Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000711.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

43711 .. 46067

Gene Structure 2357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000711.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atgtcatcagctaagaacaatcagtcaaatttctcaaggaccttgttagatgaatcaggaacatttcgacggttcacgtggaatgatcaagcacaaaaatggacagaattatggtctgctccgatagagcgttgcgatttttatggacaatgtggtccaaatggtaactgcgatccctatgttactgatactatagattgcatcggccttccggggtttgaacccaagtcgccaactgattggtacttgagagatgggacagatggtagcagcgacaaaactggatgtgtgacatggtatggggaattgatggacacgagggtgcagcccagtaatggtcaaaatttatatgtacgagttgatgcaatcgtctttgctcaatatgcaaagaagtcaaatgattctcttagcaagaaggaaaagctggcaatttcactagtatctgttttagcgctatttctcctagttttccttgtctattggttactgaggatgaagagaaaagacgaaaccaacagagcacatttagattggacaagacgctttgagattatccatggaatcactagaggaattatatatcttcaccaagattcaagattaagaattatccaccgagatctaaaggccagcaatgttctactagatgcttctatgaaccccaaaattgcagattttggtatggctagaatttttaagggagatcaaaatgaagaaaatacaaagcgtgtggttggaacatatggttatatgtcaccagagtatgcaatgcaaggaaggttttcggtgaagtcagatgtttggaacttgtggagtgaaggtaaagtcttgcaaatggttgattcgtccattagtgaatcataccccgtcaatgaagttctgaaatgtattcagattgccttcttgtgcctgcaagagtatccagctgaccggccaaccatgtctgaagttcttttcatgctaggtaacgatgcggacgctcttccttcaccacgaaaacttgcattcttattggagagaagtagcagttctatgggtggcaagttgtcaacccgtgaaggatatcattctctaaataatttcacatgtagtgtggtagaagctaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

369

Amino Acids

42.0

Weight (kDa)

6.95

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	153
AciI	CCGC	1 cut(s)	974
AclWI	GGATC	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	932
AcsI	RAATTY	3 cut(s)	28, 343, 690
AcuI	CTGAAG	1 cut(s)	966
AcvI	CACGTG	1 cut(s)	78
AfaI	GTAC	2 cut(s)	245, 354
AfeI	AGCGCT	1 cut(s)	453
AfiI	CCNNNNNNNGG	1 cut(s)	335
AflIII	ACRYGT	1 cut(s)	1085
AgsI	TTSAA	2 cut(s)	221, 597
AhlI	ACTAGT	1 cut(s)	436
AleI	CACNNNNGTG	1 cut(s)	320
AluBI	AGCT	4 cut(s)	11, 424, 926, 1103
AluI	AGCT	4 cut(s)	11, 424, 926, 1103
Alw21I	GWGCWC	1 cut(s)	523
AlwI	GGATC	1 cut(s)	167
Aor51HI	AGCGCT	1 cut(s)	453
AoxI	GGCC	3 cut(s)	205, 627, 932
ApeKI	GCWGC	2 cut(s)	270, 325
ApoI	RAATTY	3 cut(s)	28, 343, 690
Asp700I	GAANNNNTTC	1 cut(s)	781
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	2 cut(s)	39, 155
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	4 cut(s)	578, 747, 799, 981
AvaII	GGWCC	2 cut(s)	39, 155
BauI	CACGAG	1 cut(s)	316
BbrPI	CACGTG	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	2 cut(s)	282, 337
BccI	CCATC	3 cut(s)	248, 257, 304
BciVI	GTATCC	1 cut(s)	930
BclI	TGATCA	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	213
BcuI	ACTAGT	1 cut(s)	436
BfaI	CTAG	7 cut(s)	437, 464, 567, 644, 687, 962, 1104
BfmI	CTRYAG	1 cut(s)	192
BfoI	RGCGCY	1 cut(s)	455
BfuI	GTATCC	1 cut(s)	930
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	2 cut(s)	271, 326
BlsI	GCNGC	2 cut(s)	272, 327
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	2 cut(s)	39, 155
BmgT120I	GGNCC	2 cut(s)	39, 155
BmrFI	CCNGG	1 cut(s)	213
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	4 cut(s)	210, 352, 637, 961
BmuI	ACTGGG	1 cut(s)	324
BpuEI	CTTGAG	2 cut(s)	19, 268
BpuMI	CCSGG	1 cut(s)	213
BsaAI	YACGTR	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	212, 556
BsaXI	ACNNNNNCTCC	2 cut(s)	805, 835
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse118I	RCCGGY	1 cut(s)	930
Bse1I	ACTGG	2 cut(s)	286, 330
Bse3DI	GCAATG	2 cut(s)	640, 774
BseDI	CCNNGG	2 cut(s)	212, 556
BseGI	GGATG	2 cut(s)	290, 498
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMI	GCAATG	2 cut(s)	640, 774
BseMII	CTCAG	1 cut(s)	479
BseNI	ACTGG	2 cut(s)	286, 330
BseXI	GCAGC	2 cut(s)	282, 337
BsgI	GTGCAG	1 cut(s)	344
BshFI	GGCC	3 cut(s)	207, 629, 934
BsiHKAI	GWGCWC	1 cut(s)	523
BsiSI	CCGG	2 cut(s)	212, 931
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	271
BsmI	GAATGC	1 cut(s)	1004
BsnI	GGCC	3 cut(s)	207, 629, 934
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp143I	GATC	4 cut(s)	85, 172, 619, 703
Bsp19I	CCATGG	1 cut(s)	556
BspACI	CCGC	1 cut(s)	974
BspANI	GGCC	3 cut(s)	207, 629, 934
BspCNI	CTCAG	1 cut(s)	480
BspPI	GGATC	1 cut(s)	167
BspQI	GCTCTTC	1 cut(s)	987
BsrDI	GCAATG	2 cut(s)	640, 774
BsrFI	RCCGGY	1 cut(s)	930
BsrI	ACTGG	2 cut(s)	286, 330
BssAI	RCCGGY	1 cut(s)	930
BssECI	CCNNGG	2 cut(s)	212, 556
BssMI	GATC	4 cut(s)	85, 172, 619, 703
BssSI	CACGAG	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	556
Bst2BI	CACGAG	1 cut(s)	316
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	2 cut(s)	491, 987
BstBAI	YACGTR	1 cut(s)	78
BstC8I	GCNNGC	3 cut(s)	426, 631, 911
BstDEI	CTNAG	3 cut(s)	12, 407, 488
BstDSI	CCRYGG	1 cut(s)	556
BstF5I	GGATG	2 cut(s)	290, 498
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	4 cut(s)	88, 175, 622, 706
BstMBI	GATC	4 cut(s)	85, 172, 619, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	1089
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	282, 337
BstX2I	RGATCY	1 cut(s)	619
BstXI	CCANNNNNNTGG	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	619
BsuI	GTATCC	1 cut(s)	930
BsuRI	GGCC	3 cut(s)	207, 629, 934
BtgI	CCRYGG	1 cut(s)	556
BtsCI	GGATG	2 cut(s)	290, 498
Cac8I	GCNNGC	3 cut(s)	426, 631, 911
CfoI	GCGC	1 cut(s)	454
Cfr10I	RCCGGY	1 cut(s)	930
Cfr13I	GGNCC	2 cut(s)	39, 155
CseI	GACGC	2 cut(s)	549, 986
Csp6I	GTAC	2 cut(s)	244, 353
CspCI	CAANNNNNGTGG	2 cut(s)	711, 746
CviAII	CATG	5 cut(s)	294, 557, 940, 958, 1086
CviJI	RGCY	9 cut(s)	11, 207, 328, 424, 629, 686, 926, 934, 1103
CviKI_1	RGCY	9 cut(s)	11, 207, 328, 424, 629, 686, 926, 934, 1103
CviQI	GTAC	2 cut(s)	244, 353
DdeI	CTNAG	3 cut(s)	12, 407, 488
DpnI	GATC	4 cut(s)	87, 174, 621, 705
DpnII	GATC	4 cut(s)	85, 172, 619, 703
DrdI	GACNNNNNNGTC	1 cut(s)	153
DseDI	GACNNNNNNGTC	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	932
Eam1104I	CTCTTC	2 cut(s)	491, 987
EarI	CTCTTC	2 cut(s)	491, 987
Eco130I	CCWWGG	1 cut(s)	556
Eco32I	GATATC	1 cut(s)	1064
Eco47I	GGWCC	2 cut(s)	39, 155
Eco47III	AGCGCT	1 cut(s)	453
Eco57I	CTGAAG	1 cut(s)	966
Eco72I	CACGTG	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	39
EcoRV	GATATC	1 cut(s)	1064
EcoT14I	CCWWGG	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	5 cut(s)	297, 560, 943, 961, 1089
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	5 cut(s)	293, 556, 939, 957, 1085
FauNDI	CATATG	1 cut(s)	742
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	271, 326
FokI	GGATG	2 cut(s)	297, 505
Fsp4HI	GCNGC	2 cut(s)	271, 326
FspBI	CTAG	7 cut(s)	437, 464, 567, 644, 687, 962, 1104
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	2 cut(s)	271, 326
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	3 cut(s)	207, 629, 934
HapII	CCGG	2 cut(s)	212, 931
HgaI	GACGC	2 cut(s)	549, 986
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	5 cut(s)	297, 560, 943, 961, 1089
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HincII	GTYRAC	1 cut(s)	1050
HindII	GTYRAC	1 cut(s)	1050
HinfI	GANTC	6 cut(s)	53, 401, 561, 593, 842, 857
HpaII	CCGG	2 cut(s)	212, 931
HphI	GGTGA	4 cut(s)	578, 747, 799, 981
Hpy166II	GTNNAC	2 cut(s)	75, 1050
Hpy188I	TCNGA	5 cut(s)	123, 796, 882, 894, 946
Hpy188III	TCNNGA	2 cut(s)	57, 597
Hpy8I	GTNNAC	2 cut(s)	75, 1050
Hpy99I	CGWCG	1 cut(s)	72
HpyAV	CCTTC	7 cut(s)	218, 409, 771, 812, 910, 996, 1052
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	3 cut(s)	12, 407, 488
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	5 cut(s)	297, 560, 943, 961, 1089
HspAI	GCGC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	85, 172, 619, 703
LguI	GCTCTTC	1 cut(s)	987
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	2 cut(s)	282, 337
LweI	GCATC	4 cut(s)	210, 352, 637, 961
MaeI	CTAG	7 cut(s)	437, 464, 567, 644, 687, 962, 1104
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	6 cut(s)	164, 181, 289, 483, 753, 965
MalI	GATC	4 cut(s)	87, 174, 621, 705
MboI	GATC	4 cut(s)	85, 172, 619, 703
MboII	GAAGA	4 cut(s)	508, 575, 725, 974
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	1 cut(s)	523
MmeI	TCCRAC	1 cut(s)	715
MnlI	CCTC	3 cut(s)	312, 483, 563
MroXI	GAANNNNTTC	1 cut(s)	781
MseI	TTAA	2 cut(s)	602, 696
MslI	CAYNNNNRTG	2 cut(s)	97, 320
MspA1I	CMGCKG	1 cut(s)	926
MspI	CCGG	2 cut(s)	212, 931
MspR9I	CCNGG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	1004
MwoI	GCNNNNNNNGC	1 cut(s)	383
NciI	CCSGG	1 cut(s)	213
NcoI	CCATGG	1 cut(s)	556
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	4 cut(s)	85, 172, 619, 703
NlaIII	CATG	5 cut(s)	297, 560, 943, 961, 1089
NmuCI	GTSAC	2 cut(s)	289, 753
NspI	RCATGY	1 cut(s)	1089
OliI	CACNNNNGTG	1 cut(s)	320
PciI	ACATGT	1 cut(s)	1085
PciSI	GCTCTTC	1 cut(s)	987
PctI	GAATGC	1 cut(s)	1004
PdmI	GAANNNNTTC	1 cut(s)	781
PfeI	GAWTC	6 cut(s)	53, 401, 561, 593, 842, 857
PkrI	GCNGC	2 cut(s)	272, 327
PmaCI	CACGTG	1 cut(s)	78
PmlI	CACGTG	1 cut(s)	78
Ppu21I	YACGTR	1 cut(s)	78
PpuMI	RGGWCCY	1 cut(s)	39
PscI	ACATGT	1 cut(s)	1085
Psp5II	RGGWCCY	1 cut(s)	39
PspCI	CACGTG	1 cut(s)	78
PspPI	GGNCC	2 cut(s)	39, 155
PspPPI	RGGWCCY	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	619
PvuII	CAGCTG	1 cut(s)	926
RsaI	GTAC	2 cut(s)	245, 354
RsaNI	GTAC	2 cut(s)	244, 353
RseI	CAYNNNNRTG	2 cut(s)	97, 320
SapI	GCTCTTC	1 cut(s)	987
SaqAI	TTAA	2 cut(s)	602, 696
SatI	GCNGC	2 cut(s)	271, 326
Sau3AI	GATC	4 cut(s)	85, 172, 619, 703
Sau96I	GGNCC	2 cut(s)	39, 155
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	523
SfaNI	GCATC	4 cut(s)	210, 352, 637, 961
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	2 cut(s)	39, 155
SmiMI	CAYNNNNRTG	2 cut(s)	97, 320
SmlI	CTYRAG	2 cut(s)	34, 247
SmoI	CTYRAG	2 cut(s)	34, 247
SpeI	ACTAGT	1 cut(s)	436
SsiI	CCGC	1 cut(s)	974
SspMI	CTAG	7 cut(s)	437, 464, 567, 644, 687, 962, 1104
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	1 cut(s)	67
TfiI	GAWTC	6 cut(s)	53, 401, 561, 593, 842, 857
Tru1I	TTAA	2 cut(s)	602, 696
Tru9I	TTAA	2 cut(s)	602, 696
TseFI	GTSAC	2 cut(s)	289, 753
TseI	GCWGC	2 cut(s)	270, 325
Tsp45I	GTSAC	2 cut(s)	289, 753
TspDTI	ATGAA	6 cut(s)	66, 509, 671, 726, 888, 946
VpaK11BI	GGWCC	2 cut(s)	39, 155
XapI	RAATTY	3 cut(s)	28, 343, 690
XceI	RCATGY	1 cut(s)	1089
XmnI	GAANNNNTTC	1 cut(s)	781
XspI	CTAG	7 cut(s)	437, 464, 567, 644, 687, 962, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.