Rmu_sc0000738.1_g000008
ERF Family

Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- like GTPase superfamily. Era GTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000738.1
N/A
Physical Location & Seq
Forward (+)
36742 .. 38666
1925 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1023 bp
atgcccagaatcagaataatgagccagatgaactctggagagctctctttcctcattctctctctctcccctccttctgcctccaaagaagaagcagccgcagccgcagcagcagcccaagaggcggagctacaaaccccaaccattcaggctttagaaataagatcaaaacctaccaccatctcgcaagccaaaacctcgccgtcccaccaccgccggcatacccgccgcttcgagcaaatgctagccatcccaccatccatccatccatcatcccggtcacgccgacaagcaccaccacccctcccaatcaccccactccatatggcggctctaaaccaaatcggagcacacctaaaccaattcaattcaccttccatcacctttccttcctcaaatcggatcacccaaactaaatcaattcaccaccaccctttcttcctcaaatcggaacacccaaaccaaatcaattcaccacaaatcggagcacccaaaccaaatcaattcaccaccgccctgaggctcctctcttccaaacccaccaacatcactccatccccaaccttccttctcctcctccgccgcttctatgccgcccaaccccaacaatccgatcccacccacaccccatcctcctcagaatccgacgccgaaaacagcttcgacagtaccctctatgagttacccaccgctgctttggatttcaaaccccaaaacccgagttgggacgagaagtacagaagcaaagcagatagattggtatctggggatgaggcccacaaagcaaagctgaggtttttgaaggaggaggaggacgagaggaagcggaggctgctcgctaaggcgctgcttgaggcggcgctggagagaggagatgaggaggaatcggacagtgaggaggaggtggtcaaggaggaggaccagaagtcgttgacggttgggattattggggatcccaatgccagaaagtctgcgctgacgaattacatggttggtttctttgagtttgagttttcgggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_2 MMR_HSR1

Protein Analysis

340

Amino Acids

37.93

Weight (kDa)

6.89

Isoelectric Point (pI)

68.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 410, 608, 947, 960
AcyI GRCGYC 1 cut(s) 648
AfaI GTAC 2 cut(s) 670, 737
AfiI CCNNNNNNNGG 7 cut(s) 124, 328, 399, 448, 482, 519, 724
AgsI TTSAA 3 cut(s) 367, 706, 802
AhdI GACNNNNNGTC 1 cut(s) 925
AluBI AGCT 4 cut(s) 43, 130, 660, 790
AluI AGCT 4 cut(s) 43, 130, 660, 790
Alw21I GWGCWC 3 cut(s) 45, 352, 490
AlwI GGATC 4 cut(s) 410, 608, 947, 960
Ama87I CYCGRG 1 cut(s) 718
AoxI GGCC 1 cut(s) 774
ApeKI GCWGC 8 cut(s) 95, 101, 107, 110, 113, 692, 832, 847
AspLEI GCGC 3 cut(s) 847, 862, 976
AspS9I GGNCC 2 cut(s) 775, 919
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 7 cut(s) 304, 363, 373, 397, 416, 465, 499
AsuNHI GCTAGC 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 718
AvaII GGWCC 1 cut(s) 919
AxyI CCTNAGG 1 cut(s) 518
BamHI GGATCC 1 cut(s) 952
BanII GRGCYC 1 cut(s) 45
Bbv12I GWGCWC 3 cut(s) 45, 352, 490
BbvCI CCTCAGC 1 cut(s) 791
BbvI GCAGC 8 cut(s) 107, 113, 119, 122, 125, 679, 819, 834
BccI CCATC 9 cut(s) 188, 257, 265, 269, 273, 277, 386, 562, 637
BceAI ACGGC 1 cut(s) 187
BcnI CCSGG 1 cut(s) 277
BfaI CTAG 1 cut(s) 245
BfoI RGCGCY 2 cut(s) 848, 863
BglI GCCNNNNNGGC 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 919
BmeRI GACNNNNNGTC 1 cut(s) 925
BmeT110I CYCGRG 1 cut(s) 718
BmgT120I GGNCC 2 cut(s) 775, 919
BmiI GGNNCC 2 cut(s) 524, 954
BmrFI CCNGG 1 cut(s) 277
BmtI GCTAGC 1 cut(s) 248
BpmI CTGGAG 2 cut(s) 57, 884
Bpu10I CCTNAGC 2 cut(s) 791, 840
BpuEI CTTGAG 1 cut(s) 872
BpuMI CCSGG 1 cut(s) 277
BsaBI GATNNNNATC 1 cut(s) 760
BsaHI GRCGYC 1 cut(s) 648
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 7 cut(s) 124, 328, 399, 448, 482, 519, 724
Bse118I RCCGGY 1 cut(s) 216
Bse21I CCTNAGG 1 cut(s) 518
Bse8I GATNNNNATC 1 cut(s) 760
BseGI GGATG 8 cut(s) 249, 257, 261, 265, 272, 554, 629, 775
BseJI GATNNNNATC 1 cut(s) 760
BseLI CCNNNNNNNGG 7 cut(s) 124, 328, 399, 448, 482, 519, 724
BseMII CTCAG 3 cut(s) 509, 651, 782
BseXI GCAGC 8 cut(s) 107, 113, 119, 122, 125, 679, 819, 834
BshFI GGCC 1 cut(s) 776
BsiHKAI GWGCWC 3 cut(s) 45, 352, 490
BsiHKCI CYCGRG 1 cut(s) 718
BsiSI CCGG 2 cut(s) 217, 277
BslFI GGGAC 2 cut(s) 190, 740
BslI CCNNNNNNNGG 7 cut(s) 124, 328, 399, 448, 482, 519, 724
BsmFI GGGAC 2 cut(s) 190, 740
BsnI GGCC 1 cut(s) 776
BsoBI CYCGRG 1 cut(s) 718
Bsp1286I GDGCHC 3 cut(s) 45, 352, 490
Bsp143I GATC 4 cut(s) 164, 402, 613, 952
BspANI GGCC 1 cut(s) 776
BspCNI CTCAG 3 cut(s) 510, 650, 783
BspLI GGNNCC 2 cut(s) 524, 954
BspOI GCTAGC 1 cut(s) 248
BspPI GGATC 4 cut(s) 410, 608, 947, 960
BsrFI RCCGGY 1 cut(s) 216
BssAI RCCGGY 1 cut(s) 216
BssMI GATC 4 cut(s) 164, 402, 613, 952
BssNI GRCGYC 1 cut(s) 648
Bst4CI ACNGT 3 cut(s) 668, 893, 937
Bst6I CTCTTC 1 cut(s) 535
BstACI GRCGYC 1 cut(s) 648
BstC8I GCNNGC 4 cut(s) 189, 218, 246, 837
BstDEI CTNAG 4 cut(s) 518, 637, 791, 840
BstF5I GGATG 8 cut(s) 249, 257, 261, 265, 272, 554, 629, 775
BstH2I RGCGCY 2 cut(s) 848, 863
BstHHI GCGC 3 cut(s) 847, 862, 976
BstKTI GATC 4 cut(s) 167, 405, 616, 955
BstMBI GATC 4 cut(s) 164, 402, 613, 952
BstMWI GCNNNNNNNGC 8 cut(s) 101, 104, 107, 110, 113, 122, 782, 832
BstSCI CCNGG 1 cut(s) 275
BstV1I GCAGC 8 cut(s) 107, 113, 119, 122, 125, 679, 819, 834
BstX2I RGATCY 1 cut(s) 952
BstYI RGATCY 1 cut(s) 952
Bsu36I CCTNAGG 1 cut(s) 518
BsuRI GGCC 1 cut(s) 776
BtsCI GGATG 8 cut(s) 249, 257, 261, 265, 272, 554, 629, 775
BtsIMutI CAGTG 1 cut(s) 898
Cac8I GCNNGC 4 cut(s) 189, 218, 246, 837
CfoI GCGC 3 cut(s) 847, 862, 976
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 2 cut(s) 775, 919
CseI GACGC 1 cut(s) 656
Csp6I GTAC 2 cut(s) 669, 736
CviAII CATG 1 cut(s) 988
CviQI GTAC 2 cut(s) 669, 736
DdeI CTNAG 4 cut(s) 518, 637, 791, 840
DpnI GATC 4 cut(s) 166, 404, 615, 954
DpnII GATC 4 cut(s) 164, 402, 613, 952
DriI GACNNNNNGTC 1 cut(s) 925
Eam1104I CTCTTC 1 cut(s) 535
Eam1105I GACNNNNNGTC 1 cut(s) 925
EarI CTCTTC 1 cut(s) 535
EciI GGCGGA 2 cut(s) 140, 569
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 919
Eco53kI GAGCTC 1 cut(s) 43
Eco81I CCTNAGG 1 cut(s) 518
Eco88I CYCGRG 1 cut(s) 718
EcoICRI GAGCTC 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 1 cut(s) 991
FaiI YATR 6 cut(s) 222, 324, 326, 591, 678, 989
FaqI GGGAC 2 cut(s) 190, 740
FatI CATG 1 cut(s) 987
FauI CCCGC 1 cut(s) 233
FauNDI CATATG 1 cut(s) 324
FokI GGATG 8 cut(s) 236, 244, 248, 252, 259, 541, 616, 782
FriOI GRGCYC 1 cut(s) 45
FspBI CTAG 1 cut(s) 245
GlaI GCGC 3 cut(s) 846, 861, 975
GsuI CTGGAG 2 cut(s) 57, 884
HaeII RGCGCY 2 cut(s) 848, 863
HaeIII GGCC 1 cut(s) 776
HapII CCGG 2 cut(s) 217, 277
HgaI GACGC 1 cut(s) 656
HhaI GCGC 3 cut(s) 847, 862, 976
Hin1I GRCGYC 1 cut(s) 648
Hin1II CATG 1 cut(s) 991
Hin6I GCGC 3 cut(s) 845, 860, 974
HinP1I GCGC 3 cut(s) 845, 860, 974
HincII GTYRAC 1 cut(s) 933
HindII GTYRAC 1 cut(s) 933
HinfI GANTC 3 cut(s) 9, 641, 884
HpaII CCGG 2 cut(s) 217, 277
HphI GGTGA 7 cut(s) 304, 363, 373, 397, 416, 465, 499
Hpy166II GTNNAC 1 cut(s) 933
Hpy188I TCNGA 9 cut(s) 14, 347, 402, 451, 485, 613, 640, 646, 889
Hpy188III TCNNGA 1 cut(s) 36
Hpy8I GTNNAC 1 cut(s) 933
Hpy99I CGWCG 1 cut(s) 650
HpyAV CCTTC 6 cut(s) 84, 384, 399, 574, 578, 796
HpyCH4III ACNGT 3 cut(s) 668, 893, 937
HpyF10VI GCNNNNNNNGC 8 cut(s) 101, 104, 107, 110, 113, 122, 782, 832
HpyF3I CTNAG 4 cut(s) 518, 637, 791, 840
Hsp92I GRCGYC 1 cut(s) 648
Hsp92II CATG 1 cut(s) 991
HspAI GCGC 3 cut(s) 845, 860, 974
KroI GCCGGC 1 cut(s) 216
KroNI GCCGGC 1 cut(s) 218
Kzo9I GATC 4 cut(s) 164, 402, 613, 952
LmnI GCTCC 4 cut(s) 127, 347, 485, 528
Lsp1109I GCAGC 8 cut(s) 107, 113, 119, 122, 125, 679, 819, 834
MaeI CTAG 1 cut(s) 245
MaeIII GTNAC 2 cut(s) 279, 681
MalI GATC 4 cut(s) 166, 404, 615, 954
MboI GATC 4 cut(s) 164, 402, 613, 952
MboII GAAGA 3 cut(s) 101, 430, 522
MflI RGATCY 1 cut(s) 952
MhlI GDGCHC 3 cut(s) 45, 352, 490
MluCI AATT 6 cut(s) 362, 367, 420, 469, 503, 982
MmeI TCCRAC 1 cut(s) 669
MroNI GCCGGC 1 cut(s) 216
MseI TTAA 1 cut(s) 1021
MspA1I CMGCKG 1 cut(s) 692
MspI CCGG 2 cut(s) 217, 277
MspR9I CCNGG 1 cut(s) 277
MwoI GCNNNNNNNGC 8 cut(s) 101, 104, 107, 110, 113, 122, 782, 832
NaeI GCCGGC 1 cut(s) 218
NciI CCSGG 1 cut(s) 277
NdeI CATATG 1 cut(s) 324
NdeII GATC 4 cut(s) 164, 402, 613, 952
NgoMIV GCCGGC 1 cut(s) 216
NheI GCTAGC 1 cut(s) 244
NlaIII CATG 1 cut(s) 991
NlaIV GGNNCC 2 cut(s) 524, 954
NmuCI GTSAC 1 cut(s) 279
PdiI GCCGGC 1 cut(s) 218
PfeI GAWTC 3 cut(s) 9, 641, 884
Psp124BI GAGCTC 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 524, 954
PspPI GGNCC 2 cut(s) 775, 919
PsuI RGATCY 1 cut(s) 952
RsaI GTAC 2 cut(s) 670, 737
RsaNI GTAC 2 cut(s) 669, 736
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 1021
Sau3AI GATC 4 cut(s) 164, 402, 613, 952
Sau96I GGNCC 2 cut(s) 775, 919
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 3 cut(s) 45, 352, 490
SinI GGWCC 1 cut(s) 919
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
Sse9I AATT 6 cut(s) 362, 367, 420, 469, 503, 982
SspMI CTAG 1 cut(s) 245
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 275
TaaI ACNGT 3 cut(s) 668, 893, 937
TaqI TCGA 2 cut(s) 234, 663
TasI AATT 6 cut(s) 362, 367, 420, 469, 503, 982
TatI WGTACW 1 cut(s) 735
TauI GCSGC 7 cut(s) 101, 107, 231, 332, 585, 596, 860
TfiI GAWTC 3 cut(s) 9, 641, 884
Tru1I TTAA 1 cut(s) 1021
Tru9I TTAA 1 cut(s) 1021
TscAI CASTG 1 cut(s) 898
TseFI GTSAC 1 cut(s) 279
TseI GCWGC 8 cut(s) 95, 101, 107, 110, 113, 692, 832, 847
Tsp45I GTSAC 1 cut(s) 279
TspDTI ATGAA 1 cut(s) 44
TspRI CASTG 1 cut(s) 898
VpaK11BI GGWCC 1 cut(s) 919
XcmI CCANNNNNNNNNTGG 2 cut(s) 32, 694
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.