Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000727.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

33773 .. 34381

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgactgttgtaattgtaagtggcacgtatggctgctactccttggccaccaagtcatgctttcggccaataatgagtagccacgtccgcaacgtcccggaggactattggagcaagtacggtgattactatgagaagtcgtactgtggcgacggcgcgtcgtcgtcgtcaaaactggcggtagagactaagtgtttgaaattgtattgcaatggtttggtaggcgaagaggtggttagggattcgaagatggtggtggctggggctggggttgcgatttgtgaccctaaatgtcacatttttctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

102

Amino Acids

11.14

Weight (kDa)

7.53

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	158
AciI	CCGC	2 cut(s)	88, 179
AcoI	YGGCCR	2 cut(s)	45, 65
AfaI	GTAC	2 cut(s)	119, 143
AgsI	TTSAA	1 cut(s)	199
AhdI	GACNNNNNGTC	1 cut(s)	157
AjiI	CACGTC	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	179
AoxI	GGCC	2 cut(s)	45, 65
ApeKI	GCWGC	1 cut(s)	33
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
AspLEI	GCGC	1 cut(s)	158
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	134
AsuII	TTCGAA	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	1 cut(s)	244
BceAI	ACGGC	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	179
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	98
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmgBI	CACGTC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	98
Bpu14I	TTCGAA	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	217
BseDI	CCNNGG	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	20
BseYI	CCCAGC	2 cut(s)	260, 266
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	2 cut(s)	47, 67
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	47, 67
Bsp119I	TTCGAA	1 cut(s)	245
BspACI	CCGC	2 cut(s)	88, 179
BspANI	GGCC	2 cut(s)	47, 67
BspFNI	CGCG	1 cut(s)	158
BspT104I	TTCGAA	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	42
Bst4CI	ACNGT	3 cut(s)	7, 122, 146
Bst6I	CTCTTC	1 cut(s)	222
BstBAI	YACGTR	1 cut(s)	27
BstBI	TTCGAA	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	158
BstMAI	GTCTC	1 cut(s)	179
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 87, 272
BstSCI	CCNGG	1 cut(s)	96
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	47, 67
BtrI	CACGTC	1 cut(s)	85
CfoI	GCGC	1 cut(s)	158
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	2 cut(s)	118, 142
CviAII	CATG	1 cut(s)	57
CviJI	RGCY	6 cut(s)	33, 47, 67, 81, 260, 266
CviKI_1	RGCY	6 cut(s)	33, 47, 67, 81, 260, 266
CviQI	GTAC	2 cut(s)	118, 142
DdeI	CTNAG	1 cut(s)	189
DriI	GACNNNNNGTC	1 cut(s)	157
EaeI	YGGCCR	2 cut(s)	45, 65
Eam1104I	CTCTTC	1 cut(s)	222
Eam1105I	GACNNNNNGTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	1 cut(s)	60
FaiI	YATR	3 cut(s)	30, 58, 132
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	1 cut(s)	56
Fnu4HI	GCNGC	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	34
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	34
GsaI	CCCAGC	2 cut(s)	264, 270
HaeIII	GGCC	2 cut(s)	47, 67
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	147
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	134
Hpy99I	CGWCG	4 cut(s)	155, 163, 166, 169
HpyCH4III	ACNGT	3 cut(s)	7, 122, 146
HpyCH4IV	ACGT	3 cut(s)	26, 84, 93
HpyCH4V	TGCA	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 87, 272
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	3 cut(s)	26, 84, 93
Hsp92II	CATG	1 cut(s)	60
HspAI	GCGC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	4 cut(s)	111, 161, 246, 252
Lsp1109I	GCAGC	1 cut(s)	20
MaeII	ACGT	3 cut(s)	26, 84, 93
MaeIII	GTNAC	2 cut(s)	281, 293
MboII	GAAGA	2 cut(s)	239, 259
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	2 cut(s)	12, 200
MluNI	TGGCCA	1 cut(s)	47
MnlI	CCTC	2 cut(s)	94, 223
Mox20I	TGGCCA	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	47
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	98
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	3 cut(s)	30, 87, 272
NciI	CCSGG	1 cut(s)	98
NlaIII	CATG	1 cut(s)	60
NmuCI	GTSAC	2 cut(s)	281, 293
NspV	TTCGAA	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	242
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	27
PspFI	CCCAGC	2 cut(s)	260, 266
RsaI	GTAC	2 cut(s)	119, 143
RsaNI	GTAC	2 cut(s)	118, 142
SatI	GCNGC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	98
SetI	ASST	4 cut(s)	29, 87, 96, 234
SfuI	TTCGAA	1 cut(s)	245
Sse9I	AATT	2 cut(s)	12, 200
SsiI	CCGC	2 cut(s)	88, 179
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	3 cut(s)	7, 122, 146
TaiI	ACGT	3 cut(s)	29, 87, 96
TaqI	TCGA	1 cut(s)	245
TasI	AATT	2 cut(s)	12, 200
TfiI	GAWTC	1 cut(s)	242
TseFI	GTSAC	2 cut(s)	281, 293
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	2 cut(s)	281, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.