Rmu_sc0000687.1_g000025

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000687.1
N/A
Physical Location & Seq
Forward (+)
84537 .. 85536
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 339 bp
atgcgacggcgatcccatgccgtggcaaataatttttctctttgcgacgccgcatttgccgtaaacaatgcaggggttggtggaaccattaaagtcgaccgtgaagctttcatagctgctgcagttggtatggttaagcaagtaaccgaagcactgcttcccctcctcgatctgtccgagtcaccaagagttgtcaacactagctccaccaagggggcatacactagaattgtggccaagaaatacccaaatttctgcgttaattgcatttgccctggatttgtcatcactgatatgaccttcaatgctgccatcttaacgattgatgaagctggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

112

Amino Acids

11.91

Weight (kDa)

8.43

Isoelectric Point (pI)

30.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 22
AccI GTMKAC 1 cut(s) 96
AciI CCGC 1 cut(s) 51
AclWI GGATC 1 cut(s) 6
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 1 cut(s) 250
AcyI GRCGYC 1 cut(s) 48
AfiI CCNNNNNNNGG 2 cut(s) 22, 213
AgsI TTSAA 1 cut(s) 304
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 4 cut(s) 107, 116, 204, 332
AluI AGCT 4 cut(s) 107, 116, 204, 332
AlwI GGATC 1 cut(s) 6
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 3 cut(s) 116, 119, 308
ApoI RAATTY 1 cut(s) 250
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AsuHPI GGTGA 1 cut(s) 174
BalI TGGCCA 1 cut(s) 236
BbvI GCAGC 3 cut(s) 103, 106, 295
BccI CCATC 1 cut(s) 320
BceAI ACGGC 3 cut(s) 5, 23, 44
BciT130I CCWGG 1 cut(s) 276
BfaI CTAG 2 cut(s) 201, 225
BfmI CTRYAG 1 cut(s) 120
BisI GCNGC 4 cut(s) 51, 117, 120, 309
BlsI GCNGC 4 cut(s) 52, 118, 121, 310
Bme1390I CCNGG 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 3 cut(s) 21, 210, 274
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 213
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 3 cut(s) 21, 210, 274
BseLI CCNNNNNNNGG 2 cut(s) 22, 213
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 3 cut(s) 103, 106, 295
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 100
BslI CCNNNNNNNGG 2 cut(s) 22, 213
BsnI GGCC 1 cut(s) 236
Bsp143I GATC 2 cut(s) 11, 169
BspACI CCGC 1 cut(s) 51
BspANI GGCC 1 cut(s) 236
BspLI GGNNCC 1 cut(s) 85
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 1 cut(s) 6
BssECI CCNNGG 3 cut(s) 21, 210, 274
BssMI GATC 2 cut(s) 11, 169
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 101
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 334
BstDSI CCRYGG 1 cut(s) 21
BstKTI GATC 2 cut(s) 14, 172
BstMBI GATC 2 cut(s) 11, 169
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 3 cut(s) 56, 113, 264
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 3 cut(s) 103, 106, 295
BsuRI GGCC 1 cut(s) 236
BtgI CCRYGG 1 cut(s) 21
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 2 cut(s) 152, 288
Cac8I GCNNGC 1 cut(s) 334
CseI GACGC 1 cut(s) 56
CviAII CATG 1 cut(s) 17
CviJI RGCY 6 cut(s) 107, 116, 204, 236, 332, 336
CviKI_1 RGCY 6 cut(s) 107, 116, 204, 236, 332, 336
DpnI GATC 2 cut(s) 13, 171
DpnII GATC 2 cut(s) 11, 169
EaeI YGGCCR 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 20
FaiI YATR 5 cut(s) 18, 113, 131, 220, 296
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FatI CATG 1 cut(s) 16
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 4 cut(s) 51, 117, 120, 309
Fsp4HI GCNGC 4 cut(s) 51, 117, 120, 309
FspBI CTAG 2 cut(s) 201, 225
GluI GCNGC 4 cut(s) 51, 117, 120, 309
HaeIII GGCC 1 cut(s) 236
HgaI GACGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 1 cut(s) 20
HincII GTYRAC 2 cut(s) 97, 196
HindII GTYRAC 2 cut(s) 97, 196
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 1 cut(s) 179
HphI GGTGA 1 cut(s) 174
Hpy166II GTNNAC 3 cut(s) 64, 97, 196
Hpy188I TCNGA 1 cut(s) 178
Hpy8I GTNNAC 3 cut(s) 64, 97, 196
Hpy99I CGWCG 2 cut(s) 9, 50
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 3 cut(s) 71, 122, 267
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 113, 264
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 1 cut(s) 20
Kzo9I GATC 2 cut(s) 11, 169
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 4 cut(s) 57, 261, 288, 318
Lsp1109I GCAGC 3 cut(s) 103, 106, 295
MaeI CTAG 2 cut(s) 201, 225
MaeIII GTNAC 2 cut(s) 142, 180
MalI GATC 2 cut(s) 13, 171
MboI GATC 2 cut(s) 11, 169
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 4 cut(s) 31, 228, 250, 262
MluNI TGGCCA 1 cut(s) 236
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 2 cut(s) 173, 176
Mox20I TGGCCA 1 cut(s) 236
MscI TGGCCA 1 cut(s) 236
MseI TTAA 4 cut(s) 90, 135, 261, 317
MslI CAYNNNNRTG 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 3 cut(s) 56, 113, 264
NdeII GATC 2 cut(s) 11, 169
NlaIII CATG 1 cut(s) 20
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PflMI CCANNNNNTGG 1 cut(s) 22
PkrI GCNGC 4 cut(s) 52, 118, 121, 310
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 85
PstI CTGCAG 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 293
SalI GTCGAC 1 cut(s) 95
SaqAI TTAA 4 cut(s) 90, 135, 261, 317
SatI GCNGC 4 cut(s) 51, 117, 120, 309
Sau3AI GATC 2 cut(s) 11, 169
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 276
SetI ASST 5 cut(s) 109, 118, 206, 302, 334
SfcI CTRYAG 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 4 cut(s) 31, 228, 250, 262
SsiI CCGC 1 cut(s) 51
SspMI CTAG 2 cut(s) 201, 225
StyD4I CCNGG 1 cut(s) 274
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 101
TaqI TCGA 2 cut(s) 96, 168
TasI AATT 4 cut(s) 31, 228, 250, 262
TauI GCSGC 1 cut(s) 53
Tru1I TTAA 4 cut(s) 90, 135, 261, 317
Tru9I TTAA 4 cut(s) 90, 135, 261, 317
TscAI CASTG 2 cut(s) 159, 295
TseFI GTSAC 1 cut(s) 180
TseI GCWGC 3 cut(s) 116, 119, 308
Tsp45I GTSAC 1 cut(s) 180
TspDTI ATGAA 1 cut(s) 100
TspRI CASTG 2 cut(s) 159, 295
Van91I CCANNNNNTGG 1 cut(s) 22
XapI RAATTY 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 2 cut(s) 201, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.