Rmu_sc0000765.1_g000030

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000765.1
N/A
Physical Location & Seq
Reverse (-)
121115 .. 121855
741 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
atgcttaccgtgacagcttcaagaacactccggggtgtttatcctcctgtagaggagtacgtgaaacatgttgataaaacacacatgacccttgtggaggctttcaggaacttgcaagtgaatgaagagaacttgcaaatggatgaagagcagccccatgaaaatggagactcaatgcatgaggtttctgaactgaatggggaacactctagaggaacatgcagctga

Protein Analysis

75

Amino Acids

8.58

Weight (kDa)

4.89

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 97
AflIII ACRYGT 1 cut(s) 67
AgsI TTSAA 1 cut(s) 21
AluBI AGCT 2 cut(s) 17, 225
AluI AGCT 2 cut(s) 17, 225
Alw26I GTCTC 1 cut(s) 162
ApeKI GCWGC 2 cut(s) 151, 222
AsuC2I CCSGG 1 cut(s) 32
BbvI GCAGC 1 cut(s) 163
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 2 cut(s) 152, 223
BlsI GCNGC 2 cut(s) 153, 224
Bme1390I CCNGG 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 32
BsaAI YACGTR 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 162
BspQI GCTCTTC 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 31
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 2 cut(s) 120, 141
BstBAI YACGTR 1 cut(s) 61
BstENI CCTNNNNNAGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 162
BstNSI RCATGY 2 cut(s) 71, 222
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 148
Csp6I GTAC 1 cut(s) 58
CviAII CATG 5 cut(s) 68, 85, 158, 179, 219
CviJI RGCY 4 cut(s) 17, 101, 154, 225
CviKI_1 RGCY 4 cut(s) 17, 101, 154, 225
CviQI GTAC 1 cut(s) 58
Eam1104I CTCTTC 2 cut(s) 120, 141
EarI CTCTTC 2 cut(s) 120, 141
EcoNI CCTNNNNNAGG 1 cut(s) 95
EcoT22I ATGCAT 1 cut(s) 180
FaeI CATG 5 cut(s) 71, 88, 161, 182, 222
FaiI YATR 5 cut(s) 69, 86, 159, 180, 220
FatI CATG 5 cut(s) 67, 84, 157, 178, 218
Fnu4HI GCNGC 2 cut(s) 152, 223
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 152, 223
FspBI CTAG 1 cut(s) 210
GluI GCNGC 2 cut(s) 152, 223
HapII CCGG 1 cut(s) 31
Hin1II CATG 5 cut(s) 71, 88, 161, 182, 222
HinfI GANTC 1 cut(s) 170
HpaII CCGG 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 3 cut(s) 21, 106, 210
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 4 cut(s) 115, 136, 178, 222
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 5 cut(s) 71, 88, 161, 182, 222
LguI GCTCTTC 1 cut(s) 141
LpnPI CCDG 3 cut(s) 44, 60, 91
Lsp1109I GCAGC 1 cut(s) 163
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 10
MboII GAAGA 2 cut(s) 137, 158
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 5 cut(s) 46, 54, 91, 175, 206
Mph1103I ATGCAT 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 225
MspI CCGG 1 cut(s) 31
MspR9I CCNGG 1 cut(s) 32
NciI CCSGG 1 cut(s) 32
NlaIII CATG 5 cut(s) 71, 88, 161, 182, 222
NmuCI GTSAC 1 cut(s) 10
NsiI ATGCAT 1 cut(s) 180
NspI RCATGY 2 cut(s) 71, 222
PciI ACATGT 1 cut(s) 67
PciSI GCTCTTC 1 cut(s) 141
PkrI GCNGC 2 cut(s) 153, 224
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Ppu21I YACGTR 1 cut(s) 61
PscI ACATGT 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 225
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 141
SatI GCNGC 2 cut(s) 152, 223
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 32
SetI ASST 4 cut(s) 19, 63, 186, 227
SfcI CTRYAG 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 162
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 63
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 2 cut(s) 151, 222
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 3 cut(s) 138, 159, 174
XagI CCTNNNNNAGG 1 cut(s) 95
XbaI TCTAGA 1 cut(s) 209
XceI RCATGY 2 cut(s) 71, 222
XspI CTAG 1 cut(s) 210
Zsp2I ATGCAT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.