Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000657.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

9197 .. 10392

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgcccaccccaccaaccccatggtcaacgttaatccaacggttaatgttaaccgtgcactattcagcacaccggtttaccagactccgcgaactcaaactacaccagccaccacctgtgatcgctaacattgagcccttgggccgcatcaacaccatcgacggtggtgctccaatcaccaatatgtttcacaaggcaaagaagcgttatgcacgtgccaaccatcccaaggaggtgtgcaatatccgctatgagaggtccgctaagctccccaaatttgggtgggagcccattaccttctcagaggaggaggagcgtggagtacatctgccccacgacgatccattcttgatcgacgccatactcgatagatggtcagtgggaaggatccttgtcgacaacggtccactaatggaggagatccacacggaattcatcattgtggactgtttcagctcatacaatgccatcatcgcacgccgctatgaaatcttaacattgggaaatcatgcagcggcgccagatatctttgaggaccccagagatgacgagaagaagtatgtcaaaaaggagcctgtcaactcggagacatccttaaggctcgacccagaggtagcggctgaactcacccagtttctacgtgacaacgtcgccgtctttgcatggtcctacgtgaacatgccaggcatctcccctaagatcatcactcaccaattaagtatcaaaccatctgcctaccctacccaacagcggcggagggcctttgatgaagaaagataccatgctatagaagaggaggttgccaagctccagagcattggattcatccgccaggtaaattacccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

282

Amino Acids

32.59

Weight (kDa)

6.61

Isoelectric Point (pI)

59.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	517
AccI	GTMKAC	1 cut(s)	396
AccII	CGCG	1 cut(s)	90
AclI	AACGTT	1 cut(s)	29
AclWI	GGATC	4 cut(s)	335, 382, 395, 415
AcsI	RAATTY	2 cut(s)	275, 431
AcvI	CACGTG	1 cut(s)	215
AcyI	GRCGYC	2 cut(s)	357, 518
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	4 cut(s)	229, 278, 279, 750
AflII	CTTAAG	1 cut(s)	595
AgeI	ACCGGT	1 cut(s)	72
AjnI	CCWGG	2 cut(s)	682, 831
AluBI	AGCT	3 cut(s)	268, 456, 808
AluI	AGCT	3 cut(s)	268, 456, 808
Alw21I	GWGCWC	2 cut(s)	60, 172
Alw26I	GTCTC	1 cut(s)	581
Alw44I	GTGCAC	1 cut(s)	56
AlwI	GGATC	4 cut(s)	335, 382, 395, 415
AoxI	GGCC	2 cut(s)	142, 759
ApaLI	GTGCAC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	2 cut(s)	275, 431
AsiGI	ACCGGT	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	520
AspS9I	GGNCC	6 cut(s)	142, 258, 404, 535, 666, 759
AsuHPI	GGTGA	3 cut(s)	169, 619, 701
AvaII	GGWCC	4 cut(s)	258, 404, 535, 666
BaeGI	GKGCMC	1 cut(s)	60
BamHI	GGATCC	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	517
BanII	GRGCYC	2 cut(s)	138, 291
BbrPI	CACGTG	1 cut(s)	215
Bbv12I	GWGCWC	2 cut(s)	60, 172
BbvI	GCAGC	1 cut(s)	524
BccI	CCATC	5 cut(s)	164, 231, 366, 476, 736
BceAI	ACGGC	1 cut(s)	638
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BciT130I	CCWGG	2 cut(s)	684, 833
BcoDI	GTCTC	1 cut(s)	581
BfmI	CTRYAG	1 cut(s)	786
BfoI	RGCGCY	1 cut(s)	521
BfrI	CTTAAG	1 cut(s)	595
BisI	GCNGC	6 cut(s)	145, 481, 513, 516, 618, 752
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	6 cut(s)	146, 482, 514, 517, 619, 753
Bme1390I	CCNGG	2 cut(s)	684, 833
Bme18I	GGWCC	4 cut(s)	258, 404, 535, 666
BmgT120I	GGNCC	6 cut(s)	142, 258, 404, 535, 666, 759
BmiI	GGNNCC	5 cut(s)	288, 389, 519, 537, 573
BmrFI	CCNGG	2 cut(s)	684, 833
BmrI	ACTGGG	1 cut(s)	625
BmsI	GCATC	2 cut(s)	156, 696
BmuI	ACTGGG	1 cut(s)	625
BoxI	GACNNNNGTC	1 cut(s)	402
BpmI	CTGGAG	1 cut(s)	794
Bpu1102I	GCTNAGC	1 cut(s)	264
BsaAI	YACGTR	3 cut(s)	215, 641, 673
BsaHI	GRCGYC	2 cut(s)	357, 518
BsaJI	CCNNGG	3 cut(s)	20, 138, 228
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 278, 279, 750
Bse118I	RCCGGY	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	631
BseBI	CCWGG	2 cut(s)	684, 833
BseDI	CCNNGG	3 cut(s)	20, 138, 228
BseGI	GGATG	3 cut(s)	223, 590, 825
BseLI	CCNNNNNNNGG	4 cut(s)	229, 278, 279, 750
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	631
BseRI	GAGGAG	5 cut(s)	320, 323, 326, 431, 809
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	524
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	144, 761
BshNI	GGYRCC	1 cut(s)	517
BshTI	ACCGGT	1 cut(s)	72
BsiHKAI	GWGCWC	2 cut(s)	60, 172
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	4 cut(s)	229, 278, 279, 750
BsmAI	GTCTC	1 cut(s)	581
BsnI	GGCC	2 cut(s)	144, 761
Bsp1286I	GDGCHC	4 cut(s)	60, 138, 172, 291
Bsp143I	GATC	6 cut(s)	120, 340, 351, 387, 420, 699
Bsp1720I	GCTNAGC	1 cut(s)	264
Bsp19I	CCATGG	1 cut(s)	20
BspANI	GGCC	2 cut(s)	144, 761
BspCNI	CTCAG	1 cut(s)	314
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	5 cut(s)	288, 389, 519, 537, 573
BspPI	GGATC	4 cut(s)	335, 382, 395, 415
BspT107I	GGYRCC	1 cut(s)	517
BspTI	CTTAAG	1 cut(s)	595
BsrFI	RCCGGY	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	631
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	3 cut(s)	20, 138, 228
BssMI	GATC	6 cut(s)	120, 340, 351, 387, 420, 699
BssNI	GRCGYC	2 cut(s)	357, 518
BssT1I	CCWWGG	3 cut(s)	20, 138, 228
Bst2UI	CCWGG	2 cut(s)	684, 833
Bst4CI	ACNGT	5 cut(s)	42, 55, 164, 404, 449
Bst6I	CTCTTC	1 cut(s)	786
BstACI	GRCGYC	2 cut(s)	357, 518
BstAFI	CTTAAG	1 cut(s)	595
BstBAI	YACGTR	3 cut(s)	215, 641, 673
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	3 cut(s)	264, 301, 696
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	3 cut(s)	223, 590, 825
BstFNI	CGCG	1 cut(s)	90
BstH2I	RGCGCY	1 cut(s)	521
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	6 cut(s)	123, 343, 354, 390, 423, 702
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	6 cut(s)	120, 340, 351, 387, 420, 699
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 473, 659
BstNI	CCWGG	2 cut(s)	684, 833
BstNSI	RCATGY	1 cut(s)	682
BstPAI	GACNNNNGTC	1 cut(s)	402
BstSCI	CCNGG	2 cut(s)	682, 831
BstSFI	CTRYAG	1 cut(s)	786
BstSLI	GKGCMC	1 cut(s)	60
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	524
BstX2I	RGATCY	2 cut(s)	387, 420
BstXI	CCANNNNNNTGG	2 cut(s)	21, 818
BstYI	RGATCY	2 cut(s)	387, 420
BsuRI	GGCC	2 cut(s)	144, 761
BtgI	CCRYGG	1 cut(s)	20
BtgZI	GCGATG	1 cut(s)	457
BtsCI	GGATG	3 cut(s)	223, 590, 825
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	478
CfoI	GCGC	1 cut(s)	520
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	6 cut(s)	142, 258, 404, 535, 666, 759
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	323
CspAI	ACCGGT	1 cut(s)	72
CviAII	CATG	5 cut(s)	21, 509, 663, 679, 782
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	3 cut(s)	264, 301, 696
DinI	GGCGCC	1 cut(s)	519
DpnI	GATC	6 cut(s)	122, 342, 353, 389, 422, 701
DpnII	GATC	6 cut(s)	120, 340, 351, 387, 420, 699
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
EciI	GGCGGA	2 cut(s)	769, 818
Eco130I	CCWWGG	3 cut(s)	20, 138, 228
Eco24I	GRGCYC	2 cut(s)	138, 291
Eco32I	GATATC	1 cut(s)	526
Eco47I	GGWCC	4 cut(s)	258, 404, 535, 666
Eco72I	CACGTG	1 cut(s)	215
EcoO109I	RGGNCCY	2 cut(s)	535, 759
EcoRI	GAATTC	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	682, 831
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	3 cut(s)	20, 138, 228
EcoT38I	GRGCYC	2 cut(s)	138, 291
EgeI	GGCGCC	1 cut(s)	519
EheI	GGCGCC	1 cut(s)	519
ErhI	CCWWGG	3 cut(s)	20, 138, 228
FaeI	CATG	5 cut(s)	24, 512, 666, 682, 785
FatI	CATG	5 cut(s)	20, 508, 662, 678, 781
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	6 cut(s)	145, 481, 513, 516, 618, 752
FokI	GGATG	3 cut(s)	210, 577, 812
FriOI	GRGCYC	2 cut(s)	138, 291
Fsp4HI	GCNGC	6 cut(s)	145, 481, 513, 516, 618, 752
GlaI	GCGC	1 cut(s)	519
GluI	GCNGC	6 cut(s)	145, 481, 513, 516, 618, 752
GsuI	CTGGAG	1 cut(s)	794
HaeII	RGCGCY	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	144, 761
HapII	CCGG	1 cut(s)	73
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	1 cut(s)	520
Hin1I	GRCGYC	2 cut(s)	357, 518
Hin1II	CATG	5 cut(s)	24, 512, 666, 682, 785
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HincII	GTYRAC	4 cut(s)	27, 51, 397, 580
HindII	GTYRAC	4 cut(s)	27, 51, 397, 580
HinfI	GANTC	2 cut(s)	84, 822
HpaI	GTTAAC	1 cut(s)	51
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	3 cut(s)	169, 619, 701
Hpy166II	GTNNAC	9 cut(s)	27, 51, 58, 78, 397, 407, 445, 580, 676
Hpy188I	TCNGA	2 cut(s)	304, 586
Hpy188III	TCNNGA	2 cut(s)	349, 811
Hpy8I	GTNNAC	9 cut(s)	27, 51, 58, 78, 397, 407, 445, 580, 676
Hpy99I	CGWCG	4 cut(s)	164, 341, 359, 653
HpyAV	CCTTC	2 cut(s)	307, 378
HpyCH4III	ACNGT	5 cut(s)	42, 55, 164, 404, 449
HpyCH4IV	ACGT	5 cut(s)	29, 214, 640, 648, 672
HpyCH4V	TGCA	5 cut(s)	58, 212, 240, 512, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 473, 659
HpyF3I	CTNAG	3 cut(s)	264, 301, 696
HpySE526I	ACGT	5 cut(s)	29, 214, 640, 648, 672
Hsp92I	GRCGYC	2 cut(s)	357, 518
Hsp92II	CATG	5 cut(s)	24, 512, 666, 682, 785
HspAI	GCGC	1 cut(s)	518
KasI	GGCGCC	1 cut(s)	517
KspAI	GTTAAC	1 cut(s)	51
Kzo9I	GATC	6 cut(s)	120, 340, 351, 387, 420, 699
LmnI	GCTCC	6 cut(s)	175, 273, 286, 313, 571, 813
Lsp1109I	GCAGC	1 cut(s)	524
LweI	GCATC	2 cut(s)	156, 696
MaeII	ACGT	5 cut(s)	29, 214, 640, 648, 672
MaeIII	GTNAC	1 cut(s)	641
MalI	GATC	6 cut(s)	122, 342, 353, 389, 422, 701
MboI	GATC	6 cut(s)	120, 340, 351, 387, 420, 699
MboII	GAAGA	3 cut(s)	565, 782, 803
MflI	RGATCY	2 cut(s)	387, 420
MhlI	GDGCHC	4 cut(s)	60, 138, 172, 291
MluCI	AATT	4 cut(s)	275, 431, 713, 838
Mly113I	GGCGCC	1 cut(s)	518
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	1 cut(s)	61
MseI	TTAA	6 cut(s)	32, 44, 50, 494, 596, 716
MslI	CAYNNNNRTG	2 cut(s)	182, 440
MspA1I	CMGCKG	2 cut(s)	515, 751
MspCI	CTTAAG	1 cut(s)	595
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	684, 833
MvaI	CCWGG	2 cut(s)	684, 833
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	246, 473, 659
NarI	GGCGCC	1 cut(s)	518
NcoI	CCATGG	1 cut(s)	20
NdeII	GATC	6 cut(s)	120, 340, 351, 387, 420, 699
NlaIII	CATG	5 cut(s)	24, 512, 666, 682, 785
NlaIV	GGNNCC	5 cut(s)	288, 389, 519, 537, 573
NmuCI	GTSAC	1 cut(s)	641
NspI	RCATGY	1 cut(s)	682
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	822
PflFI	GACNNNGTC	1 cut(s)	647
PinAI	ACCGGT	1 cut(s)	72
PkrI	GCNGC	6 cut(s)	146, 482, 514, 517, 619, 753
PleI	GAGTC	1 cut(s)	78
PluTI	GGCGCC	1 cut(s)	521
PmaCI	CACGTG	1 cut(s)	215
PmlI	CACGTG	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	78
Ppu21I	YACGTR	3 cut(s)	215, 641, 673
PpuMI	RGGWCCY	1 cut(s)	535
PshAI	GACNNNNGTC	1 cut(s)	402
Psp1406I	AACGTT	1 cut(s)	29
Psp5II	RGGWCCY	1 cut(s)	535
Psp6I	CCWGG	2 cut(s)	682, 831
PspCI	CACGTG	1 cut(s)	215
PspGI	CCWGG	2 cut(s)	682, 831
PspN4I	GGNNCC	5 cut(s)	288, 389, 519, 537, 573
PspPI	GGNCC	6 cut(s)	142, 258, 404, 535, 666, 759
PspPPI	RGGWCCY	1 cut(s)	535
PsrI	GAACNNNNNNTAC	2 cut(s)	84, 116
PsuI	RGATCY	2 cut(s)	387, 420
PsyI	GACNNNGTC	1 cut(s)	647
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
RseI	CAYNNNNRTG	2 cut(s)	182, 440
SalI	GTCGAC	1 cut(s)	395
SaqAI	TTAA	6 cut(s)	32, 44, 50, 494, 596, 716
SatI	GCNGC	6 cut(s)	145, 481, 513, 516, 618, 752
Sau3AI	GATC	6 cut(s)	120, 340, 351, 387, 420, 699
Sau96I	GGNCC	6 cut(s)	142, 258, 404, 535, 666, 759
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	2 cut(s)	684, 833
SduI	GDGCHC	4 cut(s)	60, 138, 172, 291
SfaNI	GCATC	2 cut(s)	156, 696
SfcI	CTRYAG	1 cut(s)	786
SfoI	GGCGCC	1 cut(s)	519
SinI	GGWCC	4 cut(s)	258, 404, 535, 666
SmiMI	CAYNNNNRTG	2 cut(s)	182, 440
SmlI	CTYRAG	1 cut(s)	595
SmoI	CTYRAG	1 cut(s)	595
Sse9I	AATT	4 cut(s)	275, 431, 713, 838
SspDI	GGCGCC	1 cut(s)	517
StyD4I	CCNGG	2 cut(s)	682, 831
StyI	CCWWGG	3 cut(s)	20, 138, 228
TaaI	ACNGT	5 cut(s)	42, 55, 164, 404, 449
TaiI	ACGT	5 cut(s)	32, 217, 643, 651, 675
TaqI	TCGA	5 cut(s)	159, 354, 366, 396, 603
TasI	AATT	4 cut(s)	275, 431, 713, 838
TatI	WGTACW	1 cut(s)	322
TauI	GCSGC	5 cut(s)	147, 483, 518, 620, 754
TfiI	GAWTC	1 cut(s)	822
Tru1I	TTAA	6 cut(s)	32, 44, 50, 494, 596, 716
Tru9I	TTAA	6 cut(s)	32, 44, 50, 494, 596, 716
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	641
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	1 cut(s)	641
TspDTI	ATGAA	4 cut(s)	424, 501, 783, 814
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	1 cut(s)	384
Tth111I	GACNNNGTC	1 cut(s)	647
Vha464I	CTTAAG	1 cut(s)	595
VneI	GTGCAC	1 cut(s)	56
VpaK11BI	GGWCC	4 cut(s)	258, 404, 535, 666
XapI	RAATTY	2 cut(s)	275, 431
XceI	RCATGY	1 cut(s)	682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.