Rmu_sc0000656.1_g000030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000656.1
N/A
Physical Location & Seq
Reverse (-)
95270 .. 95692
423 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 423 bp
atgtcgaatgaaccaagactcaactttcccatgcttgactcaacaggttcggaataccatagttgggtgaccgatgttgagaaccacctcacttctttgagaatattacccataatccggctaccaaatcaggaactcgttttcgagcctacagccactaagcatgctcgagcagtcatcctgatgcgacaacacatggataaatcacttcgtttggagtacatgtcgatcaaagatgcaagagaattatgggtagcgctaaaagagcgttttgacaatgtccaagattccctcttccctgatttgaaggtccaatggagcaatcttcttgttgtggacttcaaaattgttgctgaatataattcaaaagctcttcgcctcaaatccatgttgaggttttgtggacagcctgtcatagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

140

Amino Acids

16.41

Weight (kDa)

6.91

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 221
AfeI AGCGCT 1 cut(s) 258
AfiI CCNNNNNNNGG 3 cut(s) 64, 117, 393
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 3 cut(s) 307, 343, 366
AhdI GACNNNNNGTC 1 cut(s) 410
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
Ama87I CYCGRG 1 cut(s) 168
Aor51HI AGCGCT 1 cut(s) 258
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 168
AvaII GGWCC 1 cut(s) 310
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 310
BmeRI GACNNNNNGTC 1 cut(s) 410
BmeT110I CYCGRG 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 310
BmsI GCATC 2 cut(s) 174, 226
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 117, 393
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 3 cut(s) 64, 117, 393
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 118
BslI CCNNNNNNNGG 3 cut(s) 64, 117, 393
BsoBI CYCGRG 1 cut(s) 168
Bsp143I GATC 1 cut(s) 228
BspQI GCTCTTC 1 cut(s) 378
BssMI GATC 1 cut(s) 228
Bst6I CTCTTC 2 cut(s) 299, 378
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 159
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNSI RCATGY 2 cut(s) 167, 226
BstPI GGTNACC 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 220
CviAII CATG 5 cut(s) 31, 164, 196, 223, 388
CviJI RGCY 5 cut(s) 121, 148, 155, 371, 409
CviKI_1 RGCY 5 cut(s) 121, 148, 155, 371, 409
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 1 cut(s) 159
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
DriI GACNNNNNGTC 1 cut(s) 410
Eam1104I CTCTTC 2 cut(s) 299, 378
Eam1105I GACNNNNNGTC 1 cut(s) 410
EarI CTCTTC 2 cut(s) 299, 378
Eco47I GGWCC 1 cut(s) 310
Eco47III AGCGCT 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 168
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
FaeI CATG 5 cut(s) 34, 167, 199, 226, 391
FatI CATG 5 cut(s) 30, 163, 195, 222, 387
FokI GGATG 1 cut(s) 164
GlaI GCGC 1 cut(s) 258
HaeII RGCGCY 1 cut(s) 260
HapII CCGG 1 cut(s) 118
HhaI GCGC 1 cut(s) 259
Hin1II CATG 5 cut(s) 34, 167, 199, 226, 391
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 3 cut(s) 18, 38, 287
HpaII CCGG 1 cut(s) 118
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 2 cut(s) 337, 404
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 131, 181
Hpy8I GTNNAC 2 cut(s) 337, 404
HpyAV CCTTC 1 cut(s) 301
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 5 cut(s) 34, 167, 199, 226, 391
HspAI GCGC 1 cut(s) 257
Kzo9I GATC 1 cut(s) 228
LguI GCTCTTC 1 cut(s) 378
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 5 cut(s) 30, 116, 131, 194, 312
LweI GCATC 2 cut(s) 174, 226
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 3 cut(s) 286, 317, 365
MluCI AATT 3 cut(s) 245, 345, 361
MlyI GAGTC 2 cut(s) 12, 32
MnlI CCTC 4 cut(s) 98, 302, 387, 389
MslI CAYNNNNRTG 1 cut(s) 182
MspI CCGG 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 265
NdeII GATC 1 cut(s) 228
NlaIII CATG 5 cut(s) 34, 167, 199, 226, 391
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 2 cut(s) 167, 226
PaeI GCATGC 1 cut(s) 167
PaeR7I CTCGAG 1 cut(s) 168
PciI ACATGT 1 cut(s) 222
PciSI GCTCTTC 1 cut(s) 378
PfeI GAWTC 1 cut(s) 287
PflFI GACNNNGTC 1 cut(s) 278
PleI GAGTC 2 cut(s) 12, 32
PpsI GAGTC 2 cut(s) 12, 32
PscI ACATGT 1 cut(s) 222
PspEI GGTNACC 1 cut(s) 67
PspPI GGNCC 1 cut(s) 310
PspXI VCTCGAGB 1 cut(s) 168
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 182
SapI GCTCTTC 1 cut(s) 378
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 1 cut(s) 310
SchI GAGTC 2 cut(s) 12, 32
SetI ASST 5 cut(s) 49, 90, 312, 373, 398
SfaNI GCATC 2 cut(s) 174, 226
SfcI CTRYAG 1 cut(s) 150
Sfr274I CTCGAG 1 cut(s) 168
SinI GGWCC 1 cut(s) 310
SlaI CTCGAG 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 167
Sse9I AATT 3 cut(s) 245, 345, 361
SspI AATATT 1 cut(s) 105
TaqI TCGA 4 cut(s) 5, 144, 169, 227
TaqII GACCGA 1 cut(s) 86
TasI AATT 3 cut(s) 245, 345, 361
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 1 cut(s) 287
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 24
Tth111I GACNNNGTC 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 310
XceI RCATGY 2 cut(s) 167, 226
XhoI CTCGAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.