Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000745.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

111051 .. 112675

Gene Structure 1625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgaagtcgcctttgcttttctttgaaaatggtcagcctgtggttcctccagtacttcctgatgttggcctcgatatggttatgaaacacatggtaatgtttgtggagaagagactgaagcctggtgcaatcaaattctttcgtactcaatcagctagacattttgaaggaggtgactggaaccaaggtggttcttgtaaccggcaaaaccctttgttgccagcgcaggttgaagaactcttctcattgaagaataatggaacaaatgtagaggcacgactcgtcaatcgacaactttacaaggcccttgaggggtcgggtttccatattttggacataacccacctgagtgagttcagaggagatgcccatccatctgcagctggtgggaagaagcacgatgattgtatgcactgccatcgaagtgttgggtgttcattaagtgtggagctgcctccagattgggatagccgtaggtttatgggatttgctgtgtgtgttgtttttgtactccatgagcaccatcaggttgatgagcttgatattcatcaattcaagaattttaacgctactcatcatcttgtatgttgcctgaagctcaatggaagagaattagaagtatatggcagaaagcctgcatttcgctttagtgaagagttttgccagttggactcagatcacctgtggctattctatgtatctcgtgataaatactttggtacagagtggtggcaaaacagttgcagtcagcttgatttcttaattgaaactagagggccaggtctgaaggtgaaggagtgtggagtccgtctgatatatgagcaagatgtgcaagagttgaaccaaacaaccactcaaatcaagcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

289

Amino Acids

33.23

Weight (kDa)

6.42

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	8 - 138	4.1e-21	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
C-JID	PF20160	139 - 278	3.2e-13	C-JID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	217
AccB7I	CCANNNNNTGG	1 cut(s)	331
AcsI	RAATTY	2 cut(s)	134, 559
AcuI	CTGAAG	3 cut(s)	137, 614, 806
AfaI	GTAC	4 cut(s)	54, 145, 510, 721
AfiI	CCNNNNNNNGG	4 cut(s)	65, 76, 312, 331
AgsI	TTSAA	7 cut(s)	26, 167, 233, 250, 556, 767, 841
AjnI	CCWGG	2 cut(s)	121, 778
AleI	CACNNNNGTG	1 cut(s)	348
AluBI	AGCT	6 cut(s)	155, 383, 451, 538, 598, 751
AluI	AGCT	6 cut(s)	155, 383, 451, 538, 598, 751
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	1 cut(s)	106
AoxI	GGCC	3 cut(s)	67, 303, 776
ApeKI	GCWGC	2 cut(s)	380, 451
ApoI	RAATTY	2 cut(s)	134, 559
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	304, 776
AsuHPI	GGTGA	3 cut(s)	185, 671, 802
BauI	CACGAG	1 cut(s)	702
Bbv12I	GWGCWC	1 cut(s)	522
BbvI	GCAGC	2 cut(s)	392, 438
BccI	CCATC	4 cut(s)	378, 382, 426, 531
BceAI	ACGGC	1 cut(s)	456
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	2 cut(s)	123, 780
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	2 cut(s)	156, 771
BfmI	CTRYAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	2 cut(s)	381, 452
BlsI	GCNGC	2 cut(s)	382, 453
BmcAI	AGTACT	1 cut(s)	54
Bme1390I	CCNGG	2 cut(s)	123, 780
BmgT120I	GGNCC	2 cut(s)	304, 776
BmiI	GGNNCC	2 cut(s)	45, 182
BmrFI	CCNGG	2 cut(s)	123, 780
BmsI	GCATC	1 cut(s)	355
BpmI	CTGGAG	2 cut(s)	33, 441
BpuEI	CTTGAG	1 cut(s)	329
BsaBI	GATNNNNATC	2 cut(s)	369, 546
BsaJI	CCNNGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 76, 312, 331
Bse118I	RCCGGY	1 cut(s)	201
Bse1I	ACTGG	3 cut(s)	50, 182, 664
Bse8I	GATNNNNATC	2 cut(s)	369, 546
BseBI	CCWGG	2 cut(s)	123, 780
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	370
BseJI	GATNNNNATC	2 cut(s)	369, 546
BseLI	CCNNNNNNNGG	4 cut(s)	65, 76, 312, 331
BseMII	CTCAG	2 cut(s)	338, 687
BseNI	ACTGG	3 cut(s)	50, 182, 664
BseRI	GAGGAG	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	392, 438
BshFI	GGCC	3 cut(s)	69, 305, 778
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	4 cut(s)	65, 76, 312, 331
BsmAI	GTCTC	1 cut(s)	106
BsnI	GGCC	3 cut(s)	69, 305, 778
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	1 cut(s)	676
BspANI	GGCC	3 cut(s)	69, 305, 778
BspCNI	CTCAG	2 cut(s)	339, 686
BspLI	GGNNCC	2 cut(s)	45, 182
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	1 cut(s)	217
BsrFI	RCCGGY	1 cut(s)	201
BsrI	ACTGG	3 cut(s)	50, 182, 664
BssAI	RCCGGY	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	676
BssSI	CACGAG	1 cut(s)	702
BssT1I	CCWWGG	1 cut(s)	184
Bst2BI	CACGAG	1 cut(s)	702
Bst2UI	CCWGG	2 cut(s)	123, 780
Bst4CI	ACNGT	1 cut(s)	740
Bst6I	CTCTTC	4 cut(s)	104, 245, 601, 648
BstAPI	GCANNNNNTGC	1 cut(s)	829
BstC8I	GCNNGC	2 cut(s)	222, 636
BstDEI	CTNAG	2 cut(s)	347, 673
BstF5I	GGATG	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	1 cut(s)	679
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	676
BstMWI	GCNNNNNNNGC	1 cut(s)	829
BstNI	CCWGG	2 cut(s)	123, 780
BstSCI	CCNGG	2 cut(s)	121, 778
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	392, 438
BsuRI	GGCC	3 cut(s)	69, 305, 778
BtsCI	GGATG	1 cut(s)	370
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	412
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	2 cut(s)	222, 636
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	304, 776
Csp6I	GTAC	4 cut(s)	53, 144, 509, 720
CviAII	CATG	2 cut(s)	91, 515
CviQI	GTAC	4 cut(s)	53, 144, 509, 720
DdeI	CTNAG	2 cut(s)	347, 673
DpnI	GATC	1 cut(s)	678
DpnII	GATC	1 cut(s)	676
Eam1104I	CTCTTC	4 cut(s)	104, 245, 601, 648
EarI	CTCTTC	4 cut(s)	104, 245, 601, 648
Eco130I	CCWWGG	1 cut(s)	184
Eco57I	CTGAAG	3 cut(s)	137, 614, 806
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	121, 778
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	2 cut(s)	94, 518
FatI	CATG	2 cut(s)	90, 514
Fnu4HI	GCNGC	2 cut(s)	381, 452
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	2 cut(s)	381, 452
FspBI	CTAG	2 cut(s)	156, 771
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	2 cut(s)	381, 452
GsuI	CTGGAG	2 cut(s)	33, 441
HaeIII	GGCC	3 cut(s)	69, 305, 778
HapII	CCGG	1 cut(s)	202
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	2 cut(s)	94, 518
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	3 cut(s)	279, 671, 804
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	3 cut(s)	185, 671, 802
Hpy188I	TCNGA	4 cut(s)	359, 676, 786, 813
Hpy188III	TCNNGA	4 cut(s)	59, 458, 556, 704
HpyAV	CCTTC	3 cut(s)	161, 781, 787
HpyCH4III	ACNGT	1 cut(s)	740
HpyCH4V	TGCA	6 cut(s)	128, 380, 412, 638, 744, 832
HpyF10VI	GCNNNNNNNGC	1 cut(s)	829
HpyF3I	CTNAG	2 cut(s)	347, 673
Hsp92II	CATG	2 cut(s)	94, 518
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	676
LmnI	GCTCC	1 cut(s)	448
Lsp1109I	GCAGC	2 cut(s)	392, 438
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	2 cut(s)	156, 771
MaeIII	GTNAC	2 cut(s)	173, 197
MalI	GATC	1 cut(s)	678
MboI	GATC	1 cut(s)	676
MboII	GAAGA	7 cut(s)	121, 232, 245, 262, 403, 618, 665
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	5 cut(s)	134, 551, 559, 611, 762
MlyI	GAGTC	3 cut(s)	273, 665, 813
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	8 cut(s)	57, 80, 164, 265, 304, 353, 465, 767
MseI	TTAA	3 cut(s)	440, 564, 761
MslI	CAYNNNNRTG	3 cut(s)	95, 348, 423
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	2 cut(s)	123, 780
MvaI	CCWGG	2 cut(s)	123, 780
MwoI	GCNNNNNNNGC	1 cut(s)	829
NdeII	GATC	1 cut(s)	676
NlaIII	CATG	2 cut(s)	94, 518
NlaIV	GGNNCC	2 cut(s)	45, 182
NmuCI	GTSAC	1 cut(s)	173
OliI	CACNNNNGTG	1 cut(s)	348
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	382, 453
PleI	GAGTC	3 cut(s)	273, 665, 812
PpsI	GAGTC	3 cut(s)	273, 665, 812
Psp6I	CCWGG	2 cut(s)	121, 778
PspGI	CCWGG	2 cut(s)	121, 778
PspN4I	GGNNCC	2 cut(s)	45, 182
PspPI	GGNCC	2 cut(s)	304, 776
PstI	CTGCAG	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	4 cut(s)	54, 145, 510, 721
RsaNI	GTAC	4 cut(s)	53, 144, 509, 720
RseI	CAYNNNNRTG	3 cut(s)	95, 348, 423
SaqAI	TTAA	3 cut(s)	440, 564, 761
SatI	GCNGC	2 cut(s)	381, 452
Sau3AI	GATC	1 cut(s)	676
Sau96I	GGNCC	2 cut(s)	304, 776
ScaI	AGTACT	1 cut(s)	54
SchI	GAGTC	3 cut(s)	273, 665, 813
ScrFI	CCNGG	2 cut(s)	123, 780
SduI	GDGCHC	1 cut(s)	522
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	378
SmiMI	CAYNNNNRTG	3 cut(s)	95, 348, 423
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	5 cut(s)	134, 551, 559, 611, 762
SspMI	CTAG	2 cut(s)	156, 771
StyD4I	CCNGG	2 cut(s)	121, 778
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	740
TaqI	TCGA	3 cut(s)	72, 289, 421
TasI	AATT	5 cut(s)	134, 551, 559, 611, 762
TatI	WGTACW	2 cut(s)	52, 508
Tru1I	TTAA	3 cut(s)	440, 564, 761
Tru9I	TTAA	3 cut(s)	440, 564, 761
TscAI	CASTG	1 cut(s)	419
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	380, 451
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	4 cut(s)	17, 98, 426, 536
TspGWI	ACGGA	1 cut(s)	797
TspRI	CASTG	1 cut(s)	419
Van91I	CCANNNNNTGG	1 cut(s)	331
XapI	RAATTY	2 cut(s)	134, 559
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XspI	CTAG	2 cut(s)	156, 771
ZrmI	AGTACT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.