Rmu_sc0000679.1_g000004

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000679.1
N/A
Physical Location & Seq
Reverse (-)
22533 .. 22886
354 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
atgactcgtcatatggatgattcactccaatacgagtatttgaatgaagaagatcccagaagactgtgcatctcactcgaagaacgctttagcaatgcatgtgactccctacttcctaagctcaaagtgagataccataatcttcacttctgtaatttcaagacaattcttgattacaactcggaagcgcttcacatcaaattcttgatggaattctgtagaaaagatatcacatatgtcatggtgatcgagaggactctttccaccttccccgtctctgcatcgatggttgctaagagttatcgtatagatataaatgcaggatgtatcacaaggtttcatgagcataactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

13.94

Weight (kDa)

6.58

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 2 cut(s) 200, 212
AfeI AGCGCT 1 cut(s) 189
AgsI TTSAA 2 cut(s) 43, 160
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 1 cut(s) 47
Aor51HI AGCGCT 1 cut(s) 189
ApoI RAATTY 2 cut(s) 200, 212
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 67
BccI CCATC 2 cut(s) 202, 280
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BcoDI GTCTC 1 cut(s) 280
BfmI CTRYAG 1 cut(s) 217
BfoI RGCGCY 1 cut(s) 191
BmsI GCATC 2 cut(s) 78, 290
BpiI GAAGAC 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 117
Bsa29I ATCGAT 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 100
BseCI ATCGAT 1 cut(s) 284
BseGI GGATG 2 cut(s) 22, 329
BseMI GCAATG 1 cut(s) 100
BshVI ATCGAT 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
Bsp143I GATC 2 cut(s) 52, 246
BspDI ATCGAT 1 cut(s) 284
BspHI TCATGA 1 cut(s) 340
BspPI GGATC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 100
BssMI GATC 2 cut(s) 52, 246
Bst4CI ACNGT 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 117, 294
BstF5I GGATG 2 cut(s) 22, 329
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 2 cut(s) 55, 249
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 2 cut(s) 52, 246
BstNSI RCATGY 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
Bsu15I ATCGAT 1 cut(s) 284
BsuTUI ATCGAT 1 cut(s) 284
BtsCI GGATG 2 cut(s) 22, 329
CciI TCATGA 1 cut(s) 340
CfoI GCGC 1 cut(s) 190
ClaI ATCGAT 1 cut(s) 284
CviAII CATG 3 cut(s) 99, 241, 341
CviJI RGCY 1 cut(s) 121
CviKI_1 RGCY 1 cut(s) 121
DdeI CTNAG 2 cut(s) 117, 294
DpnI GATC 2 cut(s) 54, 248
DpnII GATC 2 cut(s) 52, 246
Eco32I GATATC 1 cut(s) 229
Eco47III AGCGCT 1 cut(s) 189
EcoRI GAATTC 1 cut(s) 212
EcoRV GATATC 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 3 cut(s) 102, 244, 344
FatI CATG 3 cut(s) 98, 240, 340
FauNDI CATATG 2 cut(s) 12, 235
FokI GGATG 2 cut(s) 29, 336
GlaI GCGC 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 191
HhaI GCGC 1 cut(s) 190
Hin1II CATG 3 cut(s) 102, 244, 344
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 4 cut(s) 4, 20, 104, 256
HphI GGTGA 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 5 cut(s) 160, 170, 205, 250, 341
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4V TGCA 4 cut(s) 69, 98, 281, 320
HpyF3I CTNAG 2 cut(s) 117, 294
Hsp92II CATG 3 cut(s) 102, 244, 344
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 2 cut(s) 52, 246
LpnPI CCDG 2 cut(s) 70, 306
LweI GCATC 2 cut(s) 78, 290
MaeIII GTNAC 1 cut(s) 101
MalI GATC 2 cut(s) 54, 248
MboI GATC 2 cut(s) 52, 246
MboII GAAGA 5 cut(s) 59, 62, 72, 92, 134
MflI RGATCY 1 cut(s) 52
MluCI AATT 4 cut(s) 154, 165, 200, 212
MlyI GAGTC 2 cut(s) 98, 250
MnlI CCTC 1 cut(s) 246
Mph1103I ATGCAT 1 cut(s) 100
MroXI GAANNNNTTC 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 15
NdeI CATATG 2 cut(s) 12, 235
NdeII GATC 2 cut(s) 52, 246
NlaIII CATG 3 cut(s) 102, 244, 344
NmuCI GTSAC 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 100
NspI RCATGY 1 cut(s) 102
PagI TCATGA 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 20
PleI GAGTC 2 cut(s) 98, 250
PpsI GAGTC 2 cut(s) 98, 250
PsuI RGATCY 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 15
Sau3AI GATC 2 cut(s) 52, 246
SchI GAGTC 2 cut(s) 98, 250
SetI ASST 3 cut(s) 123, 269, 338
SfaNI GCATC 2 cut(s) 78, 290
SfcI CTRYAG 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 4 cut(s) 154, 165, 200, 212
TaaI ACNGT 1 cut(s) 66
TaqI TCGA 3 cut(s) 78, 249, 284
TasI AATT 4 cut(s) 154, 165, 200, 212
TfiI GAWTC 1 cut(s) 20
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 2 cut(s) 60, 329
XapI RAATTY 2 cut(s) 200, 212
XceI RCATGY 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 189
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.