Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000712.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

57282 .. 58447

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000712.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ctggtgcggtggctgcaggcgggccggtgcgggctggagggaggcgaggccgagtgcggatgggcagctgtggttaggtgtgggctgtgcaggttgcaggcgggctgcgtgaatgcagcagtggtggcggcagtctggtgggcgcgggggcgctggcagatgaggccggacgggctgggctgctggagaagtccggccgatcaaaatagaaaggaggtgttgagttggcaaaagcgatttgacattatcatggggcttgcaagaggattactctacctccaccaagactccagagttagaatcattaacagggaccttaagagtagcaacatcctacttgacgatcagctgaaccccaaaatatccgactttggcatagcaagaattattggaaacaatcaaagtgaagctaaaaccaaacgagtaattggcacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

145

Amino Acids

16.23

Weight (kDa)

9.8

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	81
AccII	CGCG	1 cut(s)	145
AciI	CCGC	7 cut(s)	7, 20, 30, 57, 101, 128, 145
AcoI	YGGCCR	1 cut(s)	195
AflII	CTTAAG	1 cut(s)	317
AluBI	AGCT	3 cut(s)	68, 349, 410
AluI	AGCT	3 cut(s)	68, 349, 410
AoxI	GGCC	4 cut(s)	22, 48, 164, 195
ApeKI	GCWGC	5 cut(s)	13, 65, 105, 116, 180
AspLEI	GCGC	2 cut(s)	145, 153
AspS9I	GGNCC	2 cut(s)	22, 313
AvaII	GGWCC	1 cut(s)	313
BbvI	GCAGC	4 cut(s)	77, 92, 128, 167
BccI	CCATC	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	14
BfoI	RGCGCY	1 cut(s)	154
BfrI	CTTAAG	1 cut(s)	317
BfuAI	ACCTGC	1 cut(s)	81
BglI	GCCNNNNNGGC	1 cut(s)	172
BisI	GCNGC	6 cut(s)	14, 66, 106, 117, 129, 181
BlsI	GCNGC	6 cut(s)	15, 67, 107, 118, 130, 182
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	2 cut(s)	22, 313
BmiI	GGNNCC	1 cut(s)	314
BplI	GAGNNNNNCTC	2 cut(s)	255, 287
BpmI	CTGGAG	3 cut(s)	56, 205, 274
BsaXI	ACNNNNNCTCC	4 cut(s)	261, 272, 291, 302
Bse118I	RCCGGY	1 cut(s)	24
BseGI	GGATG	2 cut(s)	65, 330
BseX3I	CGGCCG	1 cut(s)	195
BseXI	GCAGC	4 cut(s)	77, 92, 128, 167
BseYI	CCCAGC	1 cut(s)	175
BsgI	GTGCAG	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	145
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	4 cut(s)	24, 50, 166, 197
BsiEI	CGRYCG	1 cut(s)	198
BsiSI	CCGG	3 cut(s)	25, 167, 194
BslFI	GGGAC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	4 cut(s)	24, 50, 166, 197
Bsp143I	GATC	2 cut(s)	199, 343
BspACI	CCGC	7 cut(s)	7, 20, 30, 57, 101, 128, 145
BspANI	GGCC	4 cut(s)	24, 50, 166, 197
BspFNI	CGCG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	314
BspMAI	CTGCAG	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	81
BspTI	CTTAAG	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	24
BssMI	GATC	2 cut(s)	199, 343
BstAFI	CTTAAG	1 cut(s)	317
BstC8I	GCNNGC	7 cut(s)	18, 22, 32, 99, 103, 155, 258
BstF5I	GGATG	2 cut(s)	65, 330
BstFNI	CGCG	1 cut(s)	145
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	2 cut(s)	145, 153
BstKTI	GATC	2 cut(s)	202, 346
BstMBI	GATC	2 cut(s)	199, 343
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 125, 163, 172
BstSFI	CTRYAG	1 cut(s)	14
BstUI	CGCG	1 cut(s)	145
BstV1I	GCAGC	4 cut(s)	77, 92, 128, 167
BstZI	CGGCCG	1 cut(s)	195
BsuRI	GGCC	4 cut(s)	24, 50, 166, 197
BtsCI	GGATG	2 cut(s)	65, 330
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	126
BveI	ACCTGC	1 cut(s)	81
Cac8I	GCNNGC	7 cut(s)	18, 22, 32, 99, 103, 155, 258
CfoI	GCGC	2 cut(s)	145, 153
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	22, 313
CviAII	CATG	1 cut(s)	250
DpnI	GATC	2 cut(s)	201, 345
DpnII	GATC	2 cut(s)	199, 343
EaeI	YGGCCR	1 cut(s)	195
EagI	CGGCCG	1 cut(s)	195
EclXI	CGGCCG	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	313
Eco52I	CGGCCG	1 cut(s)	195
EcoO109I	RGGNCCY	1 cut(s)	313
FaeI	CATG	1 cut(s)	253
FaiI	YATR	3 cut(s)	251, 377, 436
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	249
FauI	CCCGC	4 cut(s)	13, 23, 94, 138
Fnu4HI	GCNGC	6 cut(s)	14, 66, 106, 117, 129, 181
FokI	GGATG	2 cut(s)	72, 317
Fsp4HI	GCNGC	6 cut(s)	14, 66, 106, 117, 129, 181
GlaI	GCGC	2 cut(s)	144, 152
GluI	GCNGC	6 cut(s)	14, 66, 106, 117, 129, 181
GsaI	CCCAGC	1 cut(s)	179
GsuI	CTGGAG	3 cut(s)	56, 205, 274
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	4 cut(s)	24, 50, 166, 197
HapII	CCGG	3 cut(s)	25, 167, 194
HhaI	GCGC	2 cut(s)	145, 153
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	2 cut(s)	143, 151
HinP1I	GCGC	2 cut(s)	143, 151
HinfI	GANTC	2 cut(s)	287, 300
HpaII	CCGG	3 cut(s)	25, 167, 194
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	1 cut(s)	291
HpyCH4V	TGCA	5 cut(s)	16, 90, 97, 116, 260
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 125, 163, 172
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	2 cut(s)	143, 151
Kzo9I	GATC	2 cut(s)	199, 343
Lsp1109I	GCAGC	4 cut(s)	77, 92, 128, 167
MalI	GATC	2 cut(s)	201, 345
MboI	GATC	2 cut(s)	199, 343
MluCI	AATT	2 cut(s)	384, 426
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	7 cut(s)	31, 35, 40, 156, 208, 257, 287
MseI	TTAA	2 cut(s)	306, 318
MslI	CAYNNNNRTG	1 cut(s)	248
MspA1I	CMGCKG	2 cut(s)	68, 349
MspCI	CTTAAG	1 cut(s)	317
MspI	CCGG	3 cut(s)	25, 167, 194
Mva1269I	GAATGC	1 cut(s)	118
MvnI	CGCG	1 cut(s)	145
MwoI	GCNNNNNNNGC	4 cut(s)	13, 125, 163, 172
NdeII	GATC	2 cut(s)	199, 343
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	1 cut(s)	314
NmeAIII	GCCGAG	1 cut(s)	76
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	300
PkrI	GCNGC	6 cut(s)	15, 67, 107, 118, 130, 182
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	314
PspPI	GGNCC	2 cut(s)	22, 313
PspPPI	RGGWCCY	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	18
PvuII	CAGCTG	2 cut(s)	68, 349
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	306, 318
SatI	GCNGC	6 cut(s)	14, 66, 106, 117, 129, 181
Sau3AI	GATC	2 cut(s)	199, 343
Sau96I	GGNCC	2 cut(s)	22, 313
SchI	GAGTC	1 cut(s)	281
SetI	ASST	8 cut(s)	70, 80, 95, 219, 279, 318, 351, 412
SfcI	CTRYAG	1 cut(s)	14
SinI	GGWCC	1 cut(s)	313
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	2 cut(s)	384, 426
SsiI	CCGC	7 cut(s)	7, 20, 30, 57, 101, 128, 145
TasI	AATT	2 cut(s)	384, 426
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	300
Tru1I	TTAA	2 cut(s)	306, 318
Tru9I	TTAA	2 cut(s)	306, 318
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	5 cut(s)	13, 65, 105, 116, 180
TspRI	CASTG	1 cut(s)	126
Vha464I	CTTAAG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.