Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000745.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

113329 .. 114294

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgccagcacattcggttcaagttgctcgggtgcctccgttccctcccaacctcacatcttcctctccctcctctgcttcatttccatcttcgccgttctctcttacattagaaacacatcctccgttccctcccaacctcacagctccctcgaattccggaaacccccggatccgacccgacggagctggccgggtcctgcgactactccgatggagcctggatctacgacccgaatgcgtctcccaagtacgacaacacctgcaaggagatcttcaagggctggaattgcatttccagcaacaaatccaacggccgcgaactcgtccagggaggtggaagcctaagcactgtgatctcccgccgttcgatcccgctaggtttcttcacatgtacagagacaccagcattgggtttattggtgattccttgaaccggaatatgtttgtttcgctgttctgttcgttgaaaggcgtgtcgagtgaagtaaagaagtggcggccagttggtgctgatcgcgggttcacatttcttcagtacaatgttacgcttgcgtatcatcggacaaatcttttggctcattacggtaggtggttagccaattctaatggtggcgtgctggaatctcttggatataaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

213

Amino Acids

23.97

Weight (kDa)

10.37

Isoelectric Point (pI)

64.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	120 - 198	4.4e-18	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	270
Acc36I	ACCTGC	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	31
AccII	CGCG	2 cut(s)	319, 519
AccIII	TCCGGA	1 cut(s)	158
AciI	CCGC	5 cut(s)	317, 362, 375, 499, 519
AclWI	GGATC	4 cut(s)	166, 179, 231, 365
AcoI	YGGCCR	3 cut(s)	190, 314, 500
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	518
AfaI	GTAC	3 cut(s)	252, 395, 539
AfiI	CCNNNNNNNGG	2 cut(s)	411, 435
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	4 cut(s)	20, 278, 433, 469
AjnI	CCWGG	2 cut(s)	219, 328
AluBI	AGCT	2 cut(s)	146, 188
AluI	AGCT	2 cut(s)	146, 188
Alw26I	GTCTC	2 cut(s)	247, 393
AlwI	GGATC	4 cut(s)	166, 179, 231, 365
Ama87I	CYCGRG	1 cut(s)	27
Aor13HI	TCCGGA	1 cut(s)	158
AoxI	GGCC	3 cut(s)	190, 314, 500
ApoI	RAATTY	1 cut(s)	154
ArsI	GACNNNNNNTTYG	2 cut(s)	556, 588
AspS9I	GGNCC	1 cut(s)	196
AsuC2I	CCSGG	2 cut(s)	169, 194
AsuHPI	GGTGA	1 cut(s)	434
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	196
BamHI	GGATCC	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	31
BccI	CCATC	2 cut(s)	94, 207
BceAI	ACGGC	3 cut(s)	79, 329, 349
BcgI	CGANNNNNNTGC	2 cut(s)	219, 253
BciT130I	CCWGG	2 cut(s)	221, 330
BcnI	CCSGG	2 cut(s)	169, 194
BcoDI	GTCTC	2 cut(s)	247, 393
BfaI	CTAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	270
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	2 cut(s)	317, 500
BlsI	GCNGC	2 cut(s)	318, 501
Bme1390I	CCNGG	4 cut(s)	169, 194, 221, 330
Bme18I	GGWCC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	4 cut(s)	33, 173, 197, 218
BmrFI	CCNGG	4 cut(s)	169, 194, 221, 330
Bpu10I	CCTNAGC	1 cut(s)	345
BpuMI	CCSGG	2 cut(s)	169, 194
BsaJI	CCNNGG	2 cut(s)	167, 329
BsaWI	WCCGGW	2 cut(s)	158, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	411, 435
Bse1I	ACTGG	1 cut(s)	503
BseAI	TCCGGA	1 cut(s)	158
BseBI	CCWGG	2 cut(s)	221, 330
BseDI	CCNNGG	2 cut(s)	167, 329
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	411, 435
BseNI	ACTGG	1 cut(s)	503
BseRI	GAGGAG	1 cut(s)	61
BseX3I	CGGCCG	1 cut(s)	314
Bsh1236I	CGCG	2 cut(s)	319, 519
Bsh1285I	CGRYCG	1 cut(s)	317
BshFI	GGCC	3 cut(s)	192, 316, 502
BshNI	GGYRCC	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	317
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	4 cut(s)	159, 169, 193, 436
BslI	CCNNNNNNNGG	2 cut(s)	411, 435
BsmAI	GTCTC	2 cut(s)	247, 393
BsmBI	CGTCTC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	3 cut(s)	192, 316, 502
BsoBI	CYCGRG	1 cut(s)	27
Bsp13I	TCCGGA	1 cut(s)	158
Bsp1407I	TGTACA	1 cut(s)	393
Bsp143I	GATC	6 cut(s)	171, 223, 271, 355, 370, 514
BspACI	CCGC	5 cut(s)	317, 362, 375, 499, 519
BspANI	GGCC	3 cut(s)	192, 316, 502
BspEI	TCCGGA	1 cut(s)	158
BspFNI	CGCG	2 cut(s)	319, 519
BspLI	GGNNCC	4 cut(s)	33, 173, 197, 218
BspMI	ACCTGC	1 cut(s)	270
BspPI	GGATC	4 cut(s)	166, 179, 231, 365
BspT107I	GGYRCC	1 cut(s)	31
BsrGI	TGTACA	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	503
BssECI	CCNNGG	2 cut(s)	167, 329
BssMI	GATC	6 cut(s)	171, 223, 271, 355, 370, 514
Bst2UI	CCWGG	2 cut(s)	221, 330
Bst4CI	ACNGT	2 cut(s)	353, 587
BstAUI	TGTACA	1 cut(s)	393
BstC8I	GCNNGC	4 cut(s)	6, 190, 552, 617
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	2 cut(s)	319, 519
BstKTI	GATC	6 cut(s)	174, 226, 274, 358, 373, 517
BstMAI	GTCTC	2 cut(s)	247, 393
BstMBI	GATC	6 cut(s)	171, 223, 271, 355, 370, 514
BstMCI	CGRYCG	1 cut(s)	317
BstMWI	GCNNNNNNNGC	2 cut(s)	289, 298
BstNI	CCWGG	2 cut(s)	221, 330
BstNSI	RCATGY	1 cut(s)	394
BstSCI	CCNGG	4 cut(s)	167, 192, 219, 328
BstUI	CGCG	2 cut(s)	319, 519
BstX2I	RGATCY	3 cut(s)	171, 223, 271
BstXI	CCANNNNNNTGG	1 cut(s)	336
BstYI	RGATCY	3 cut(s)	171, 223, 271
BstZI	CGGCCG	1 cut(s)	314
BsuRI	GGCC	3 cut(s)	192, 316, 502
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	349
BveI	ACCTGC	1 cut(s)	270
Cac8I	GCNNGC	4 cut(s)	6, 190, 552, 617
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	3 cut(s)	251, 394, 538
CviAII	CATG	1 cut(s)	391
CviQI	GTAC	3 cut(s)	251, 394, 538
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	6 cut(s)	173, 225, 273, 357, 372, 516
DpnII	GATC	6 cut(s)	171, 223, 271, 355, 370, 514
EaeI	YGGCCR	3 cut(s)	190, 314, 500
EagI	CGGCCG	1 cut(s)	314
EclXI	CGGCCG	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	196
Eco52I	CGGCCG	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	518
Eco88I	CYCGRG	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	154
EcoRII	CCWGG	2 cut(s)	219, 328
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	1 cut(s)	394
FaiI	YATR	3 cut(s)	392, 443, 636
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	1 cut(s)	390
FauI	CCCGC	3 cut(s)	369, 382, 512
Fnu4HI	GCNGC	2 cut(s)	317, 500
FokI	GGATG	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	317, 500
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	2 cut(s)	317, 500
HaeIII	GGCC	3 cut(s)	192, 316, 502
HapII	CCGG	4 cut(s)	159, 169, 193, 436
HgaI	GACGC	1 cut(s)	229
Hin1II	CATG	1 cut(s)	394
HinfI	GANTC	2 cut(s)	425, 623
HpaII	CCGG	4 cut(s)	159, 169, 193, 436
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	1 cut(s)	525
Hpy188I	TCNGA	3 cut(s)	176, 212, 564
Hpy188III	TCNNGA	1 cut(s)	159
Hpy8I	GTNNAC	1 cut(s)	525
Hpy99I	CGWCG	1 cut(s)	185
HpyCH4III	ACNGT	2 cut(s)	353, 587
HpyCH4V	TGCA	2 cut(s)	265, 292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	289, 298
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	394
Kpn2I	TCCGGA	1 cut(s)	158
Kzo9I	GATC	6 cut(s)	171, 223, 271, 355, 370, 514
LmnI	GCTCC	3 cut(s)	151, 185, 216
MaeI	CTAG	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	6 cut(s)	173, 225, 273, 357, 372, 516
MboI	GATC	6 cut(s)	171, 223, 271, 355, 370, 514
MboII	GAAGA	5 cut(s)	51, 81, 266, 377, 524
MflI	RGATCY	3 cut(s)	171, 223, 271
MluCI	AATT	3 cut(s)	154, 287, 601
MmeI	TCCRAC	2 cut(s)	199, 334
MroI	TCCGGA	1 cut(s)	158
MspI	CCGG	4 cut(s)	159, 169, 193, 436
MspR9I	CCNGG	4 cut(s)	169, 194, 221, 330
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	2 cut(s)	221, 330
MvnI	CGCG	2 cut(s)	319, 519
MwoI	GCNNNNNNNGC	2 cut(s)	289, 298
NciI	CCSGG	2 cut(s)	169, 194
NdeII	GATC	6 cut(s)	171, 223, 271, 355, 370, 514
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	4 cut(s)	33, 173, 197, 218
NspI	RCATGY	1 cut(s)	394
PaqCI	CACCTGC	1 cut(s)	270
PciI	ACATGT	1 cut(s)	390
PctI	GAATGC	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	425, 623
PkrI	GCNGC	2 cut(s)	318, 501
PpuMI	RGGWCCY	1 cut(s)	196
PscI	ACATGT	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	2 cut(s)	219, 328
PspGI	CCWGG	2 cut(s)	219, 328
PspN4I	GGNNCC	4 cut(s)	33, 173, 197, 218
PspPI	GGNCC	1 cut(s)	196
PspPPI	RGGWCCY	1 cut(s)	196
PsuI	RGATCY	3 cut(s)	171, 223, 271
RsaI	GTAC	3 cut(s)	252, 395, 539
RsaNI	GTAC	3 cut(s)	251, 394, 538
SatI	GCNGC	2 cut(s)	317, 500
Sau3AI	GATC	6 cut(s)	171, 223, 271, 355, 370, 514
Sau96I	GGNCC	1 cut(s)	196
ScrFI	CCNGG	4 cut(s)	169, 194, 221, 330
SetI	ASST	8 cut(s)	54, 141, 148, 190, 264, 338, 383, 593
SinI	GGWCC	1 cut(s)	196
Sse9I	AATT	3 cut(s)	154, 287, 601
SsiI	CCGC	5 cut(s)	317, 362, 375, 499, 519
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	4 cut(s)	167, 192, 219, 328
TaaI	ACNGT	2 cut(s)	353, 587
TaqI	TCGA	3 cut(s)	152, 369, 479
TasI	AATT	3 cut(s)	154, 287, 601
TatI	WGTACW	2 cut(s)	393, 537
TauI	GCSGC	2 cut(s)	319, 502
TfiI	GAWTC	2 cut(s)	425, 623
TscAI	CASTG	1 cut(s)	356
TspDTI	ATGAA	1 cut(s)	69
TspGWI	ACGGA	3 cut(s)	27, 114, 198
TspRI	CASTG	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	1 cut(s)	394
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.