Rmu_sc0000674.1_g000020

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000674.1
N/A
Physical Location & Seq
Reverse (-)
111189 .. 112731
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
atgtctacccaatgcttagcaagcagcggtagcactgccgctcaaacttcaaatctggatgttaaaagactgacagcaaattacaagccaagtatttggagttgcgattttcttcagtcgttacagattgatgatcataatcatgaagaagtatacggagataataggtggaagttgatggaggaggatctaaaaaatatgattgatgcagagtcactagagactacacttgaattgattgatgacatccaacaattagggtcctcagacatcatgggtttcaagtctcccaagatgttttcaaatttttcatggattgtgacggcagctttaaggattgcctttgcaaagatgtcaaaggcatgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

122

Amino Acids

13.72

Weight (kDa)

4.74

Isoelectric Point (pI)

60.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 41
AccI GTMKAC 2 cut(s) 5, 153
AciI CCGC 2 cut(s) 27, 39
AclWI GGATC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 304
AcuI CTGAAG 1 cut(s) 98
AgsI TTSAA 4 cut(s) 51, 233, 283, 303
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
Alw26I GTCTC 2 cut(s) 215, 291
AlwI GGATC 1 cut(s) 195
ApeKI GCWGC 2 cut(s) 24, 326
ApoI RAATTY 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 261
AvaII GGWCC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 36, 338
BccI CCATC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 339
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 2 cut(s) 215, 291
BfaI CTAG 1 cut(s) 218
BisI GCNGC 3 cut(s) 25, 39, 327
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 3 cut(s) 26, 40, 328
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 262
BmsI GCATC 1 cut(s) 196
Bpu1102I GCTNAGC 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 138
BseGI GGATG 2 cut(s) 64, 246
BseJI GATNNNNATC 1 cut(s) 138
BseMII CTCAG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 36, 338
BsmAI GTCTC 2 cut(s) 215, 291
Bsp143I GATC 2 cut(s) 133, 187
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 2 cut(s) 27, 39
BspCNI CTCAG 1 cut(s) 278
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 262
BspPI GGATC 1 cut(s) 195
BsrBI CCGCTC 1 cut(s) 41
BssMI GATC 2 cut(s) 133, 187
BssNAI GTATAC 1 cut(s) 154
Bst1107I GTATAC 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 22, 364
BstDEI CTNAG 2 cut(s) 16, 265
BstF5I GGATG 2 cut(s) 64, 246
BstKTI GATC 2 cut(s) 136, 190
BstMAI GTCTC 2 cut(s) 215, 291
BstMBI GATC 2 cut(s) 133, 187
BstMWI GCNNNNNNNGC 2 cut(s) 21, 30
BstNSI RCATGY 1 cut(s) 366
BstV1I GCAGC 2 cut(s) 36, 338
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 1 cut(s) 187
BstZ17I GTATAC 1 cut(s) 154
BtsCI GGATG 2 cut(s) 64, 246
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 22, 364
CciI TCATGA 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 261
CviAII CATG 4 cut(s) 143, 274, 312, 363
CviJI RGCY 2 cut(s) 88, 329
CviKI_1 RGCY 2 cut(s) 88, 329
DdeI CTNAG 2 cut(s) 16, 265
DpnI GATC 2 cut(s) 135, 189
DpnII GATC 2 cut(s) 133, 187
Eco47I GGWCC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 98
EcoO109I RGGNCCY 1 cut(s) 261
FaeI CATG 4 cut(s) 146, 277, 315, 366
FaiI YATR 7 cut(s) 138, 144, 154, 200, 275, 313, 364
FatI CATG 4 cut(s) 142, 273, 311, 362
FbaI TGATCA 1 cut(s) 133
FblI GTMKAC 2 cut(s) 5, 153
Fnu4HI GCNGC 3 cut(s) 25, 39, 327
FokI GGATG 2 cut(s) 71, 233
Fsp4HI GCNGC 3 cut(s) 25, 39, 327
FspBI CTAG 1 cut(s) 218
GluI GCNGC 3 cut(s) 25, 39, 327
Hin1II CATG 4 cut(s) 146, 277, 315, 366
HinfI GANTC 1 cut(s) 212
Hpy166II GTNNAC 2 cut(s) 6, 154
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 2 cut(s) 56, 143
Hpy8I GTNNAC 2 cut(s) 6, 154
HpyCH4V TGCA 2 cut(s) 209, 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 30
HpyF3I CTNAG 2 cut(s) 16, 265
Hsp92II CATG 4 cut(s) 146, 277, 315, 366
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 2 cut(s) 133, 187
LpnPI CCDG 1 cut(s) 41
Lsp1109I GCAGC 2 cut(s) 36, 338
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 3 cut(s) 120, 213, 319
MalI GATC 2 cut(s) 135, 189
MbiI CCGCTC 1 cut(s) 41
MboI GATC 2 cut(s) 133, 187
MboII GAAGA 2 cut(s) 104, 158
MflI RGATCY 1 cut(s) 187
MluCI AATT 4 cut(s) 79, 233, 254, 304
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 3 cut(s) 175, 178, 274
MseI TTAA 2 cut(s) 63, 332
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 21, 30
NdeII GATC 2 cut(s) 133, 187
NlaIII CATG 4 cut(s) 146, 277, 315, 366
NlaIV GGNNCC 1 cut(s) 262
NmuCI GTSAC 2 cut(s) 213, 319
NspI RCATGY 1 cut(s) 366
PaeI GCATGC 1 cut(s) 366
PagI TCATGA 1 cut(s) 142
PkrI GCNGC 3 cut(s) 26, 40, 328
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 262
PspPI GGNCC 1 cut(s) 261
PspPPI RGGWCCY 1 cut(s) 261
PsuI RGATCY 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 2 cut(s) 63, 332
SatI GCNGC 3 cut(s) 25, 39, 327
Sau3AI GATC 2 cut(s) 133, 187
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 1 cut(s) 221
SetI ASST 2 cut(s) 170, 331
SfaNI GCATC 1 cut(s) 196
SinI GGWCC 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 141
SphI GCATGC 1 cut(s) 366
Sse9I AATT 4 cut(s) 79, 233, 254, 304
SsiI CCGC 2 cut(s) 27, 39
SspMI CTAG 1 cut(s) 218
TasI AATT 4 cut(s) 79, 233, 254, 304
TauI GCSGC 1 cut(s) 41
Tru1I TTAA 2 cut(s) 63, 332
Tru9I TTAA 2 cut(s) 63, 332
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 2 cut(s) 213, 319
TseI GCWGC 2 cut(s) 24, 326
Tsp45I GTSAC 2 cut(s) 213, 319
TspDTI ATGAA 2 cut(s) 159, 300
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 261
XapI RAATTY 1 cut(s) 304
XceI RCATGY 1 cut(s) 366
XmiI GTMKAC 2 cut(s) 5, 153
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.