Rmu_sc0000659.1_g000020

DNA repair and recombination protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000659.1
N/A
Physical Location & Seq
Forward (+)
80196 .. 82514
2319 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 609 bp
atggttaaaaaggccattatagtcactcccaccagtcttgtgagcaattgggaggctgagataaagaagtgggtcggagacagagtttgcctcattgctctgtgtgaaagtaccagagatgatgttgtttctggaattgatcagttcacaagtgctcgcagccgtaggttggttggtgtcggcgatcttgctgacgagacagaacaggggagtcagtgcagcagccttcatggcctcttggagaagtcggccgccggaaaccgcagcggcagcgatggtgctaaaagggctgtcctaggcttggtagtgggcttagggtcaggattagagggtctcatgagcaacttccgggatcaatggcgtcgtggatttgaggttctgaatcgaggacgatgtaggatcgtagagcgttggatcggggcagtgctgttttgtggtggcgcgggttgtggcgtcatggtacgtggtgatttgggtcatggcggcgtgaattgtggcagccagggtcctggcggcatgggtcgggaggagctaatcggggactgctacgtatggcagtgtatgttggagatggagaatgggcctgggtttgggctaagccatgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000280 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033170 GO:0033554 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045003 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0051701 GO:0051704 GO:0051716 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070887 GO:0071214 GO:0071241 GO:0071248 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0104004 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

202

Amino Acids

21.45

Weight (kDa)

6.31

Isoelectric Point (pI)

27.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 443
AciI CCGC 6 cut(s) 252, 262, 267, 443, 483, 513
AclWI GGATC 3 cut(s) 360, 407, 422
AcoI YGGCCR 1 cut(s) 249
AcyI GRCGYC 2 cut(s) 361, 453
AfaI GTAC 2 cut(s) 112, 462
AfiI CCNNNNNNNGG 3 cut(s) 169, 301, 590
AjnI CCWGG 3 cut(s) 501, 508, 583
AloI GAACNNNNNNTCC 2 cut(s) 360, 392
AluBI AGCT 1 cut(s) 532
AluI AGCT 1 cut(s) 532
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 3 cut(s) 72, 191, 338
AlwI GGATC 3 cut(s) 360, 407, 422
AoxI GGCC 4 cut(s) 12, 232, 249, 581
ApeKI GCWGC 6 cut(s) 159, 219, 222, 264, 270, 498
AspA2I CCTAGG 1 cut(s) 295
AspLEI GCGC 1 cut(s) 443
AspS9I GGNCC 2 cut(s) 506, 581
AsuC2I CCSGG 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 479
AvaII GGWCC 1 cut(s) 506
AvrII CCTAGG 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 6 cut(s) 171, 231, 234, 276, 282, 510
BccI CCATC 2 cut(s) 269, 565
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 3 cut(s) 503, 510, 585
BclI TGATCA 1 cut(s) 139
BcnI CCSGG 1 cut(s) 350
BcoDI GTCTC 3 cut(s) 72, 191, 338
BfaI CTAG 1 cut(s) 296
BglI GCCNNNNNGGC 1 cut(s) 231
BlnI CCTAGG 1 cut(s) 295
BlpI GCTNAGC 1 cut(s) 596
Bme1390I CCNGG 4 cut(s) 350, 503, 510, 585
Bme18I GGWCC 1 cut(s) 506
BmgT120I GGNCC 2 cut(s) 506, 581
BmiI GGNNCC 1 cut(s) 507
BmrFI CCNGG 4 cut(s) 350, 503, 510, 585
BplI GAGNNNNNCTC 2 cut(s) 75, 107
Bpu10I CCTNAGC 1 cut(s) 313
Bpu1102I GCTNAGC 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 350
BsaAI YACGTR 2 cut(s) 464, 550
BsaHI GRCGYC 2 cut(s) 361, 453
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 3 cut(s) 295, 502, 584
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 301, 590
Bse1I ACTGG 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 93
BseBI CCWGG 3 cut(s) 503, 510, 585
BseDI CCNNGG 3 cut(s) 295, 502, 584
BseLI CCNNNNNNNGG 3 cut(s) 169, 301, 590
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 542
BseX3I CGGCCG 1 cut(s) 249
BseXI GCAGC 6 cut(s) 171, 231, 234, 276, 282, 510
BsgI GTGCAG 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 443
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 4 cut(s) 14, 234, 251, 583
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 157
BsiSI CCGG 2 cut(s) 255, 349
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 3 cut(s) 169, 301, 590
BsmAI GTCTC 3 cut(s) 72, 191, 338
BsmFI GGGAC 1 cut(s) 554
BsnI GGCC 4 cut(s) 14, 234, 251, 583
Bso31I GGTCTC 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 5 cut(s) 139, 184, 352, 399, 414
Bsp1720I GCTNAGC 1 cut(s) 596
BspACI CCGC 6 cut(s) 252, 262, 267, 443, 483, 513
BspANI GGCC 4 cut(s) 14, 234, 251, 583
BspCNI CTCAG 1 cut(s) 49
BspFNI CGCG 1 cut(s) 443
BspHI TCATGA 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 507
BspPI GGATC 3 cut(s) 360, 407, 422
BspTNI GGTCTC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 3 cut(s) 295, 502, 584
BssMI GATC 5 cut(s) 139, 184, 352, 399, 414
BssNI GRCGYC 2 cut(s) 361, 453
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 3 cut(s) 503, 510, 585
BstACI GRCGYC 2 cut(s) 361, 453
BstBAI YACGTR 2 cut(s) 464, 550
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 3 cut(s) 57, 313, 596
BstFNI CGCG 1 cut(s) 443
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 5 cut(s) 142, 187, 355, 402, 417
BstMAI GTCTC 3 cut(s) 72, 191, 338
BstMBI GATC 5 cut(s) 139, 184, 352, 399, 414
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 3 cut(s) 231, 270, 287
BstNI CCWGG 3 cut(s) 503, 510, 585
BstSCI CCNGG 4 cut(s) 348, 501, 508, 583
BstSNI TACGTA 1 cut(s) 550
BstUI CGCG 1 cut(s) 443
BstV1I GCAGC 6 cut(s) 171, 231, 234, 276, 282, 510
BstXI CCANNNNNNTGG 1 cut(s) 509
BstZI CGGCCG 1 cut(s) 249
BsuRI GGCC 4 cut(s) 14, 234, 251, 583
BtgZI GCGATG 1 cut(s) 288
BtsI GCAGTG 2 cut(s) 429, 563
BtsIMutI CAGTG 3 cut(s) 221, 429, 563
Cac8I GCNNGC 1 cut(s) 157
CciI TCATGA 1 cut(s) 336
CfoI GCGC 1 cut(s) 443
Cfr13I GGNCC 2 cut(s) 506, 581
CseI GACGC 2 cut(s) 350, 442
Csp6I GTAC 2 cut(s) 111, 461
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 6 cut(s) 230, 337, 457, 479, 517, 602
CviQI GTAC 2 cut(s) 111, 461
DdeI CTNAG 3 cut(s) 57, 313, 596
DpnI GATC 5 cut(s) 141, 186, 354, 401, 416
DpnII GATC 5 cut(s) 139, 184, 352, 399, 414
EaeI YGGCCR 1 cut(s) 249
EagI CGGCCG 1 cut(s) 249
EclXI CGGCCG 1 cut(s) 249
Eco105I TACGTA 1 cut(s) 550
Eco130I CCWWGG 1 cut(s) 295
Eco31I GGTCTC 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 506
Eco52I CGGCCG 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 506
EcoRII CCWGG 3 cut(s) 501, 508, 583
EcoT14I CCWWGG 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 6 cut(s) 233, 340, 460, 482, 520, 605
FaiI YATR 9 cut(s) 20, 231, 338, 458, 480, 518, 553, 563, 603
FalI AAGNNNNNCTT 1 cut(s) 589
FaqI GGGAC 1 cut(s) 554
FatI CATG 6 cut(s) 229, 336, 456, 478, 516, 601
FauI CCCGC 1 cut(s) 436
FbaI TGATCA 1 cut(s) 139
FspBI CTAG 1 cut(s) 296
GlaI GCGC 1 cut(s) 442
HaeIII GGCC 4 cut(s) 14, 234, 251, 583
HapII CCGG 2 cut(s) 255, 349
HgaI GACGC 2 cut(s) 350, 442
HhaI GCGC 1 cut(s) 443
Hin1I GRCGYC 2 cut(s) 361, 453
Hin1II CATG 6 cut(s) 233, 340, 460, 482, 520, 605
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HinfI GANTC 2 cut(s) 211, 382
HpaII CCGG 2 cut(s) 255, 349
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 2 cut(s) 77, 381
Hpy188III TCNNGA 4 cut(s) 132, 321, 337, 524
Hpy8I GTNNAC 1 cut(s) 147
Hpy99I CGWCG 1 cut(s) 366
HpyAV CCTTC 1 cut(s) 236
HpyCH4IV ACGT 2 cut(s) 463, 549
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 231, 270, 287
HpyF3I CTNAG 3 cut(s) 57, 313, 596
HpySE526I ACGT 2 cut(s) 463, 549
Hsp92I GRCGYC 2 cut(s) 361, 453
Hsp92II CATG 6 cut(s) 233, 340, 460, 482, 520, 605
HspAI GCGC 1 cut(s) 441
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 5 cut(s) 139, 184, 352, 399, 414
LmnI GCTCC 1 cut(s) 529
Lsp1109I GCAGC 6 cut(s) 171, 231, 234, 276, 282, 510
MaeI CTAG 1 cut(s) 296
MaeII ACGT 2 cut(s) 463, 549
MaeIII GTNAC 1 cut(s) 22
MalI GATC 5 cut(s) 141, 186, 354, 401, 416
MboI GATC 5 cut(s) 139, 184, 352, 399, 414
MfeI CAATTG 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 3 cut(s) 46, 135, 490
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 3 cut(s) 55, 392, 546
MnlI CCTC 7 cut(s) 46, 101, 245, 322, 367, 380, 520
MseI TTAA 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 2 cut(s) 255, 349
MspR9I CCNGG 4 cut(s) 350, 503, 510, 585
MunI CAATTG 1 cut(s) 46
MvaI CCWGG 3 cut(s) 503, 510, 585
MvnI CGCG 1 cut(s) 443
MwoI GCNNNNNNNGC 3 cut(s) 231, 270, 287
NciI CCSGG 1 cut(s) 350
NdeII GATC 5 cut(s) 139, 184, 352, 399, 414
NlaIII CATG 6 cut(s) 233, 340, 460, 482, 520, 605
NlaIV GGNNCC 1 cut(s) 507
NmuCI GTSAC 1 cut(s) 22
PagI TCATGA 1 cut(s) 336
PfeI GAWTC 1 cut(s) 382
PfoI TCCNGGA 1 cut(s) 348
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
Ppu21I YACGTR 2 cut(s) 464, 550
PpuMI RGGWCCY 1 cut(s) 506
Psp5II RGGWCCY 1 cut(s) 506
Psp6I CCWGG 3 cut(s) 501, 508, 583
PspGI CCWGG 3 cut(s) 501, 508, 583
PspN4I GGNNCC 1 cut(s) 507
PspPI GGNCC 2 cut(s) 506, 581
PspPPI RGGWCCY 1 cut(s) 506
RsaI GTAC 2 cut(s) 112, 462
RsaNI GTAC 2 cut(s) 111, 461
SaqAI TTAA 1 cut(s) 6
Sau3AI GATC 5 cut(s) 139, 184, 352, 399, 414
Sau96I GGNCC 2 cut(s) 506, 581
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 4 cut(s) 350, 503, 510, 585
SduI GDGCHC 1 cut(s) 157
SetI ASST 5 cut(s) 170, 378, 466, 534, 552
SinI GGWCC 1 cut(s) 506
SnaBI TACGTA 1 cut(s) 550
Sse9I AATT 3 cut(s) 46, 135, 490
SsiI CCGC 6 cut(s) 252, 262, 267, 443, 483, 513
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 4 cut(s) 348, 501, 508, 583
StyI CCWWGG 1 cut(s) 295
TaiI ACGT 2 cut(s) 466, 552
TaqI TCGA 1 cut(s) 385
TasI AATT 3 cut(s) 46, 135, 490
TauI GCSGC 4 cut(s) 254, 270, 486, 516
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 3 cut(s) 221, 429, 563
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 6 cut(s) 159, 219, 222, 264, 270, 498
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 218
TspRI CASTG 3 cut(s) 221, 429, 563
VpaK11BI GGWCC 1 cut(s) 506
XmaJI CCTAGG 1 cut(s) 295
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.