	1392, 1626
BsmBI	CGTCTC	1 cut(s)	1392
BsmFI	GGGAC	3 cut(s)	1444, 1599, 1628
BsnI	GGCC	2 cut(s)	761, 1367
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	574, 599
Bsp143I	GATC	5 cut(s)	953, 1110, 1215, 1261, 1282
BspACI	CCGC	5 cut(s)	49, 95, 102, 162, 1421
BspANI	GGCC	2 cut(s)	761, 1367
BspCNI	CTCAG	3 cut(s)	21, 723, 1417
BspFNI	CGCG	1 cut(s)	1068
BspLI	GGNNCC	1 cut(s)	85
BspMI	ACCTGC	2 cut(s)	212, 391
BsrBI	CCGCTC	1 cut(s)	97
BsrDI	GCAATG	2 cut(s)	471, 520
BsrI	ACTGG	2 cut(s)	966, 1508
BssECI	CCNNGG	5 cut(s)	222, 223, 301, 1253, 1254
BssMI	GATC	5 cut(s)	953, 1110, 1215, 1261, 1282
BssNI	GRCGYC	1 cut(s)	1152
Bst2UI	CCWGG	4 cut(s)	224, 302, 1255, 1563
Bst4CI	ACNGT	3 cut(s)	632, 652, 772
Bst6I	CTCTTC	2 cut(s)	116, 1722
BstACI	GRCGYC	1 cut(s)	1152
BstAPI	GCANNNNNTGC	1 cut(s)	1100
BstC8I	GCNNGC	7 cut(s)	137, 186, 481, 879, 1277, 1384, 1419
BstDEI	CTNAG	3 cut(s)	8, 731, 1425
BstEII	GGTNACC	1 cut(s)	296
BstF5I	GGATG	3 cut(s)	59, 349, 1624
BstFNI	CGCG	1 cut(s)	1068
BstHHI	GCGC	2 cut(s)	6, 94
BstKTI	GATC	5 cut(s)	956, 1113, 1218, 1264, 1285
BstMAI	GTCTC	2 cut(s)	1392, 1626
BstMBI	GATC	5 cut(s)	953, 1110, 1215, 1261, 1282
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 48, 218, 317, 1100
BstNI	CCWGG	4 cut(s)	224, 302, 1255, 1563
BstNSI	RCATGY	4 cut(s)	816, 881, 1182, 1279
BstPI	GGTNACC	1 cut(s)	296
BstSCI	CCNGG	4 cut(s)	222, 300, 1253, 1561
BstSLI	GKGCMC	2 cut(s)	574, 599
BstUI	CGCG	1 cut(s)	1068
BstV1I	GCAGC	4 cut(s)	681, 1007, 1259, 1621
BstX2I	RGATCY	3 cut(s)	953, 1110, 1215
BstYI	RGATCY	3 cut(s)	953, 1110, 1215
Bsu36I	CCTNAGG	1 cut(s)	8
BsuI	GTATCC	1 cut(s)	640
BsuRI	GGCC	2 cut(s)	761, 1367
BtsCI	GGATG	3 cut(s)	59, 349, 1624
BtsI	GCAGTG	4 cut(s)	532, 642, 1173, 1370
BtsIMutI	CAGTG	6 cut(s)	532, 637, 642, 959, 1173, 1370
BveI	ACCTGC	2 cut(s)	212, 391
Cac8I	GCNNGC	7 cut(s)	137, 186, 481, 879, 1277, 1384, 1419
CfoI	GCGC	2 cut(s)	6, 94
Cfr13I	GGNCC	2 cut(s)	751, 1365
Csp6I	GTAC	2 cut(s)	1346, 1660
CspCI	CAANNNNNGTGG	4 cut(s)	831, 866, 1357, 1392
CviQI	GTAC	2 cut(s)	1346, 1660
DdeI	CTNAG	3 cut(s)	8, 731, 1425
DpnI	GATC	5 cut(s)	955, 1112, 1217, 1263, 1284
DpnII	GATC	5 cut(s)	953, 1110, 1215, 1261, 1282
DraI	TTTAAA	1 cut(s)	1656
Eam1104I	CTCTTC	2 cut(s)	116, 1722
EarI	CTCTTC	2 cut(s)	116, 1722
Eco32I	GATATC	1 cut(s)	555
Eco47I	GGWCC	1 cut(s)	751
Eco57I	CTGAAG	3 cut(s)	22, 1224, 1454
Eco81I	CCTNAGG	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	395
Eco91I	GGTNACC	1 cut(s)	296
EcoO65I	GGTNACC	1 cut(s)	296
EcoRII	CCWGG	4 cut(s)	222, 300, 1253, 1561
EcoRV	GATATC	1 cut(s)	555
EcoT22I	ATGCAT	2 cut(s)	814, 1105
Esp3I	CGTCTC	1 cut(s)	1392
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FaqI	GGGAC	3 cut(s)	1444, 1599, 1628
FauI	CCCGC	1 cut(s)	109
FauNDI	CATATG	1 cut(s)	1465
FbaI	TGATCA	1 cut(s)	1261
Fnu4HI	GCNGC	6 cut(s)	95, 695, 996, 1273, 1422, 1635
FokI	GGATG	3 cut(s)	46, 356, 1611
Fsp4HI	GCNGC	6 cut(s)	95, 695, 996, 1273, 1422, 1635
FspBI	CTAG	6 cut(s)	260, 794, 803, 1001, 1337, 1479
GlaI	GCGC	2 cut(s)	5, 93
GluI	GCNGC	6 cut(s)	95, 695, 996, 1273, 1422, 1635
GsaI	CCCAGC	1 cut(s)	1614
HaeIII	GGCC	2 cut(s)	761, 1367
HhaI	GCGC	2 cut(s)	6, 94
Hin1I	GRCGYC	1 cut(s)	1152
Hin6I	GCGC	2 cut(s)	4, 92
HinP1I	GCGC	2 cut(s)	4, 92
HincII	GTYRAC	1 cut(s)	910
HindII	GTYRAC	1 cut(s)	910
HinfI	GANTC	5 cut(s)	54, 65, 419, 1223, 1709
HpaI	GTTAAC	1 cut(s)	910
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	5 cut(s)	456, 512, 572, 597, 910
Hpy188I	TCNGA	2 cut(s)	64, 175
Hpy188III	TCNNGA	6 cut(s)	125, 145, 198, 749, 1001, 1211
Hpy8I	GTNNAC	5 cut(s)	456, 512, 572, 597, 910
Hpy99I	CGWCG	1 cut(s)	656
HpyAV	CCTTC	7 cut(s)	28, 46, 310, 792, 1189, 1199, 1429
HpyCH4III	ACNGT	3 cut(s)	632, 652, 772
HpyCH4IV	ACGT	2 cut(s)	458, 1152
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 48, 218, 317, 1100
HpyF3I	CTNAG	3 cut(s)	8, 731, 1425
HpySE526I	ACGT	2 cut(s)	458, 1152
Hsp92I	GRCGYC	1 cut(s)	1152
HspAI	GCGC	2 cut(s)	4, 92
Ksp22I	TGATCA	1 cut(s)	1261
KspAI	GTTAAC	1 cut(s)	910
Kzo9I	GATC	5 cut(s)	953, 1110, 1215, 1261, 1282
LmnI	GCTCC	1 cut(s)	102
Lsp1109I	GCAGC	4 cut(s)	681, 1007, 1259, 1621
LweI	GCATC	5 cut(s)	601, 717, 799, 822, 1090
MaeI	CTAG	6 cut(s)	260, 794, 803, 1001, 1337, 1479
MaeII	ACGT	2 cut(s)	458, 1152
MaeIII	GTNAC	4 cut(s)	296, 766, 815, 1153
MalI	GATC	5 cut(s)	955, 1112, 1217, 1263, 1284
MbiI	CCGCTC	1 cut(s)	97
MboI	GATC	5 cut(s)	953, 1110, 1215, 1261, 1282
MboII	GAAGA	4 cut(s)	103, 186, 1109, 1277
MflI	RGATCY	3 cut(s)	953, 1110, 1215
MhlI	GDGCHC	2 cut(s)	574, 599
MluCI	AATT	9 cut(s)	117, 233, 325, 1234, 1351, 1388, 1493, 1597, 1641
MluI	ACGCGT	1 cut(s)	1066
MlyI	GAGTC	2 cut(s)	48, 428
MmeI	TCCRAC	2 cut(s)	624, 1553
Mph1103I	ATGCAT	2 cut(s)	814, 1105
MroXI	GAANNNNTTC	1 cut(s)	452
MslI	CAYNNNNRTG	2 cut(s)	525, 1629
MspR9I	CCNGG	4 cut(s)	224, 302, 1255, 1563
MvaI	CCWGG	4 cut(s)	224, 302, 1255, 1563
MvnI	CGCG	1 cut(s)	1068
MwoI	GCNNNNNNNGC	5 cut(s)	10, 48, 218, 317, 1100
NdeI	CATATG	1 cut(s)	1465
NdeII	GATC	5 cut(s)	953, 1110, 1215, 1261, 1282
NlaIV	GGNNCC	1 cut(s)	85
NmeAIII	GCCGAG	2 cut(s)	337, 595
NmuCI	GTSAC	3 cut(s)	766, 815, 1153
NsiI	ATGCAT	2 cut(s)	814, 1105
NspI	RCATGY	4 cut(s)	816, 881, 1182, 1279
PaeI	GCATGC	2 cut(s)	881, 1279
PaeR7I	CTCGAG	1 cut(s)	395
PasI	CCCWGGG	2 cut(s)	223, 1254
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	3 cut(s)	65, 1223, 1709
PkrI	GCNGC	6 cut(s)	96, 696, 997, 1274, 1423, 1636
PleI	GAGTC	2 cut(s)	48, 427
PpsI	GAGTC	2 cut(s)	48, 427
Psp6I	CCWGG	4 cut(s)	222, 300, 1253, 1561
PspEI	GGTNACC	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	1610
PspGI	CCWGG	4 cut(s)	222, 300, 1253, 1561
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	2 cut(s)	751, 1365
PspXI	VCTCGAGB	1 cut(s)	395
PsuI	RGATCY	3 cut(s)	953, 1110, 1215
RsaI	GTAC	2 cut(s)	1347, 1661
RsaNI	GTAC	2 cut(s)	1346, 1660
RseI	CAYNNNNRTG	2 cut(s)	525, 1629
SatI	GCNGC	6 cut(s)	95, 695, 996, 1273, 1422, 1635
Sau3AI	GATC	5 cut(s)	953, 1110, 1215, 1261, 1282
Sau96I	GGNCC	2 cut(s)	751, 1365
ScaI	AGTACT	1 cut(s)	1661
SchI	GAGTC	2 cut(s)	48, 428
ScrFI	CCNGG	4 cut(s)	224, 302, 1255, 1563
SduI	GDGCHC	2 cut(s)	574, 599
SfaNI	GCATC	5 cut(s)	601, 717, 799, 822, 1090
Sfr274I	CTCGAG	1 cut(s)	395
SinI	GGWCC	1 cut(s)	751
SlaI	CTCGAG	1 cut(s)	395
SmiMI	CAYNNNNRTG	2 cut(s)	525, 1629
SmlI	CTYRAG	4 cut(s)	395, 545, 698, 985
SmoI	CTYRAG	4 cut(s)	395, 545, 698, 985
SphI	GCATGC	2 cut(s)	881, 1279
Sse9I	AATT	9 cut(s)	117, 233, 325, 1234, 1351, 1388, 1493, 1597, 1641
SsiI	CCGC	5 cut(s)	49, 95, 102, 162, 1421
SspMI	CTAG	6 cut(s)	260, 794, 803, 1001, 1337, 1479
StyD4I	CCNGG	4 cut(s)	222, 300, 1253, 1561
TaaI	ACNGT	3 cut(s)	632, 652, 772
TaiI	ACGT	2 cut(s)	461, 1155
TaqI	TCGA	4 cut(s)	124, 248, 371, 396
TasI	AATT	9 cut(s)	117, 233, 325, 1234, 1351, 1388, 1493, 1597, 1641
TatI	WGTACW	1 cut(s)	1659
TauI	GCSGC	2 cut(s)	97, 1424
TfiI	GAWTC	3 cut(s)	65, 1223, 1709
TscAI	CASTG	6 cut(s)	532, 637, 642, 966, 1180, 1377
TseFI	GTSAC	3 cut(s)	766, 815, 1153
TseI	GCWGC	4 cut(s)	694, 995, 1272, 1634
Tsp45I	GTSAC	3 cut(s)	766, 815, 1153
TspDTI	ATGAA	7 cut(s)	509, 1010, 1139, 1550, 1634, 1691, 1716
TspRI	CASTG	6 cut(s)	532, 637, 642, 966, 1180, 1377
VneI	GTGCAC	2 cut(s)	570, 595
VpaK11BI	GGWCC	1 cut(s)	751
XapI	RAATTY	5 cut(s)	117, 233, 1351, 1493, 1641
XbaI	TCTAGA	1 cut(s)	1000
XceI	RCATGY	4 cut(s)	816, 881, 1182, 1279
XhoI	CTCGAG	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	6 cut(s)	260, 794, 803, 1001, 1337, 1479
ZraI	GACGTC	1 cut(s)	1153
ZrmI	AGTACT	1 cut(s)	1661
Zsp2I	ATGCAT	2 cut(s)	814, 1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.