Rmu_sc0000725.1_g000016

source UniProtKB

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000725.1
N/A
Physical Location & Seq
Reverse (-)
80263 .. 80809
547 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
atgtggtgcaaaaacagaagaagaagaccccaaaggttttcagagttcaacattgctgaagcaccaactcaagaagttgaagataaagctaaggagaatgaggaaagggttgttgcaatgaacaatgatatagaggaaatagagcgatggtccatccgaacatgttatggtactccattgggagatgaaaatttgtgtgtttctgtttatgctgcaattgaggagcaggttgtgattccatttccgataaaggatgagattatgacagtgaagcaagctatgaggaactgggtcatgtggccgaaaaacctgatcatttatgatgaaaaggtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

13.22

Weight (kDa)

4.98

Isoelectric Point (pI)

72.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 52 - 106 8.8e-09 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 217
AcoI YGGCCR 1 cut(s) 299
AcsI RAATTY 1 cut(s) 190
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 1 cut(s) 172
AflIII ACRYGT 1 cut(s) 161
AgsI TTSAA 2 cut(s) 49, 80
AluBI AGCT 2 cut(s) 89, 278
AluI AGCT 2 cut(s) 89, 278
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 150
AvaII GGWCC 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 199
BccI CCATC 2 cut(s) 141, 161
BclI TGATCA 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 217
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 298
BmuI ACTGGG 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 293
Bse3DI GCAATG 2 cut(s) 51, 123
BseGI GGATG 2 cut(s) 153, 259
BseMI GCAATG 2 cut(s) 51, 123
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 1 cut(s) 301
BsnI GGCC 1 cut(s) 301
Bsp143I GATC 1 cut(s) 312
BspANI GGCC 1 cut(s) 301
BspMI ACCTGC 1 cut(s) 217
BsrDI GCAATG 2 cut(s) 51, 123
BsrI ACTGG 1 cut(s) 293
BssMI GATC 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 153, 259
BstKTI GATC 1 cut(s) 315
BstMBI GATC 1 cut(s) 312
BstNSI RCATGY 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 1 cut(s) 31
BsuRI GGCC 1 cut(s) 301
BtgZI GCGATG 1 cut(s) 160
BtsCI GGATG 2 cut(s) 153, 259
BtsIMutI CAGTG 1 cut(s) 273
BveI ACCTGC 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 171
CviAII CATG 2 cut(s) 162, 295
CviJI RGCY 3 cut(s) 89, 278, 301
CviKI_1 RGCY 3 cut(s) 89, 278, 301
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 1 cut(s) 90
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
EaeI YGGCCR 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 78
FaeI CATG 2 cut(s) 165, 298
FaiI YATR 9 cut(s) 131, 163, 168, 210, 263, 281, 296, 321, 334
FatI CATG 2 cut(s) 161, 294
FbaI TGATCA 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 2 cut(s) 140, 266
Fsp4HI GCNGC 1 cut(s) 213
GluI GCNGC 1 cut(s) 213
HaeIII GGCC 1 cut(s) 301
Hin1II CATG 2 cut(s) 165, 298
HinfI GANTC 1 cut(s) 235
Hpy188I TCNGA 3 cut(s) 43, 158, 246
Hpy188III TCNNGA 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 3 cut(s) 9, 116, 215
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 2 cut(s) 165, 298
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 1 cut(s) 312
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 3 cut(s) 212, 274, 323
Lsp1109I GCAGC 1 cut(s) 199
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 4 cut(s) 30, 33, 36, 92
MfeI CAATTG 1 cut(s) 216
MluCI AATT 2 cut(s) 190, 216
MnlI CCTC 4 cut(s) 94, 127, 214, 276
MunI CAATTG 1 cut(s) 216
NdeII GATC 1 cut(s) 312
NlaIII CATG 2 cut(s) 165, 298
NspI RCATGY 1 cut(s) 165
PciI ACATGT 1 cut(s) 161
PfeI GAWTC 1 cut(s) 235
PkrI GCNGC 1 cut(s) 214
PscI ACATGT 1 cut(s) 161
PspPI GGNCC 1 cut(s) 150
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 1 cut(s) 150
SetI ASST 6 cut(s) 38, 91, 231, 280, 312, 333
SgeI CNNG 7 cut(s) 83, 174, 239, 287, 301, 307, 322
SinI GGWCC 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 2 cut(s) 190, 216
TaaI ACNGT 1 cut(s) 268
TasI AATT 2 cut(s) 190, 216
TfiI GAWTC 1 cut(s) 235
TscAI CASTG 1 cut(s) 273
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 134, 201
TspRI CASTG 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 1 cut(s) 190
XceI RCATGY 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.