Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000680.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7414 .. 7713

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atggctccgattccgccagacaacggcgtagaaggagacgatgagcgagatgaggaggaagaagaagaagaggaggaggaggaggaagtggaagaggaagaggaggaagaggaggaggagccgaggctcaagtaccagagaatgggaggcagcattcctacgcttctagcgaacgacgtcgcttcgtgtatcgccgtggcggagcggatgatcgcgctcgggacgcacggcgggacaattcatattctcgattttctcggcaatcaggtcagcttggattcaatttggttttttatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

99

Amino Acids

11.2

Weight (kDa)

4.05

Isoelectric Point (pI)

87.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Vps41	PF23411	43 - 90	1.3e-10	Vps42 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	180
AccB7I	CCANNNNNTGG	1 cut(s)	142
AccBSI	CCGCTC	1 cut(s)	205
AccII	CGCG	1 cut(s)	215
AciI	CCGC	4 cut(s)	14, 200, 205, 231
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	23, 142
AgsI	TTSAA	1 cut(s)	282
AluBI	AGCT	1 cut(s)	273
AluI	AGCT	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	30
Ama87I	CYCGRG	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	162
BceAI	ACGGC	3 cut(s)	40, 179, 244
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	1 cut(s)	167
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
BmeT110I	CYCGRG	1 cut(s)	218
BmiI	GGNNCC	2 cut(s)	6, 120
BpuEI	CTTGAG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	122, 195
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 142
BseDI	CCNNGG	2 cut(s)	122, 195
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	23, 142
BseRI	GAGGAG	9 cut(s)	68, 86, 89, 92, 95, 116, 125, 128, 131
BseXI	GCAGC	1 cut(s)	162
Bsh1236I	CGCG	1 cut(s)	215
BsiHKCI	CYCGRG	1 cut(s)	218
BslFI	GGGAC	2 cut(s)	235, 247
BslI	CCNNNNNNNGG	2 cut(s)	23, 142
BsmAI	GTCTC	1 cut(s)	30
BsmBI	CGTCTC	1 cut(s)	30
BsmFI	GGGAC	2 cut(s)	235, 247
BsmI	GAATGC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	210
BspACI	CCGC	4 cut(s)	14, 200, 205, 231
BspFNI	CGCG	1 cut(s)	215
BspLI	GGNNCC	2 cut(s)	6, 120
BsrBI	CCGCTC	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	122, 195
BssMI	GATC	1 cut(s)	210
BssNI	GRCGYC	1 cut(s)	177
Bst6I	CTCTTC	4 cut(s)	63, 87, 93, 102
BstACI	GRCGYC	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	213
BstFNI	CGCG	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	213
CfoI	GCGC	1 cut(s)	217
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	133
CviJI	RGCY	4 cut(s)	5, 121, 127, 273
CviKI_1	RGCY	4 cut(s)	5, 121, 127, 273
CviQI	GTAC	1 cut(s)	133
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eam1104I	CTCTTC	4 cut(s)	63, 87, 93, 102
EarI	CTCTTC	4 cut(s)	63, 87, 93, 102
EciI	GGCGGA	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	218
Esp3I	CGTCTC	1 cut(s)	30
FaiI	YATR	2 cut(s)	243, 296
FaqI	GGGAC	2 cut(s)	235, 247
FauI	CCCGC	1 cut(s)	224
Fnu4HI	GCNGC	1 cut(s)	151
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	151
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	151
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	2 cut(s)	10, 278
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	2 cut(s)	220, 248
Hpy99I	CGWCG	2 cut(s)	179, 182
HpyAV	CCTTC	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	177
HspAI	GCGC	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	3 cut(s)	10, 118, 202
LpnPI	CCDG	3 cut(s)	30, 149, 251
Lsp1109I	GCAGC	1 cut(s)	162
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	1 cut(s)	177
MalI	GATC	1 cut(s)	212
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	1 cut(s)	210
MboII	GAAGA	7 cut(s)	71, 74, 77, 80, 104, 110, 119
MluCI	AATT	2 cut(s)	237, 282
Mva1269I	GAATGC	1 cut(s)	153
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	223
NdeII	GATC	1 cut(s)	210
NlaIV	GGNNCC	2 cut(s)	6, 120
NmeAIII	GCCGAG	2 cut(s)	147, 237
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PctI	GAATGC	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	10, 278
PflMI	CCANNNNNTGG	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	6, 120
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	1 cut(s)	210
SetI	ASST	3 cut(s)	180, 270, 275
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	237, 282
SsiI	CCGC	4 cut(s)	14, 200, 205, 231
SspMI	CTAG	1 cut(s)	167
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	249
TasI	AATT	2 cut(s)	237, 282
TfiI	GAWTC	2 cut(s)	10, 278
TseI	GCWGC	1 cut(s)	150
TspDTI	ATGAA	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	142
XspI	CTAG	1 cut(s)	167
ZraI	GACGTC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.