Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000706.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

8730 .. 10760

Gene Structure 2031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ctgtggccggaaaagaccccaactaccgcttcaacttcaccaccgacgaaaacccagcgctccaaaaaagcccaagttgaaaatggcctgatagaactagaacccgaatcttcaaatccggagctcgaagattacgacgacggcatcgatttcttgtacgaccacccgcccttggtctgctgcttcggggtagcccagaaagagttcgtcttgacggtttgggtctctgacaacccgatggacccagacataacctcagaagagaagaagaggaggactggacaagctgaggaggagaagaagacggagatggagacagagatagtgagatacctgggggcggacttcagagaccggagatgggttgctggttgcagccttgcaggttgccgtgttctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB SOUL

Protein Analysis

133

Amino Acids

15.09

Weight (kDa)

4.67

Isoelectric Point (pI)

55.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	374
AccIII	TCCGGA	1 cut(s)	118
AciI	CCGC	3 cut(s)	27, 167, 341
AcoI	YGGCCR	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	331
AfaI	GTAC	1 cut(s)	158
AfeI	AGCGCT	1 cut(s)	59
AfiI	CCNNNNNNNGG	3 cut(s)	172, 340, 361
AgsI	TTSAA	3 cut(s)	33, 80, 114
AjnI	CCWGG	1 cut(s)	333
AjuI	GAANNNNNNNTTGG	2 cut(s)	13, 45
AluBI	AGCT	2 cut(s)	124, 287
AluI	AGCT	2 cut(s)	124, 287
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	3 cut(s)	229, 308, 345
Aor13HI	TCCGGA	1 cut(s)	118
Aor51HI	AGCGCT	1 cut(s)	59
AoxI	GGCC	2 cut(s)	5, 85
ApeKI	GCWGC	2 cut(s)	180, 375
Asp700I	GAANNNNTTC	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	126
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	167, 387
BccI	CCATC	3 cut(s)	232, 304, 354
BceAI	ACGGC	2 cut(s)	157, 375
BciT130I	CCWGG	1 cut(s)	335
BcoDI	GTCTC	3 cut(s)	229, 308, 345
BfaI	CTAG	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	374
BisI	GCNGC	2 cut(s)	181, 376
BlsI	GCNGC	2 cut(s)	182, 377
Bme1390I	CCNGG	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	335
BmsI	GCATC	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	288
Bsa29I	ATCGAT	1 cut(s)	147
BsaI	GGTCTC	2 cut(s)	229, 345
BsaJI	CCNNGG	2 cut(s)	171, 334
BsaWI	WCCGGW	2 cut(s)	118, 354
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 340, 361
Bse1I	ACTGG	1 cut(s)	283
BseAI	TCCGGA	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	335
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	171, 334
BseLI	CCNNNNNNNGG	3 cut(s)	172, 340, 361
BseMII	CTCAG	2 cut(s)	270, 279
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	3 cut(s)	286, 305, 308
BseXI	GCAGC	2 cut(s)	167, 387
BseYI	CCCAGC	1 cut(s)	54
BshFI	GGCC	2 cut(s)	7, 87
BshVI	ATCGAT	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	3 cut(s)	8, 119, 355
BslI	CCNNNNNNNGG	3 cut(s)	172, 340, 361
BsmAI	GTCTC	3 cut(s)	229, 308, 345
BsnI	GGCC	2 cut(s)	7, 87
Bso31I	GGTCTC	2 cut(s)	229, 345
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp13I	TCCGGA	1 cut(s)	118
BspACI	CCGC	3 cut(s)	27, 167, 341
BspANI	GGCC	2 cut(s)	7, 87
BspCNI	CTCAG	2 cut(s)	269, 280
BspDI	ATCGAT	1 cut(s)	147
BspEI	TCCGGA	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	243
BspMI	ACCTGC	1 cut(s)	374
BspTNI	GGTCTC	2 cut(s)	229, 345
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	171, 334
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	2 cut(s)	255, 263
BstDEI	CTNAG	2 cut(s)	256, 288
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstMAI	GTCTC	3 cut(s)	229, 308, 345
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	167, 387
BstV2I	GAAGAC	1 cut(s)	308
Bsu15I	ATCGAT	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	7, 87
BsuTUI	ATCGAT	1 cut(s)	147
BveI	ACCTGC	1 cut(s)	374
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	241
ClaI	ATCGAT	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	157
CviJI	RGCY	7 cut(s)	7, 71, 87, 124, 194, 287, 378
CviKI_1	RGCY	7 cut(s)	7, 71, 87, 124, 194, 287, 378
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	256, 288
EaeI	YGGCCR	1 cut(s)	5
Eam1104I	CTCTTC	2 cut(s)	255, 263
EarI	CTCTTC	2 cut(s)	255, 263
EciI	GGCGGA	1 cut(s)	356
Ecl136II	GAGCTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	126
Eco31I	GGTCTC	2 cut(s)	229, 345
Eco47I	GGWCC	1 cut(s)	241
Eco47III	AGCGCT	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	331
EcoICRI	GAGCTC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	171
FaiI	YATR	1 cut(s)	251
FauI	CCCGC	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	181, 376
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	2 cut(s)	181, 376
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	2 cut(s)	181, 376
GsaI	CCCAGC	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	7, 87
HapII	CCGG	3 cut(s)	8, 119, 355
HhaI	GCGC	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	3 cut(s)	8, 119, 355
HphI	GGTGA	1 cut(s)	30
Hpy188I	TCNGA	3 cut(s)	229, 259, 350
Hpy188III	TCNNGA	2 cut(s)	119, 211
Hpy99I	CGWCG	3 cut(s)	49, 140, 143
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	375, 383
HpyF3I	CTNAG	2 cut(s)	256, 288
HspAI	GCGC	1 cut(s)	58
Kpn2I	TCCGGA	1 cut(s)	118
LmnI	GCTCC	2 cut(s)	65, 121
Lsp1109I	GCAGC	2 cut(s)	167, 387
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	98
MboII	GAAGA	7 cut(s)	102, 140, 272, 277, 280, 310, 313
MhlI	GDGCHC	1 cut(s)	126
MnlI	CCTC	5 cut(s)	264, 265, 267, 283, 286
MroI	TCCGGA	1 cut(s)	118
MroXI	GAANNNNTTC	1 cut(s)	203
MspI	CCGG	3 cut(s)	8, 119, 355
MspR9I	CCNGG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	335
NlaIV	GGNNCC	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 144
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	182, 377
Psp124BI	GAGCTC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	241
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	126
SatI	GCNGC	2 cut(s)	181, 376
Sau96I	GGNCC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	5 cut(s)	126, 257, 289, 336, 388
SfaNI	GCATC	1 cut(s)	153
SinI	GGWCC	1 cut(s)	241
SsiI	CCGC	3 cut(s)	27, 167, 341
SspMI	CTAG	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	2 cut(s)	126, 147
TfiI	GAWTC	1 cut(s)	107
TseI	GCWGC	2 cut(s)	180, 375
TspGWI	ACGGA	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.