Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000741.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3446

Gene Structure 3446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000741.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 350 bp

gaccgccacagcaaggtctgcaccgccaaggccccagggaccagcacgtccagctcgccgcccacaccgccattcaattatacgatgttcaagaccatctcagatacgacaggcccagcatggccgttgattggctcatcaagaaagctaaggccaccatcgacgagctgccaccgtggaacccgaacttaattttgttcagacaacatcttctccgactgtgccgatatccgctgcgcaggacacgcataacgcgagcctccatttctcgatggtggaggcttcgagttctttgtttgctaatcggcgaggcgcaattgtgggcagcagtggagtggtggagttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

115

Amino Acids

13.82

Weight (kDa)

10.52

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
Acc16I	TGCGCA	1 cut(s)	238
AccII	CGCG	1 cut(s)	255
AciI	CCGC	5 cut(s)	4, 24, 59, 68, 232
AcoI	YGGCCR	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	13, 131
AgsI	TTSAA	2 cut(s)	76, 91
AjiI	CACGTC	1 cut(s)	48
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	3 cut(s)	54, 148, 168
AluI	AGCT	3 cut(s)	54, 148, 168
AoxI	GGCC	4 cut(s)	30, 112, 122, 152
ApeKI	GCWGC	3 cut(s)	168, 234, 325
AspLEI	GCGC	2 cut(s)	239, 315
AspS9I	GGNCC	3 cut(s)	31, 39, 113
AvaII	GGWCC	1 cut(s)	39
BbvI	GCAGC	3 cut(s)	155, 221, 337
BccI	CCATC	3 cut(s)	104, 166, 266
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	36
BisI	GCNGC	4 cut(s)	59, 169, 235, 326
BlsI	GCNGC	4 cut(s)	60, 170, 236, 327
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	39
BmgBI	CACGTC	1 cut(s)	48
BmgT120I	GGNCC	3 cut(s)	31, 39, 113
BmiI	GGNNCC	3 cut(s)	33, 40, 181
BmrFI	CCNGG	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	149
BsaJI	CCNNGG	4 cut(s)	27, 34, 35, 175
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 131
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	4 cut(s)	27, 34, 35, 175
BseLI	CCNNNNNNNGG	2 cut(s)	13, 131
BseMII	CTCAG	1 cut(s)	114
BseXI	GCAGC	3 cut(s)	155, 221, 337
BseYI	CCCAGC	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	4 cut(s)	32, 114, 124, 154
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	13, 131
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	4 cut(s)	32, 114, 124, 154
BspACI	CCGC	5 cut(s)	4, 24, 59, 68, 232
BspANI	GGCC	4 cut(s)	32, 114, 124, 154
BspCNI	CTCAG	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	33, 40, 181
BssECI	CCNNGG	4 cut(s)	27, 34, 35, 175
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	176, 221
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstC8I	GCNNGC	2 cut(s)	56, 257
BstDEI	CTNAG	2 cut(s)	100, 149
BstDSI	CCRYGG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	2 cut(s)	239, 315
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 51, 67, 245
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	3 cut(s)	155, 221, 337
BsuRI	GGCC	4 cut(s)	32, 114, 124, 154
BtgI	CCRYGG	1 cut(s)	175
BtrI	CACGTC	1 cut(s)	48
BtsI	GCAGTG	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	335
Cac8I	GCNNGC	2 cut(s)	56, 257
CfoI	GCGC	2 cut(s)	239, 315
Cfr13I	GGNCC	3 cut(s)	31, 39, 113
CviAII	CATG	1 cut(s)	120
DdeI	CTNAG	2 cut(s)	100, 149
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	34
EcoRV	GATATC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	123
FaiI	YATR	3 cut(s)	81, 121, 250
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	1 cut(s)	119
Fnu4HI	GCNGC	4 cut(s)	59, 169, 235, 326
Fsp4HI	GCNGC	4 cut(s)	59, 169, 235, 326
FspI	TGCGCA	1 cut(s)	238
GlaI	GCGC	2 cut(s)	238, 314
GluI	GCNGC	4 cut(s)	59, 169, 235, 326
GsaI	CCCAGC	1 cut(s)	119
HaeIII	GGCC	4 cut(s)	32, 114, 124, 154
HhaI	GCGC	2 cut(s)	239, 315
Hin1II	CATG	1 cut(s)	123
Hin6I	GCGC	2 cut(s)	237, 313
HinP1I	GCGC	2 cut(s)	237, 313
Hpy188I	TCNGA	3 cut(s)	103, 202, 217
Hpy188III	TCNNGA	3 cut(s)	91, 141, 269
Hpy99I	CGWCG	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	176, 221
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 51, 67, 245
HpyF3I	CTNAG	2 cut(s)	100, 149
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	123
HspAI	GCGC	2 cut(s)	237, 313
LpnPI	CCDG	7 cut(s)	21, 48, 55, 64, 96, 129, 225
Lsp1109I	GCAGC	3 cut(s)	155, 221, 337
MaeII	ACGT	1 cut(s)	47
MboII	GAAGA	1 cut(s)	202
MfeI	CAATTG	1 cut(s)	316
MluCI	AATT	3 cut(s)	76, 191, 316
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	3 cut(s)	270, 272, 303
MseI	TTAA	1 cut(s)	190
MspA1I	CMGCKG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	36
MunI	CAATTG	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	4 cut(s)	18, 51, 67, 245
NlaIII	CATG	1 cut(s)	123
NlaIV	GGNNCC	3 cut(s)	33, 40, 181
NsbI	TGCGCA	1 cut(s)	238
PasI	CCCWGGG	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PkrI	GCNGC	4 cut(s)	60, 170, 236, 327
Psp6I	CCWGG	1 cut(s)	34
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	3 cut(s)	33, 40, 181
PspPI	GGNCC	3 cut(s)	31, 39, 113
SaqAI	TTAA	1 cut(s)	190
SatI	GCNGC	4 cut(s)	59, 169, 235, 326
Sau96I	GGNCC	3 cut(s)	31, 39, 113
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	5 cut(s)	18, 50, 56, 150, 170
SinI	GGWCC	1 cut(s)	39
Sse9I	AATT	3 cut(s)	76, 191, 316
SsiI	CCGC	5 cut(s)	4, 24, 59, 68, 232
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	176, 221
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	3 cut(s)	161, 270, 285
TasI	AATT	3 cut(s)	76, 191, 316
TauI	GCSGC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	190
Tru9I	TTAA	1 cut(s)	190
TscAI	CASTG	1 cut(s)	335
TseI	GCWGC	3 cut(s)	168, 234, 325
TspRI	CASTG	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.