Rmu_sc0000660.1_g000019

Belongs to the syntaxin family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000660.1
N/A
Physical Location & Seq
Forward (+)
47795 .. 53939
6145 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1083 bp
atgagcgtcatcgacatcctctcccgagtcgactcaatatgcaggaaatacgacaagtatgatatcgagaagcagcgcgaactcaatgccttcggcgacgatgccttcgctcgcctctacgcccatgtcgaagatgaaatccaagcccttctcctgaaagcggagaagtctgcgatggaaagtaatagggctgttgccgtggccactaatgtcgagattcgtcggactaaggcccgattgatggaagaacttcctaagctgcgtaaattggctcagaagaaggatgaaggtctagatatcatatcagaaggattgggtacgttgaaaaatttggccgaagatatgaatgagaagaagaatgagggattgatcattgttcactatgttcaggaaatggaccgacaggtcccgttaattgatgagatagatacaaaggtggataaggtcacatctgacataaaatctaataatgtgaggctcaaggaaaatctttacaaggtagctccccaatgccgctggatcgcccaagcccaggccgccgtgggccgaaacccccacgaactgcggtcggtttttgccgctgtccaccttgactacgtcaccatcaactacatctccgattccggttccgtcctcctctctcatcaccacgacttcgccgacctcttctccctctgcagcgacgccgtttaccgctccatgattcagcttctcgcctcactttcaggccgcaatctgaaccgtgctcgacccaggctctccgacatgaacggcgatgaagaatctgtcccgatggccggaatccggctaaagttgattcctactgcaggtgaccagagtctgacggccggtgaccgggctccggcgaagaggcttaaatttggcctcatgcgccatccaggtctcgtagctcgggctgatcgcggtcgtcggttctccagagtcattccggaggaacttctcctgcggggtgatggagcagccgacgtagctgaggagattgtgagctttgaatatgggcatcaggctggatatggagacgtagagaacgtacgtcgtattaggatagccggaggtcggtga

Protein Analysis

360

Amino Acids

40.36

Weight (kDa)

7.14

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 818
AasI GACNNNNNNGTC 1 cut(s) 404
Acc36I ACCTGC 1 cut(s) 818
AccBSI CCGCTC 1 cut(s) 696
AccI GTMKAC 1 cut(s) 30
AccII CGCG 2 cut(s) 78, 924
AccIII TCCGGA 1 cut(s) 949
AciI CCGC 9 cut(s) 161, 514, 537, 565, 579, 694, 730, 924, 967
AclWI GGATC 1 cut(s) 527
AcoI YGGCCR 4 cut(s) 201, 333, 795, 846
AcsI RAATTY 2 cut(s) 328, 878
AcyI GRCGYC 1 cut(s) 684
AfaI GTAC 2 cut(s) 319, 1053
AfiI CCNNNNNNNGG 9 cut(s) 160, 241, 532, 797, 804, 827, 855, 862, 1077
AgsI TTSAA 2 cut(s) 325, 1013
AjnI CCWGG 3 cut(s) 531, 752, 898
AluBI AGCT 6 cut(s) 259, 503, 709, 911, 992, 1008
AluI AGCT 6 cut(s) 259, 503, 709, 911, 992, 1008
Alw21I GWGCWC 1 cut(s) 748
Alw26I GTCTC 2 cut(s) 908, 1032
AlwI GGATC 1 cut(s) 527
AlwNI CAGNNNCTG 1 cut(s) 841
Ama87I CYCGRG 2 cut(s) 24, 912
Aor13HI TCCGGA 1 cut(s) 949
AoxI GGCC 9 cut(s) 201, 231, 333, 534, 544, 727, 795, 846, 883
ApeKI GCWGC 4 cut(s) 73, 259, 678, 980
ApoI RAATTY 2 cut(s) 328, 878
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
Asp700I GAANNNNTTC 1 cut(s) 249
AspLEI GCGC 2 cut(s) 78, 894
AspS9I GGNCC 4 cut(s) 232, 397, 406, 544
AsuC2I CCSGG 1 cut(s) 857
AsuHPI GGTGA 5 cut(s) 592, 638, 842, 863, 983
AvaI CYCGRG 2 cut(s) 24, 912
AvaII GGWCC 2 cut(s) 397, 406
BaeI ACNNNNGTAYC 2 cut(s) 420, 453
BalI TGGCCA 1 cut(s) 203
BanII GRGCYC 1 cut(s) 862
Bbv12I GWGCWC 1 cut(s) 748
BbvCI CCTCAGC 1 cut(s) 993
BbvI GCAGC 4 cut(s) 85, 246, 690, 992
BccI CCATC 6 cut(s) 169, 235, 611, 787, 903, 968
BceAI ACGGC 5 cut(s) 182, 524, 671, 787, 861
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BciT130I CCWGG 3 cut(s) 533, 754, 900
BclI TGATCA 1 cut(s) 369
BcnI CCSGG 1 cut(s) 857
BcoDI GTCTC 2 cut(s) 908, 1032
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 2 cut(s) 676, 825
BfuAI ACCTGC 1 cut(s) 818
BisI GCNGC 8 cut(s) 74, 260, 514, 537, 579, 679, 730, 981
BlsI GCNGC 8 cut(s) 75, 261, 515, 538, 580, 680, 731, 982
Bme1390I CCNGG 4 cut(s) 533, 754, 857, 900
Bme18I GGWCC 2 cut(s) 397, 406
BmeT110I CYCGRG 2 cut(s) 24, 912
BmgT120I GGNCC 4 cut(s) 232, 397, 406, 544
BmiI GGNNCC 3 cut(s) 408, 628, 861
BmrFI CCNGG 4 cut(s) 533, 754, 857, 900
BmsI GCATC 2 cut(s) 91, 1030
BoxI GACNNNNGTC 1 cut(s) 837
BpmI CTGGAG 1 cut(s) 922
Bpu10I CCTNAGC 2 cut(s) 255, 993
BpuEI CTTGAG 1 cut(s) 464
BpuMI CCSGG 1 cut(s) 857
BsaHI GRCGYC 1 cut(s) 684
BsaI GGTCTC 1 cut(s) 908
BsaJI CCNNGG 4 cut(s) 198, 531, 540, 752
BsaWI WCCGGW 2 cut(s) 623, 949
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 599, 629, 653, 683
Bsc4I CCNNNNNNNGG 9 cut(s) 160, 241, 532, 797, 804, 827, 855, 862, 1077
Bse118I RCCGGY 1 cut(s) 848
BseAI TCCGGA 1 cut(s) 949
BseBI CCWGG 3 cut(s) 533, 754, 900
BseDI CCNNGG 4 cut(s) 198, 531, 540, 752
BseGI GGATG 3 cut(s) 15, 289, 895
BseLI CCNNNNNNNGG 9 cut(s) 160, 241, 532, 797, 804, 827, 855, 862, 1077
BseMII CTCAG 2 cut(s) 287, 984
BseRI GAGGAG 2 cut(s) 626, 1010
BseX3I CGGCCG 1 cut(s) 846
BseXI GCAGC 4 cut(s) 85, 246, 690, 992
Bsh1236I CGCG 2 cut(s) 78, 924
Bsh1285I CGRYCG 3 cut(s) 569, 849, 928
BshFI GGCC 9 cut(s) 203, 233, 335, 536, 546, 729, 797, 848, 885
BsiEI CGRYCG 3 cut(s) 569, 849, 928
BsiHKAI GWGCWC 1 cut(s) 748
BsiHKCI CYCGRG 2 cut(s) 24, 912
BsiSI CCGG 8 cut(s) 624, 798, 805, 849, 856, 863, 950, 1071
BsiWI CGTACG 1 cut(s) 1051
BslFI GGGAC 2 cut(s) 392, 773
BslI CCNNNNNNNGG 9 cut(s) 160, 241, 532, 797, 804, 827, 855, 862, 1077
BsmAI GTCTC 2 cut(s) 908, 1032
BsmBI CGTCTC 1 cut(s) 1032
BsmFI GGGAC 2 cut(s) 392, 773
BsnI GGCC 9 cut(s) 203, 233, 335, 536, 546, 729, 797, 848, 885
Bso31I GGTCTC 1 cut(s) 908
BsoBI CYCGRG 2 cut(s) 24, 912
Bsp1286I GDGCHC 2 cut(s) 748, 862
Bsp13I TCCGGA 1 cut(s) 949
Bsp143I GATC 3 cut(s) 369, 519, 919
BspACI CCGC 9 cut(s) 161, 514, 537, 565, 579, 694, 730, 924, 967
BspANI GGCC 9 cut(s) 203, 233, 335, 536, 546, 729, 797, 848, 885
BspCNI CTCAG 2 cut(s) 286, 985
BspEI TCCGGA 1 cut(s) 949
BspFNI CGCG 2 cut(s) 78, 924
BspLI GGNNCC 3 cut(s) 408, 628, 861
BspMAI CTGCAG 2 cut(s) 680, 829
BspMI ACCTGC 1 cut(s) 818
BspPI GGATC 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 908
BsrBI CCGCTC 1 cut(s) 696
BsrFI RCCGGY 1 cut(s) 848
BssAI RCCGGY 1 cut(s) 848
BssECI CCNNGG 4 cut(s) 198, 531, 540, 752
BssMI GATC 3 cut(s) 369, 519, 919
BssNI GRCGYC 1 cut(s) 684
Bst2UI CCWGG 3 cut(s) 533, 754, 900
Bst4CI ACNGT 1 cut(s) 743
Bst6I CTCTTC 2 cut(s) 671, 863
BstACI GRCGYC 1 cut(s) 684
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 4 cut(s) 228, 255, 273, 993
BstDSI CCRYGG 2 cut(s) 198, 540
BstEII GGTNACC 2 cut(s) 830, 851
BstENI CCTNNNNNAGG 1 cut(s) 825
BstF5I GGATG 3 cut(s) 15, 289, 895
BstFNI CGCG 2 cut(s) 78, 924
BstHHI GCGC 2 cut(s) 78, 894
BstKTI GATC 3 cut(s) 372, 522, 922
BstMAI GTCTC 2 cut(s) 908, 1032
BstMBI GATC 3 cut(s) 369, 519, 919
BstMCI CGRYCG 3 cut(s) 569, 849, 928
BstMWI GCNNNNNNNGC 3 cut(s) 536, 891, 989
BstNI CCWGG 3 cut(s) 533, 754, 900
BstPAI GACNNNNGTC 1 cut(s) 837
BstPI GGTNACC 2 cut(s) 830, 851
BstSCI CCNGG 4 cut(s) 531, 752, 855, 898
BstSFI CTRYAG 2 cut(s) 676, 825
BstUI CGCG 2 cut(s) 78, 924
BstV1I GCAGC 4 cut(s) 85, 246, 690, 992
BstZI CGGCCG 1 cut(s) 846
BsuRI GGCC 9 cut(s) 203, 233, 335, 536, 546, 729, 797, 848, 885
BtgI CCRYGG 2 cut(s) 198, 540
BtgZI GCGATG 2 cut(s) 188, 789
BtsCI GGATG 3 cut(s) 15, 289, 895
BveI ACCTGC 1 cut(s) 818
Cac8I GCNNGC 1 cut(s) 112
CaiI CAGNNNCTG 1 cut(s) 841
CfoI GCGC 2 cut(s) 78, 894
Cfr10I RCCGGY 1 cut(s) 848
Cfr13I GGNCC 4 cut(s) 232, 397, 406, 544
CseI GACGC 1 cut(s) 692
Csp6I GTAC 2 cut(s) 318, 1052
CviAII CATG 4 cut(s) 125, 700, 766, 889
CviQI GTAC 2 cut(s) 318, 1052
DdeI CTNAG 4 cut(s) 228, 255, 273, 993
DpnI GATC 3 cut(s) 371, 521, 921
DpnII GATC 3 cut(s) 369, 519, 919
DrdI GACNNNNNNGTC 1 cut(s) 404
DseDI GACNNNNNNGTC 1 cut(s) 404
EaeI YGGCCR 4 cut(s) 201, 333, 795, 846
EagI CGGCCG 1 cut(s) 846
Eam1104I CTCTTC 2 cut(s) 671, 863
EarI CTCTTC 2 cut(s) 671, 863
EclXI CGGCCG 1 cut(s) 846
Eco24I GRGCYC 1 cut(s) 862
Eco31I GGTCTC 1 cut(s) 908
Eco32I GATATC 2 cut(s) 64, 298
Eco47I GGWCC 2 cut(s) 397, 406
Eco52I CGGCCG 1 cut(s) 846
Eco88I CYCGRG 2 cut(s) 24, 912
Eco91I GGTNACC 2 cut(s) 830, 851
EcoNI CCTNNNNNAGG 1 cut(s) 825
EcoO109I RGGNCCY 1 cut(s) 406
EcoO65I GGTNACC 2 cut(s) 830, 851
EcoRII CCWGG 3 cut(s) 531, 752, 898
EcoRV GATATC 2 cut(s) 64, 298
EcoT38I GRGCYC 1 cut(s) 862
Esp3I CGTCTC 1 cut(s) 1032
FaeI CATG 4 cut(s) 128, 703, 769, 892
FaqI GGGAC 2 cut(s) 392, 773
FatI CATG 4 cut(s) 124, 699, 765, 888
FauI CCCGC 1 cut(s) 960
FbaI TGATCA 1 cut(s) 369
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 8 cut(s) 74, 260, 514, 537, 579, 679, 730, 981
FokI GGATG 3 cut(s) 2, 296, 882
FriOI GRGCYC 1 cut(s) 862
Fsp4HI GCNGC 8 cut(s) 74, 260, 514, 537, 579, 679, 730, 981
FspBI CTAG 1 cut(s) 293
GlaI GCGC 2 cut(s) 77, 893
GluI GCNGC 8 cut(s) 74, 260, 514, 537, 579, 679, 730, 981
GsuI CTGGAG 1 cut(s) 922
HaeIII GGCC 9 cut(s) 203, 233, 335, 536, 546, 729, 797, 848, 885
HapII CCGG 8 cut(s) 624, 798, 805, 849, 856, 863, 950, 1071
HgaI GACGC 1 cut(s) 692
HhaI GCGC 2 cut(s) 78, 894
Hin1I GRCGYC 1 cut(s) 684
Hin1II CATG 4 cut(s) 128, 703, 769, 892
Hin6I GCGC 2 cut(s) 76, 892
HinP1I GCGC 2 cut(s) 76, 892
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HpaII CCGG 8 cut(s) 624, 798, 805, 849, 856, 863, 950, 1071
HphI GGTGA 5 cut(s) 592, 638, 842, 863, 983
Hpy166II GTNNAC 4 cut(s) 31, 379, 586, 691
Hpy188I TCNGA 8 cut(s) 225, 276, 307, 454, 619, 738, 763, 843
Hpy188III TCNNGA 9 cut(s) 24, 67, 154, 214, 293, 389, 790, 939, 950
Hpy8I GTNNAC 4 cut(s) 31, 379, 586, 691
Hpy99I CGWCG 6 cut(s) 101, 225, 686, 933, 989, 1059
HpyAV CCTTC 6 cut(s) 100, 115, 158, 274, 281, 302
HpyCH4III ACNGT 1 cut(s) 743
HpyCH4IV ACGT 6 cut(s) 320, 597, 987, 1041, 1050, 1054
HpyCH4V TGCA 3 cut(s) 42, 678, 827
HpyF10VI GCNNNNNNNGC 3 cut(s) 536, 891, 989
HpyF3I CTNAG 4 cut(s) 228, 255, 273, 993
HpySE526I ACGT 6 cut(s) 320, 597, 987, 1041, 1050, 1054
Hsp92I GRCGYC 1 cut(s) 684
Hsp92II CATG 4 cut(s) 128, 703, 769, 892
HspAI GCGC 2 cut(s) 76, 892
Kpn2I TCCGGA 1 cut(s) 949
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 3 cut(s) 369, 519, 919
LmnI GCTCC 4 cut(s) 508, 701, 865, 977
Lsp1109I GCAGC 4 cut(s) 85, 246, 690, 992
LweI GCATC 2 cut(s) 91, 1030
MaeI CTAG 1 cut(s) 293
MaeII ACGT 6 cut(s) 320, 597, 987, 1041, 1050, 1054
MaeIII GTNAC 4 cut(s) 445, 598, 830, 851
MalI GATC 3 cut(s) 371, 521, 921
MbiI CCGCTC 1 cut(s) 696
MboI GATC 3 cut(s) 369, 519, 919
MboII GAAGA 9 cut(s) 143, 257, 289, 350, 364, 367, 658, 791, 880
MhlI GDGCHC 2 cut(s) 748, 862
MlsI TGGCCA 1 cut(s) 203
MluCI AATT 4 cut(s) 266, 328, 414, 878
MluNI TGGCCA 1 cut(s) 203
MlyI GAGTC 4 cut(s) 26, 36, 847, 951
MmeI TCCRAC 2 cut(s) 203, 786
Mox20I TGGCCA 1 cut(s) 203
MroI TCCGGA 1 cut(s) 949
MroXI GAANNNNTTC 1 cut(s) 249
MscI TGGCCA 1 cut(s) 203
MseI TTAA 2 cut(s) 413, 876
Msp20I TGGCCA 1 cut(s) 203
MspA1I CMGCKG 2 cut(s) 516, 581
MspI CCGG 8 cut(s) 624, 798, 805, 849, 856, 863, 950, 1071
MspR9I CCNGG 4 cut(s) 533, 754, 857, 900
MvaI CCWGG 3 cut(s) 533, 754, 900
MvnI CGCG 2 cut(s) 78, 924
MwoI GCNNNNNNNGC 3 cut(s) 536, 891, 989
NciI CCSGG 1 cut(s) 857
NdeII GATC 3 cut(s) 369, 519, 919
NlaIII CATG 4 cut(s) 128, 703, 769, 892
NlaIV GGNNCC 3 cut(s) 408, 628, 861
NmuCI GTSAC 4 cut(s) 445, 598, 830, 851
PaqCI CACCTGC 1 cut(s) 818
PcsI WCGNNNNNNNCGW 3 cut(s) 126, 657, 1047
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 6 cut(s) 217, 620, 703, 782, 801, 817
Pfl23II CGTACG 1 cut(s) 1051
PflFI GACNNNGTC 1 cut(s) 596
PkrI GCNGC 8 cut(s) 75, 261, 515, 538, 580, 680, 731, 982
PleI GAGTC 4 cut(s) 26, 35, 846, 950
PpsI GAGTC 4 cut(s) 26, 35, 846, 950
PpuMI RGGWCCY 1 cut(s) 406
PshAI GACNNNNGTC 1 cut(s) 837
Psp5II RGGWCCY 1 cut(s) 406
Psp6I CCWGG 3 cut(s) 531, 752, 898
PspEI GGTNACC 2 cut(s) 830, 851
PspGI CCWGG 3 cut(s) 531, 752, 898
PspLI CGTACG 1 cut(s) 1051
PspN4I GGNNCC 3 cut(s) 408, 628, 861
PspPI GGNCC 4 cut(s) 232, 397, 406, 544
PspPPI RGGWCCY 1 cut(s) 406
PstI CTGCAG 2 cut(s) 680, 829
PstNI CAGNNNCTG 1 cut(s) 841
PsyI GACNNNGTC 1 cut(s) 596
RsaI GTAC 2 cut(s) 319, 1053
RsaNI GTAC 2 cut(s) 318, 1052
SalI GTCGAC 1 cut(s) 29
SaqAI TTAA 2 cut(s) 413, 876
SatI GCNGC 8 cut(s) 74, 260, 514, 537, 579, 679, 730, 981
Sau3AI GATC 3 cut(s) 369, 519, 919
Sau96I GGNCC 4 cut(s) 232, 397, 406, 544
SchI GAGTC 4 cut(s) 26, 36, 847, 951
ScrFI CCNGG 4 cut(s) 533, 754, 857, 900
SduI GDGCHC 2 cut(s) 748, 862
SfaNI GCATC 2 cut(s) 91, 1030
SfcI CTRYAG 2 cut(s) 676, 825
SinI GGWCC 2 cut(s) 397, 406
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 4 cut(s) 266, 328, 414, 878
SsiI CCGC 9 cut(s) 161, 514, 537, 565, 579, 694, 730, 924, 967
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 4 cut(s) 531, 752, 855, 898
TaaI ACNGT 1 cut(s) 743
TaiI ACGT 6 cut(s) 323, 600, 990, 1044, 1053, 1057
TaqI TCGA 6 cut(s) 12, 30, 66, 129, 213, 748
TaqII GACCGA 1 cut(s) 414
TasI AATT 4 cut(s) 266, 328, 414, 878
TauI GCSGC 4 cut(s) 516, 539, 581, 732
TfiI GAWTC 6 cut(s) 217, 620, 703, 782, 801, 817
Tru1I TTAA 2 cut(s) 413, 876
Tru9I TTAA 2 cut(s) 413, 876
TseFI GTSAC 4 cut(s) 445, 598, 830, 851
TseI GCWGC 4 cut(s) 73, 259, 678, 980
Tsp45I GTSAC 4 cut(s) 445, 598, 830, 851
TspDTI ATGAA 5 cut(s) 150, 300, 359, 782, 792
TspGWI ACGGA 1 cut(s) 619
Tth111I GACNNNGTC 1 cut(s) 596
VpaK11BI GGWCC 2 cut(s) 397, 406
XagI CCTNNNNNAGG 1 cut(s) 825
XapI RAATTY 2 cut(s) 328, 878
XbaI TCTAGA 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.