Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000711.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

75445 .. 76937

Gene Structure 1493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgaacacagctacggatgatgacaatttagaagcggcctttggaacttggaagtccaagacattcgctttgactgtgcccttgacagttgctgctctacgtggctctgtacctccttcatggattaaggaaaaagatcaaagcttcaactcaagtctcatgcaagtctcgagagcgtattttcggatctctcaagagacttcagcaaaggctcggccttcttctgttgcggctgccgatgtagttagtattgtggactcttggctcgatactatggctactgctctattgctgccgtcacgcatctgtttccacttggatccctcatgttcccaattccaaagccctaaccttaatccctccttccctctccgccgtcgctctaaccataggctcactctcacactcgtctcttctgcccacactctcactccgccggagccgccgccgccttctacttccaccaccgtccctcacaccttgcttcggttcgccgcctccgccgccctccttctcgggattgggctcggatgctgcgtcgcctccgcccgctcttctcctctagcccagcctctgccggtgctacaggatcaagctacggatgatgacaatgtagaagcggcgtttggaacttggaagtccaagacattcgctttgactgtgcccttgacagttgctgctctacgtggctctgtacctccttcatggattaaggaaaaagatcaaagcttcaactcaagtctcatgcaagtctcgagagcgtattttcggatctctcaagagacttcagcaaaggctcggccttcttctgttgcggctgccgatgtagttagtattgtggactcttggctcggtcatgctattaacaagggtctaattgagccaattcaaggggtagaagaccaggattggtataaaggattgagtgacagatggaaagtaagaacacaactgctcttccataacatatttcttccccatcccagaaagcttaaattatgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0015695 GO:0015696 GO:0015846 GO:0015847 GO:0019808 GO:0019810 GO:0030288 GO:0030313 GO:0031975 GO:0042597 GO:0043167 GO:0043169 GO:0044464 GO:0051179 GO:0051234 GO:0070405 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP_bac_6

Protein Analysis

334

Amino Acids

36.42

Weight (kDa)

9.13

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	552
AclWI	GGATC	5 cut(s)	194, 314, 327, 597, 779
AcuI	CTGAAG	2 cut(s)	186, 771
AfaI	GTAC	2 cut(s)	111, 696
AfiI	CCNNNNNNNGG	2 cut(s)	486, 890
AgsI	TTSAA	3 cut(s)	148, 733, 890
AjnI	CCWGG	1 cut(s)	903
AjuI	GAANNNNNNNTTGG	4 cut(s)	24, 56, 609, 641
AluBI	AGCT	5 cut(s)	11, 144, 596, 729, 991
AluI	AGCT	5 cut(s)	11, 144, 596, 729, 991
Alw26I	GTCTC	7 cut(s)	161, 172, 191, 415, 746, 757, 776
AlwI	GGATC	5 cut(s)	194, 314, 327, 597, 779
AlwNI	CAGNNNCTG	3 cut(s)	92, 574, 677
Ama87I	CYCGRG	3 cut(s)	169, 515, 754
AoxI	GGCC	3 cut(s)	36, 215, 800
ApeKI	GCWGC	6 cut(s)	92, 233, 292, 534, 677, 818
ArsI	GACNNNNNNTTYG	4 cut(s)	52, 84, 637, 669
AvaI	CYCGRG	3 cut(s)	169, 515, 754
BaeGI	GKGCMC	2 cut(s)	81, 666
BamHI	GGATCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	906
BbvI	GCAGC	6 cut(s)	79, 220, 279, 521, 664, 805
BccI	CCATC	2 cut(s)	927, 987
BceAI	ACGGC	2 cut(s)	280, 360
BciT130I	CCWGG	1 cut(s)	905
BcoDI	GTCTC	7 cut(s)	161, 172, 191, 415, 746, 757, 776
BfaI	CTAG	1 cut(s)	563
BfmI	CTRYAG	1 cut(s)	584
Bme1390I	CCNGG	1 cut(s)	905
BmeT110I	CYCGRG	3 cut(s)	169, 515, 754
BmiI	GGNNCC	2 cut(s)	321, 441
BmrFI	CCNGG	1 cut(s)	905
BmsI	GCATC	2 cut(s)	312, 521
BpiI	GAAGAC	1 cut(s)	906
BpuEI	CTTGAG	4 cut(s)	136, 177, 721, 762
BsaAI	YACGTR	2 cut(s)	101, 686
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	2 cut(s)	486, 890
Bse118I	RCCGGY	1 cut(s)	577
BseBI	CCWGG	1 cut(s)	905
BseGI	GGATG	4 cut(s)	22, 536, 607, 979
BseLI	CCNNNNNNNGG	2 cut(s)	486, 890
BseRI	GAGGAG	1 cut(s)	549
BseSI	GKGCMC	2 cut(s)	81, 666
BseXI	GCAGC	6 cut(s)	79, 220, 279, 521, 664, 805
BseYI	CCCAGC	1 cut(s)	567
BshFI	GGCC	3 cut(s)	38, 217, 802
BsiHKCI	CYCGRG	3 cut(s)	169, 515, 754
BsiSI	CCGG	2 cut(s)	437, 578
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	2 cut(s)	486, 890
BsmAI	GTCTC	7 cut(s)	161, 172, 191, 415, 746, 757, 776
BsmBI	CGTCTC	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	3 cut(s)	38, 217, 802
BsoBI	CYCGRG	3 cut(s)	169, 515, 754
Bsp1286I	GDGCHC	3 cut(s)	81, 528, 666
Bsp143I	GATC	6 cut(s)	136, 186, 319, 589, 721, 771
BspANI	GGCC	3 cut(s)	38, 217, 802
BspLI	GGNNCC	2 cut(s)	321, 441
BspPI	GGATC	5 cut(s)	194, 314, 327, 597, 779
BspQI	GCTCTTC	2 cut(s)	559, 962
BsrBI	CCGCTC	1 cut(s)	552
BsrFI	RCCGGY	1 cut(s)	577
BssAI	RCCGGY	1 cut(s)	577
BssMI	GATC	6 cut(s)	136, 186, 319, 589, 721, 771
Bst2UI	CCWGG	1 cut(s)	905
Bst4CI	ACNGT	5 cut(s)	76, 88, 469, 661, 673
Bst6I	CTCTTC	3 cut(s)	418, 559, 962
BstBAI	YACGTR	2 cut(s)	101, 686
BstC8I	GCNNGC	1 cut(s)	550
BstF5I	GGATG	4 cut(s)	22, 536, 607, 979
BstKTI	GATC	6 cut(s)	139, 189, 322, 592, 724, 774
BstMAI	GTCTC	7 cut(s)	161, 172, 191, 415, 746, 757, 776
BstMBI	GATC	6 cut(s)	136, 186, 319, 589, 721, 771
BstMWI	GCNNNNNNNGC	4 cut(s)	442, 448, 500, 503
BstNI	CCWGG	1 cut(s)	905
BstSCI	CCNGG	1 cut(s)	903
BstSFI	CTRYAG	1 cut(s)	584
BstSLI	GKGCMC	2 cut(s)	81, 666
BstV1I	GCAGC	6 cut(s)	79, 220, 279, 521, 664, 805
BstV2I	GAAGAC	1 cut(s)	906
BstX2I	RGATCY	3 cut(s)	186, 319, 771
BstYI	RGATCY	3 cut(s)	186, 319, 771
BsuRI	GGCC	3 cut(s)	38, 217, 802
BtsCI	GGATG	4 cut(s)	22, 536, 607, 979
Cac8I	GCNNGC	1 cut(s)	550
CaiI	CAGNNNCTG	3 cut(s)	92, 574, 677
Cfr10I	RCCGGY	1 cut(s)	577
CseI	GACGC	1 cut(s)	526
Csp6I	GTAC	2 cut(s)	110, 695
CviAII	CATG	6 cut(s)	120, 160, 327, 705, 745, 857
CviQI	GTAC	2 cut(s)	110, 695
DpnI	GATC	6 cut(s)	138, 188, 321, 591, 723, 773
DpnII	GATC	6 cut(s)	136, 186, 319, 589, 721, 771
Eam1104I	CTCTTC	3 cut(s)	418, 559, 962
EarI	CTCTTC	3 cut(s)	418, 559, 962
EciI	GGCGGA	4 cut(s)	362, 423, 490, 535
Eco24I	GRGCYC	1 cut(s)	528
Eco57I	CTGAAG	2 cut(s)	186, 771
Eco88I	CYCGRG	3 cut(s)	169, 515, 754
EcoRII	CCWGG	1 cut(s)	903
EcoT38I	GRGCYC	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	415
FaeI	CATG	6 cut(s)	123, 163, 330, 708, 748, 860
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	6 cut(s)	119, 159, 326, 704, 744, 856
FauI	CCCGC	1 cut(s)	557
FokI	GGATG	4 cut(s)	29, 543, 614, 966
FriOI	GRGCYC	1 cut(s)	528
FspBI	CTAG	1 cut(s)	563
GsaI	CCCAGC	1 cut(s)	571
HaeIII	GGCC	3 cut(s)	38, 217, 802
HapII	CCGG	2 cut(s)	437, 578
HgaI	GACGC	1 cut(s)	526
Hin1II	CATG	6 cut(s)	123, 163, 330, 708, 748, 860
HindIII	AAGCTT	3 cut(s)	142, 727, 989
HinfI	GANTC	2 cut(s)	257, 842
HpaII	CCGG	2 cut(s)	437, 578
Hpy166II	GTNNAC	2 cut(s)	256, 841
Hpy188I	TCNGA	3 cut(s)	186, 530, 771
Hpy188III	TCNNGA	7 cut(s)	169, 171, 194, 517, 754, 756, 779
Hpy8I	GTNNAC	2 cut(s)	256, 841
Hpy99I	CGWCG	2 cut(s)	381, 542
HpyAV	CCTTC	7 cut(s)	126, 228, 373, 462, 521, 711, 813
HpyCH4III	ACNGT	5 cut(s)	76, 88, 469, 661, 673
HpyCH4IV	ACGT	2 cut(s)	100, 685
HpyCH4V	TGCA	2 cut(s)	163, 748
HpyF10VI	GCNNNNNNNGC	4 cut(s)	442, 448, 500, 503
HpySE526I	ACGT	2 cut(s)	100, 685
Hsp92II	CATG	6 cut(s)	123, 163, 330, 708, 748, 860
Kzo9I	GATC	6 cut(s)	136, 186, 319, 589, 721, 771
LguI	GCTCTTC	2 cut(s)	559, 962
LmnI	GCTCC	1 cut(s)	439
LpnPI	CCDG	7 cut(s)	450, 572, 581, 591, 890, 917, 997
Lsp1109I	GCAGC	6 cut(s)	79, 220, 279, 521, 664, 805
LweI	GCATC	2 cut(s)	312, 521
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	2 cut(s)	100, 685
MaeIII	GTNAC	2 cut(s)	297, 926
MalI	GATC	6 cut(s)	138, 188, 321, 591, 723, 773
MbiI	CCGCTC	1 cut(s)	552
MboI	GATC	6 cut(s)	136, 186, 319, 589, 721, 771
MboII	GAAGA	7 cut(s)	213, 405, 546, 798, 911, 949, 965
MflI	RGATCY	3 cut(s)	186, 319, 771
MhlI	GDGCHC	3 cut(s)	81, 528, 666
MluCI	AATT	5 cut(s)	25, 335, 876, 885, 995
MlyI	GAGTC	2 cut(s)	251, 836
MseI	TTAA	5 cut(s)	126, 354, 711, 864, 993
MspI	CCGG	2 cut(s)	437, 578
MspR9I	CCNGG	1 cut(s)	905
MvaI	CCWGG	1 cut(s)	905
MwoI	GCNNNNNNNGC	4 cut(s)	442, 448, 500, 503
NdeII	GATC	6 cut(s)	136, 186, 319, 589, 721, 771
NlaIII	CATG	6 cut(s)	123, 163, 330, 708, 748, 860
NlaIV	GGNNCC	2 cut(s)	321, 441
NmeAIII	GCCGAG	2 cut(s)	193, 778
NmuCI	GTSAC	2 cut(s)	297, 926
PaeR7I	CTCGAG	2 cut(s)	169, 754
PciSI	GCTCTTC	2 cut(s)	559, 962
PcsI	WCGNNNNNNNCGW	1 cut(s)	534
PleI	GAGTC	2 cut(s)	251, 836
PpsI	GAGTC	2 cut(s)	251, 836
Ppu21I	YACGTR	2 cut(s)	101, 686
Psp6I	CCWGG	1 cut(s)	903
PspFI	CCCAGC	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	903
PspN4I	GGNNCC	2 cut(s)	321, 441
PstNI	CAGNNNCTG	3 cut(s)	92, 574, 677
PsuI	RGATCY	3 cut(s)	186, 319, 771
RsaI	GTAC	2 cut(s)	111, 696
RsaNI	GTAC	2 cut(s)	110, 695
SapI	GCTCTTC	2 cut(s)	559, 962
SaqAI	TTAA	5 cut(s)	126, 354, 711, 864, 993
Sau3AI	GATC	6 cut(s)	136, 186, 319, 589, 721, 771
SchI	GAGTC	2 cut(s)	251, 836
ScrFI	CCNGG	1 cut(s)	905
SduI	GDGCHC	3 cut(s)	81, 528, 666
SfaNI	GCATC	2 cut(s)	312, 521
SfcI	CTRYAG	1 cut(s)	584
Sfr274I	CTCGAG	2 cut(s)	169, 754
SlaI	CTCGAG	2 cut(s)	169, 754
SmlI	CTYRAG	6 cut(s)	151, 169, 192, 736, 754, 777
SmoI	CTYRAG	6 cut(s)	151, 169, 192, 736, 754, 777
Sse9I	AATT	5 cut(s)	25, 335, 876, 885, 995
SspMI	CTAG	1 cut(s)	563
StyD4I	CCNGG	1 cut(s)	903
TaaI	ACNGT	5 cut(s)	76, 88, 469, 661, 673
TaiI	ACGT	2 cut(s)	103, 688
TaqI	TCGA	3 cut(s)	170, 267, 755
TaqII	GACCGA	1 cut(s)	842
TasI	AATT	5 cut(s)	25, 335, 876, 885, 995
TauI	GCSGC	9 cut(s)	38, 233, 445, 448, 451, 497, 506, 623, 818
Tru1I	TTAA	5 cut(s)	126, 354, 711, 864, 993
Tru9I	TTAA	5 cut(s)	126, 354, 711, 864, 993
TseFI	GTSAC	2 cut(s)	297, 926
TseI	GCWGC	6 cut(s)	92, 233, 292, 534, 677, 818
Tsp45I	GTSAC	2 cut(s)	297, 926
TspDTI	ATGAA	3 cut(s)	17, 108, 693
TspGWI	ACGGA	2 cut(s)	29, 614
XhoI	CTCGAG	2 cut(s)	169, 754
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.