Rmu_sc0000708.1_g000006

Ribonuclease H protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000708.1
N/A
Physical Location & Seq
Forward (+)
19648 .. 19977
330 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
atggctggggacttcaatgaggtttggtgtagggaagataaatcgggtggtttaccacactctactgctgcaatgaacctgttccagggaacgatgatgaatgcacgcctaatagagatgagttttactggctgttgctatacctggtcgagtaaatttactaaagaaagattggatagagggttccagtcgttgcaatggagggatcgtgacccttttagtcgggtagttacactgcctccgtcgaattctgatcataaccctatacttgtggaagccaaaactgaccagtatccaccaaagcgaaactacaacacacattttttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.62

Weight (kDa)

7.75

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 213
AcsI RAATTY 2 cut(s) 155, 247
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 1 cut(s) 16
AjnI CCWGG 2 cut(s) 84, 143
AloI GAACNNNNNNTCC 2 cut(s) 167, 199
AlwI GGATC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 2 cut(s) 155, 247
Asp700I GAANNNNTTC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 55
BciT130I CCWGG 2 cut(s) 86, 145
BciVI GTATCC 1 cut(s) 303
BclI TGATCA 1 cut(s) 253
BfuI GTATCC 1 cut(s) 303
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 2 cut(s) 86, 145
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 2 cut(s) 86, 145
BsaJI CCNNGG 1 cut(s) 85
BsaXI ACNNNNNCTCC 4 cut(s) 193, 223, 223, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 3 cut(s) 133, 187, 289
Bse3DI GCAATG 2 cut(s) 78, 203
BseBI CCWGG 2 cut(s) 86, 145
BseDI CCNNGG 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMI GCAATG 2 cut(s) 78, 203
BseNI ACTGG 3 cut(s) 133, 187, 289
BseXI GCAGC 1 cut(s) 55
BseYI CCCAGC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 106
Bsp143I GATC 2 cut(s) 205, 253
BspLI GGNNCC 1 cut(s) 185
BspPI GGATC 1 cut(s) 213
BsrDI GCAATG 2 cut(s) 78, 203
BsrI ACTGG 3 cut(s) 133, 187, 289
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 2 cut(s) 205, 253
Bst2UI CCWGG 2 cut(s) 86, 145
BstC8I GCNNGC 1 cut(s) 106
BstENI CCTNNNNNAGG 1 cut(s) 83
BstKTI GATC 2 cut(s) 208, 256
BstMBI GATC 2 cut(s) 205, 253
BstNI CCWGG 2 cut(s) 86, 145
BstSCI CCNGG 2 cut(s) 84, 143
BstV1I GCAGC 1 cut(s) 55
BsuI GTATCC 1 cut(s) 303
BtsI GCAGTG 1 cut(s) 233
BtsIMutI CAGTG 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 106
CsiI ACCWGGT 1 cut(s) 143
CviJI RGCY 3 cut(s) 5, 132, 278
CviKI_1 RGCY 3 cut(s) 5, 132, 278
DpnI GATC 2 cut(s) 207, 255
DpnII GATC 2 cut(s) 205, 253
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoRI GAATTC 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 84, 143
FaiI YATR 3 cut(s) 141, 258, 266
FaqI GGGAC 1 cut(s) 23
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
GsaI CCCAGC 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 53
Hpy99I CGWCG 1 cut(s) 247
HpyCH4V TGCA 3 cut(s) 71, 104, 196
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 2 cut(s) 205, 253
LpnPI CCDG 8 cut(s) 71, 92, 98, 114, 130, 157, 200, 302
Lsp1109I GCAGC 1 cut(s) 55
MabI ACCWGGT 1 cut(s) 143
MaeIII GTNAC 2 cut(s) 209, 229
MalI GATC 2 cut(s) 207, 255
MboI GATC 2 cut(s) 205, 253
MboII GAAGA 1 cut(s) 47
MluCI AATT 2 cut(s) 155, 247
MnlI CCTC 4 cut(s) 13, 173, 195, 249
MroXI GAANNNNTTC 1 cut(s) 80
MspR9I CCNGG 2 cut(s) 86, 145
Mva1269I GAATGC 1 cut(s) 106
MvaI CCWGG 2 cut(s) 86, 145
NdeII GATC 2 cut(s) 205, 253
NlaIV GGNNCC 1 cut(s) 185
NmuCI GTSAC 1 cut(s) 209
PctI GAATGC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 80
PkrI GCNGC 1 cut(s) 70
Psp6I CCWGG 2 cut(s) 84, 143
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 2 cut(s) 84, 143
PspN4I GGNNCC 1 cut(s) 185
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 2 cut(s) 205, 253
ScrFI CCNGG 2 cut(s) 86, 145
SetI ASST 3 cut(s) 24, 81, 146
SexAI ACCWGGT 1 cut(s) 143
Sse9I AATT 2 cut(s) 155, 247
StyD4I CCNGG 2 cut(s) 84, 143
TaqI TCGA 2 cut(s) 149, 245
TasI AATT 2 cut(s) 155, 247
TscAI CASTG 1 cut(s) 240
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 89, 113
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 1 cut(s) 240
XagI CCTNNNNNAGG 1 cut(s) 83
XapI RAATTY 2 cut(s) 155, 247
XmnI GAANNNNTTC 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.