Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000711.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

176141 .. 180480

Gene Structure 4340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgtctacgccaaccgtacatgtgagagataccattgagcttgatgaaactgaagagaagatctttgaaaggcttctcggaacgcttgaccattatggacttaagactgagcttcgtgtcgcaggtggatgggtccgtgataagcttctgggaaaagagtgcaaggacattgacattgctttggaagatatgatgggcagcaagtttgttgagaaggtgagagactacttgttgtctgtgggggaagaggttcaaggaatcgctatcatcccaagtaatcccgagttcccgaccaatctaaacatttggaaacagcgacgatgcgcatccttaatcttattttacaatatcaataccaaatccattgaagattggactaatagaggtgcaaggttcggattcatactcgatgaacaactaaaggaagctgctgcctgtgatgaagtgaaagctgctctatcagctaaaattagcagagagcgaattggagctgaagtaagttcctgtctagcatacctttcactgatagttgttctgcagtttactgggaatttaagcttccagagaaaagggagtaataaaatcagacgccgaaatccggtcaccagtccggcagttggattcgggattccggtgactagttgtcggattccggtcaccggtcgccggactccggtcaccggtagcctgagaccgcagccggccactggtcacaggagcacatcaagaatcataatatatcccaagtctgaattctttcgatctcagaattctactaatggcgtcgaagtttctgaacaaagaagggaagagaacgtctggactctggaggggcttagaatggagtgtgagcaagaacgcgaatggaaatggaaggaatgggtgaagattgaagaagaaggaggagaaagaaaaagcaagggagctgttgaagaagcacaggattcaagaatgggaagcattcgagaaggacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

325

Amino Acids

36.85

Weight (kDa)

7.58

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	38 - 96	3.1e-10	Poly A polymerase head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	113
Acc16I	TGCGCA	1 cut(s)	325
Acc36I	ACCTGC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	861
AciI	CCGC	1 cut(s)	695
AcoI	YGGCCR	1 cut(s)	702
AcsI	RAATTY	3 cut(s)	550, 752, 769
AcuI	CTGAAG	2 cut(s)	72, 513
AcyI	GRCGYC	2 cut(s)	589, 783
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	7 cut(s)	598, 617, 659, 666, 673, 680, 707
AflII	CTTAAG	1 cut(s)	101
AflIII	ACRYGT	1 cut(s)	19
AgeI	ACCGGT	2 cut(s)	659, 680
AgsI	TTSAA	6 cut(s)	68, 254, 368, 893, 932, 948
AhdI	GACNNNNNGTC	1 cut(s)	642
AhlI	ACTAGT	1 cut(s)	638
AjuI	GAANNNNNNNTTGG	2 cut(s)	737, 769
AluBI	AGCT	9 cut(s)	40, 112, 145, 428, 452, 464, 491, 558, 926
AluI	AGCT	9 cut(s)	40, 112, 145, 428, 452, 464, 491, 558, 926
Alw21I	GWGCWC	1 cut(s)	722
Alw26I	GTCTC	2 cut(s)	216, 685
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	1 cut(s)	702
ApeKI	GCWGC	5 cut(s)	198, 428, 431, 452, 697
ApoI	RAATTY	3 cut(s)	550, 752, 769
AsiGI	ACCGGT	2 cut(s)	659, 680
Asp700I	GAANNNNTTC	3 cut(s)	72, 249, 756
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	6 cut(s)	229, 595, 646, 649, 670, 895
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	722
BbvI	GCAGC	5 cut(s)	210, 415, 418, 439, 709
BccI	CCATC	2 cut(s)	123, 187
BcoDI	GTCTC	2 cut(s)	216, 685
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	2 cut(s)	509, 639
BfmI	CTRYAG	1 cut(s)	536
BfrI	CTTAAG	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	60
BisI	GCNGC	5 cut(s)	199, 429, 432, 453, 698
BlsI	GCNGC	5 cut(s)	200, 430, 433, 454, 699
Bme18I	GGWCC	1 cut(s)	133
BmeRI	GACNNNNNGTC	1 cut(s)	642
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	134
BmrI	ACTGGG	1 cut(s)	555
BmsI	GCATC	2 cut(s)	311, 335
BmuI	ACTGGG	1 cut(s)	555
BoxI	GACNNNNGTC	1 cut(s)	674
BpmI	CTGGAG	1 cut(s)	848
BsaBI	GATNNNNATC	1 cut(s)	325
BsaHI	GRCGYC	2 cut(s)	589, 783
BsaI	GGTCTC	1 cut(s)	685
BsaWI	WCCGGW	6 cut(s)	598, 631, 652, 659, 673, 680
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	7 cut(s)	598, 617, 659, 666, 673, 680, 707
Bse118I	RCCGGY	3 cut(s)	659, 680, 700
Bse1I	ACTGG	3 cut(s)	550, 606, 712
Bse3DI	GCAATG	1 cut(s)	174
Bse8I	GATNNNNATC	1 cut(s)	325
BseGI	GGATG	3 cut(s)	134, 267, 326
BseJI	GATNNNNATC	1 cut(s)	325
BseLI	CCNNNNNNNGG	7 cut(s)	598, 617, 659, 666, 673, 680, 707
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	3 cut(s)	99, 680, 779
BseNI	ACTGG	3 cut(s)	550, 606, 712
BseRI	GAGGAG	1 cut(s)	918
BseXI	GCAGC	5 cut(s)	210, 415, 418, 439, 709
Bsh1236I	CGCG	1 cut(s)	861
Bsh1285I	CGRYCG	1 cut(s)	664
BshFI	GGCC	1 cut(s)	704
BshTI	ACCGGT	2 cut(s)	659, 680
BsiEI	CGRYCG	1 cut(s)	664
BsiHKAI	GWGCWC	1 cut(s)	722
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	9 cut(s)	599, 611, 632, 653, 660, 667, 674, 681, 701
BslI	CCNNNNNNNGG	7 cut(s)	598, 617, 659, 666, 673, 680, 707
BsmAI	GTCTC	2 cut(s)	216, 685
BsmI	GAATGC	1 cut(s)	960
BsnI	GGCC	1 cut(s)	704
Bso31I	GGTCTC	1 cut(s)	685
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	722
Bsp143I	GATC	2 cut(s)	60, 761
BspACI	CCGC	1 cut(s)	695
BspANI	GGCC	1 cut(s)	704
BspCNI	CTCAG	3 cut(s)	100, 681, 778
BspFNI	CGCG	1 cut(s)	861
BspLI	GGNNCC	1 cut(s)	134
BspMAI	CTGCAG	1 cut(s)	540
BspMI	ACCTGC	1 cut(s)	113
BspTI	CTTAAG	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	685
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	3 cut(s)	659, 680, 700
BsrI	ACTGG	3 cut(s)	550, 606, 712
BssAI	RCCGGY	3 cut(s)	659, 680, 700
BssMI	GATC	2 cut(s)	60, 761
BssNI	GRCGYC	2 cut(s)	589, 783
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	3 cut(s)	48, 240, 804
BstACI	GRCGYC	2 cut(s)	589, 783
BstAFI	CTTAAG	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	702
BstDEI	CTNAG	4 cut(s)	108, 689, 765, 836
BstEII	GGTNACC	3 cut(s)	601, 655, 676
BstF5I	GGATG	3 cut(s)	134, 267, 326
BstFNI	CGCG	1 cut(s)	861
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	2 cut(s)	63, 764
BstMAI	GTCTC	2 cut(s)	216, 685
BstMBI	GATC	2 cut(s)	60, 761
BstMCI	CGRYCG	1 cut(s)	664
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNSI	RCATGY	1 cut(s)	23
BstPAI	GACNNNNGTC	1 cut(s)	674
BstPI	GGTNACC	3 cut(s)	601, 655, 676
BstSFI	CTRYAG	1 cut(s)	536
BstUI	CGCG	1 cut(s)	861
BstV1I	GCAGC	5 cut(s)	210, 415, 418, 439, 709
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	704
BtsCI	GGATG	3 cut(s)	134, 267, 326
BtsIMutI	CAGTG	2 cut(s)	521, 705
BveI	ACCTGC	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	702
CfoI	GCGC	1 cut(s)	326
Cfr10I	RCCGGY	3 cut(s)	659, 680, 700
Cfr13I	GGNCC	1 cut(s)	133
CseI	GACGC	2 cut(s)	597, 772
Csp6I	GTAC	1 cut(s)	17
CspAI	ACCGGT	2 cut(s)	659, 680
CviAII	CATG	1 cut(s)	20
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	4 cut(s)	108, 689, 765, 836
DpnI	GATC	2 cut(s)	62, 763
DpnII	GATC	2 cut(s)	60, 761
DriI	GACNNNNNGTC	1 cut(s)	642
EaeI	YGGCCR	1 cut(s)	702
Eam1104I	CTCTTC	3 cut(s)	48, 240, 804
Eam1105I	GACNNNNNGTC	1 cut(s)	642
EarI	CTCTTC	3 cut(s)	48, 240, 804
Eco31I	GGTCTC	1 cut(s)	685
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	2 cut(s)	72, 513
Eco88I	CYCGRG	1 cut(s)	281
Eco91I	GGTNACC	3 cut(s)	601, 655, 676
EcoO65I	GGTNACC	3 cut(s)	601, 655, 676
EcoRI	GAATTC	2 cut(s)	752, 769
FaeI	CATG	1 cut(s)	23
FaiI	YATR	7 cut(s)	21, 96, 191, 404, 514, 734, 739
FatI	CATG	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	5 cut(s)	199, 429, 432, 453, 698
FokI	GGATG	3 cut(s)	141, 254, 313
Fsp4HI	GCNGC	5 cut(s)	199, 429, 432, 453, 698
FspAI	RTGCGCAY	1 cut(s)	325
FspBI	CTAG	2 cut(s)	509, 639
FspI	TGCGCA	1 cut(s)	325
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	5 cut(s)	199, 429, 432, 453, 698
GsuI	CTGGAG	1 cut(s)	848
HaeIII	GGCC	1 cut(s)	704
HapII	CCGG	9 cut(s)	599, 611, 632, 653, 660, 667, 674, 681, 701
HgaI	GACGC	2 cut(s)	597, 772
HhaI	GCGC	1 cut(s)	326
Hin1I	GRCGYC	2 cut(s)	589, 783
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HindIII	AAGCTT	2 cut(s)	143, 556
HinfI	GANTC	9 cut(s)	258, 399, 621, 628, 649, 670, 729, 823, 944
HpaII	CCGG	9 cut(s)	599, 611, 632, 653, 660, 667, 674, 681, 701
HphI	GGTGA	6 cut(s)	229, 595, 646, 649, 670, 895
Hpy166II	GTNNAC	2 cut(s)	6, 543
Hpy188I	TCNGA	7 cut(s)	80, 398, 587, 648, 751, 768, 796
Hpy188III	TCNNGA	9 cut(s)	281, 289, 562, 625, 726, 820, 827, 948, 965
Hpy8I	GTNNAC	2 cut(s)	6, 543
Hpy99I	CGWCG	2 cut(s)	321, 788
HpyAV	CCTTC	5 cut(s)	208, 798, 868, 893, 962
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	3 cut(s)	162, 389, 538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	4 cut(s)	108, 689, 765, 836
HpySE526I	ACGT	1 cut(s)	816
Hsp92I	GRCGYC	2 cut(s)	589, 783
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	1 cut(s)	324
KroI	GCCGGC	1 cut(s)	700
KroNI	GCCGGC	1 cut(s)	702
Kzo9I	GATC	2 cut(s)	60, 761
LmnI	GCTCC	3 cut(s)	488, 717, 923
Lsp1109I	GCAGC	5 cut(s)	210, 415, 418, 439, 709
LweI	GCATC	2 cut(s)	311, 335
MaeI	CTAG	2 cut(s)	509, 639
MaeII	ACGT	1 cut(s)	816
MaeIII	GTNAC	5 cut(s)	601, 634, 655, 676, 710
MalI	GATC	2 cut(s)	62, 763
MboI	GATC	2 cut(s)	60, 761
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	722
MluCI	AATT	5 cut(s)	468, 483, 550, 752, 769
MlyI	GAGTC	2 cut(s)	664, 817
MmeI	TCCRAC	2 cut(s)	598, 626
MnlI	CCTC	4 cut(s)	241, 377, 823, 896
MroNI	GCCGGC	1 cut(s)	700
MroXI	GAANNNNTTC	3 cut(s)	72, 249, 756
MseI	TTAA	3 cut(s)	102, 332, 554
MspCI	CTTAAG	1 cut(s)	101
MspI	CCGG	9 cut(s)	599, 611, 632, 653, 660, 667, 674, 681, 701
Mva1269I	GAATGC	1 cut(s)	960
MvnI	CGCG	1 cut(s)	861
MwoI	GCNNNNNNNGC	1 cut(s)	461
NaeI	GCCGGC	1 cut(s)	702
NdeII	GATC	2 cut(s)	60, 761
NgoMIV	GCCGGC	1 cut(s)	700
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	134
NmuCI	GTSAC	5 cut(s)	601, 634, 655, 676, 710
NsbI	TGCGCA	1 cut(s)	325
NspI	RCATGY	1 cut(s)	23
PaqCI	CACCTGC	1 cut(s)	113
PciI	ACATGT	1 cut(s)	19
PctI	GAATGC	1 cut(s)	960
PdiI	GCCGGC	1 cut(s)	702
PdmI	GAANNNNTTC	3 cut(s)	72, 249, 756
PfeI	GAWTC	7 cut(s)	258, 399, 621, 628, 649, 729, 944
PinAI	ACCGGT	2 cut(s)	659, 680
PkrI	GCNGC	5 cut(s)	200, 430, 433, 454, 699
PleI	GAGTC	2 cut(s)	664, 817
PpsI	GAGTC	2 cut(s)	664, 817
PscI	ACATGT	1 cut(s)	19
PshAI	GACNNNNGTC	1 cut(s)	674
PspEI	GGTNACC	3 cut(s)	601, 655, 676
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	540
PsuI	RGATCY	1 cut(s)	60
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	102, 332, 554
SatI	GCNGC	5 cut(s)	199, 429, 432, 453, 698
Sau3AI	GATC	2 cut(s)	60, 761
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	2 cut(s)	664, 817
SduI	GDGCHC	1 cut(s)	722
SfaNI	GCATC	2 cut(s)	311, 335
SfcI	CTRYAG	1 cut(s)	536
SinI	GGWCC	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	5 cut(s)	468, 483, 550, 752, 769
SsiI	CCGC	1 cut(s)	695
SspMI	CTAG	2 cut(s)	509, 639
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	4 cut(s)	408, 760, 786, 964
TasI	AATT	5 cut(s)	468, 483, 550, 752, 769
TfiI	GAWTC	7 cut(s)	258, 399, 621, 628, 649, 729, 944
Tru1I	TTAA	3 cut(s)	102, 332, 554
Tru9I	TTAA	3 cut(s)	102, 332, 554
TscAI	CASTG	2 cut(s)	528, 712
TseFI	GTSAC	5 cut(s)	601, 634, 655, 676, 710
TseI	GCWGC	5 cut(s)	198, 428, 431, 452, 697
Tsp45I	GTSAC	5 cut(s)	601, 634, 655, 676, 710
TspDTI	ATGAA	4 cut(s)	60, 391, 426, 456
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	2 cut(s)	528, 712
Vha464I	CTTAAG	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	3 cut(s)	550, 752, 769
XceI	RCATGY	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	3 cut(s)	72, 249, 756
XspI	CTAG	2 cut(s)	509, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.