Rmu_sc0000776.1_g000002

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000776.1
N/A
Physical Location & Seq
Forward (+)
2954 .. 5186
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 855 bp
atgggtatcgatttggtcgccggcggcaagagcaagaacaccaagcgtacatcgactaggtctgaggatatctacctcaagctcacagtcaagctctatgatttcatccaccgaaggaccaagagtcatttcagcaaggtgattcgtcacaggctttgcatgagcaaggtcaacaaggcccctctctcgctttcccgattgattcggtatatgcagggccatgaggataagattgctgtgctcgtcggaactgtcacggacgatgttctcgtcgccgaagtcactgctctcaggttcaccgagagggctagggctcgcattgagaaggctggtagagagtgcttgacttttgaccaattggctcttagagctcctcttggccaaaacacgatgcttctgagaggaccaaagaatgcccgtgaagctgtgaagcattttggtccagcacctggtgtcccacacagccacaccaagccatatgtgcgatcaaagggcaggaaattcgagaaggccagaggaaaaaggaacagccgtggtttccgtgtgaggaccactaggactgagtccgagggcgtggttgcagcagtgccaccaaatgacgtgaaacaaagcttcaccgacgcgtctcctcttcctcatcatgctagtggtcatcggtcgtcatgccgtggccggaaaaggaagaaccgatgccgtgaagtttactgtagcagctcgagttttctggaaaattttccagattccgaccaacccaggcggagtttcttggcctattttgcaagcttgagccgtagaccacattcctccaagctttcttccagaaaacgcaaagaaaacgatggattgaaggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18

Protein Analysis

284

Amino Acids

32.14

Weight (kDa)

10.89

Isoelectric Point (pI)

55.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18 PF17135 2 - 182 6.8e-79 Ribosomal protein 60S L18 and 50S L18e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 449
AccI GTMKAC 1 cut(s) 793
AccII CGCG 1 cut(s) 623
AciI CCGC 2 cut(s) 24, 757
AcoI YGGCCR 2 cut(s) 379, 670
AcsI RAATTY 2 cut(s) 500, 730
AdeI CACNNNGTG 1 cut(s) 452
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 449
AflIII ACRYGT 1 cut(s) 621
AgsI TTSAA 1 cut(s) 847
AhdI GACNNNNNGTC 1 cut(s) 123
AjiI CACGTC 1 cut(s) 601
AjnI CCWGG 2 cut(s) 448, 752
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 8 cut(s) 82, 94, 371, 425, 612, 714, 783, 811
AluI AGCT 8 cut(s) 82, 94, 371, 425, 612, 714, 783, 811
Alw21I GWGCWC 2 cut(s) 243, 373
Alw26I GTCTC 1 cut(s) 630
AlwNI CAGNNNCTG 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 715
AoxI GGCC 6 cut(s) 177, 217, 379, 510, 670, 768
ApeKI GCWGC 2 cut(s) 581, 711
ApoI RAATTY 2 cut(s) 500, 730
Asp700I GAANNNNTTC 1 cut(s) 732
AspS9I GGNCC 6 cut(s) 117, 178, 217, 404, 440, 549
AsuHPI GGTGA 3 cut(s) 151, 289, 607
AvaI CYCGRG 1 cut(s) 715
AvaII GGWCC 4 cut(s) 117, 404, 440, 549
BalI TGGCCA 1 cut(s) 381
BanII GRGCYC 2 cut(s) 316, 373
Bbv12I GWGCWC 2 cut(s) 243, 373
BbvI GCAGC 2 cut(s) 593, 723
BccI CCATC 1 cut(s) 833
BceAI ACGGC 4 cut(s) 516, 651, 678, 774
BcgI CGANNNNNNTGC 4 cut(s) 266, 300, 484, 518
BciT130I CCWGG 2 cut(s) 450, 754
BcoDI GTCTC 1 cut(s) 630
BfaI CTAG 4 cut(s) 57, 309, 555, 645
BfmI CTRYAG 1 cut(s) 706
BisI GCNGC 3 cut(s) 25, 582, 712
BlsI GCNGC 3 cut(s) 26, 583, 713
Bme1390I CCNGG 2 cut(s) 450, 754
Bme18I GGWCC 4 cut(s) 117, 404, 440, 549
BmeRI GACNNNNNGTC 1 cut(s) 123
BmeT110I CYCGRG 1 cut(s) 715
BmgBI CACGTC 1 cut(s) 601
BmgT120I GGNCC 6 cut(s) 117, 178, 217, 404, 440, 549
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 2 cut(s) 450, 754
BmsI GCATC 2 cut(s) 381, 680
BpuEI CTTGAG 2 cut(s) 62, 805
Bsa29I ATCGAT 1 cut(s) 9
BsaJI CCNNGG 4 cut(s) 532, 567, 667, 752
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse118I RCCGGY 1 cut(s) 20
BseBI CCWGG 2 cut(s) 450, 754
BseCI ATCGAT 1 cut(s) 9
BseDI CCNNGG 4 cut(s) 532, 567, 667, 752
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 4 cut(s) 54, 304, 389, 552
BseRI GAGGAG 2 cut(s) 363, 618
BseXI GCAGC 2 cut(s) 593, 723
Bsh1236I CGCG 1 cut(s) 623
Bsh1285I CGRYCG 1 cut(s) 659
BshFI GGCC 6 cut(s) 179, 219, 381, 512, 672, 770
BshVI ATCGAT 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 659
BsiHKAI GWGCWC 2 cut(s) 243, 373
BsiHKCI CYCGRG 1 cut(s) 715
BsiSI CCGG 2 cut(s) 21, 673
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 630
BsmBI CGTCTC 1 cut(s) 630
BsmFI GGGAC 1 cut(s) 440
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 6 cut(s) 179, 219, 381, 512, 672, 770
BsoBI CYCGRG 1 cut(s) 715
Bsp1286I GDGCHC 3 cut(s) 243, 316, 373
Bsp143I GATC 1 cut(s) 485
BspACI CCGC 2 cut(s) 24, 757
BspANI GGCC 6 cut(s) 179, 219, 381, 512, 672, 770
BspCNI CTCAG 4 cut(s) 55, 303, 390, 553
BspDI ATCGAT 1 cut(s) 9
BspFNI CGCG 1 cut(s) 623
BspLI GGNNCC 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 4 cut(s) 532, 567, 667, 752
BssMI GATC 1 cut(s) 485
Bst2UI CCWGG 2 cut(s) 450, 754
Bst4CI ACNGT 3 cut(s) 88, 253, 707
Bst6I CTCTTC 1 cut(s) 636
BstC8I GCNNGC 3 cut(s) 22, 316, 781
BstDEI CTNAG 5 cut(s) 63, 290, 365, 398, 561
BstDSI CCRYGG 2 cut(s) 532, 667
BstF5I GGATG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 623
BstKTI GATC 1 cut(s) 488
BstMAI GTCTC 1 cut(s) 630
BstMBI GATC 1 cut(s) 485
BstMCI CGRYCG 1 cut(s) 659
BstMWI GCNNNNNNNGC 5 cut(s) 30, 368, 422, 481, 776
BstNI CCWGG 2 cut(s) 450, 754
BstSCI CCNGG 2 cut(s) 448, 752
BstSFI CTRYAG 1 cut(s) 706
BstUI CGCG 1 cut(s) 623
BstV1I GCAGC 2 cut(s) 593, 723
Bsu15I ATCGAT 1 cut(s) 9
BsuRI GGCC 6 cut(s) 179, 219, 381, 512, 672, 770
BsuTUI ATCGAT 1 cut(s) 9
BtgI CCRYGG 2 cut(s) 532, 667
BtrI CACGTC 1 cut(s) 601
BtsCI GGATG 1 cut(s) 105
BtsI GCAGTG 2 cut(s) 282, 591
BtsIMutI CAGTG 2 cut(s) 282, 591
Cac8I GCNNGC 3 cut(s) 22, 316, 781
CaiI CAGNNNCTG 1 cut(s) 449
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 6 cut(s) 117, 178, 217, 404, 440, 549
ClaI ATCGAT 1 cut(s) 9
CseI GACGC 2 cut(s) 612, 629
CsiI ACCWGGT 1 cut(s) 448
Csp6I GTAC 1 cut(s) 48
CviAII CATG 4 cut(s) 160, 221, 641, 663
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 5 cut(s) 63, 290, 365, 398, 561
DpnI GATC 1 cut(s) 487
DpnII GATC 1 cut(s) 485
DraIII CACNNNGTG 1 cut(s) 452
DriI GACNNNNNGTC 1 cut(s) 123
EaeI YGGCCR 2 cut(s) 379, 670
Eam1104I CTCTTC 1 cut(s) 636
Eam1105I GACNNNNNGTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 636
EciI GGCGGA 1 cut(s) 772
Ecl136II GAGCTC 1 cut(s) 371
Eco24I GRGCYC 2 cut(s) 316, 373
Eco32I GATATC 1 cut(s) 70
Eco47I GGWCC 4 cut(s) 117, 404, 440, 549
Eco53kI GAGCTC 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 715
EcoICRI GAGCTC 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 2 cut(s) 448, 752
EcoRV GATATC 1 cut(s) 70
EcoT38I GRGCYC 2 cut(s) 316, 373
Esp3I CGTCTC 1 cut(s) 630
FaeI CATG 4 cut(s) 163, 224, 644, 666
FaiI YATR 9 cut(s) 99, 161, 210, 212, 222, 478, 480, 642, 664
FaqI GGGAC 1 cut(s) 440
FatI CATG 4 cut(s) 159, 220, 640, 662
FauNDI CATATG 1 cut(s) 478
FblI GTMKAC 1 cut(s) 793
Fnu4HI GCNGC 3 cut(s) 25, 582, 712
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 2 cut(s) 316, 373
Fsp4HI GCNGC 3 cut(s) 25, 582, 712
FspBI CTAG 4 cut(s) 57, 309, 555, 645
GluI GCNGC 3 cut(s) 25, 582, 712
HaeIII GGCC 6 cut(s) 179, 219, 381, 512, 672, 770
HapII CCGG 2 cut(s) 21, 673
HgaI GACGC 2 cut(s) 612, 629
Hin1II CATG 4 cut(s) 163, 224, 644, 666
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 3 cut(s) 610, 781, 809
HinfI GANTC 5 cut(s) 124, 142, 202, 563, 740
HpaII CCGG 2 cut(s) 21, 673
HphI GGTGA 3 cut(s) 151, 289, 607
Hpy166II GTNNAC 4 cut(s) 172, 297, 703, 794
Hpy188I TCNGA 5 cut(s) 64, 248, 399, 568, 745
Hpy188III TCNNGA 5 cut(s) 195, 505, 725, 737, 819
Hpy8I GTNNAC 4 cut(s) 172, 297, 703, 794
Hpy99I CGWCG 3 cut(s) 248, 275, 623
HpyAV CCTTC 4 cut(s) 108, 319, 502, 841
HpyCH4III ACNGT 3 cut(s) 88, 253, 707
HpyCH4IV ACGT 1 cut(s) 600
HpyCH4V TGCA 4 cut(s) 159, 214, 581, 779
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 368, 422, 481, 776
HpyF3I CTNAG 5 cut(s) 63, 290, 365, 398, 561
HpySE526I ACGT 1 cut(s) 600
Hsp92II CATG 4 cut(s) 163, 224, 644, 666
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 1 cut(s) 485
LmnI GCTCC 1 cut(s) 376
Lsp1109I GCAGC 2 cut(s) 593, 723
LweI GCATC 2 cut(s) 381, 680
MabI ACCWGGT 1 cut(s) 448
MaeI CTAG 4 cut(s) 57, 309, 555, 645
MaeII ACGT 1 cut(s) 600
MaeIII GTNAC 3 cut(s) 146, 253, 280
MalI GATC 1 cut(s) 487
MboI GATC 1 cut(s) 485
MboII GAAGA 3 cut(s) 623, 694, 807
MfeI CAATTG 1 cut(s) 356
MhlI GDGCHC 3 cut(s) 243, 316, 373
MlsI TGGCCA 1 cut(s) 381
MluCI AATT 3 cut(s) 356, 500, 730
MluI ACGCGT 1 cut(s) 621
MluNI TGGCCA 1 cut(s) 381
MlyI GAGTC 2 cut(s) 133, 572
MmeI TCCRAC 2 cut(s) 226, 768
Mox20I TGGCCA 1 cut(s) 381
MreI CGCCGGCG 1 cut(s) 20
MroNI GCCGGC 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 732
MscI TGGCCA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 645
Msp20I TGGCCA 1 cut(s) 381
MspI CCGG 2 cut(s) 21, 673
MspR9I CCNGG 2 cut(s) 450, 754
MunI CAATTG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 418
MvaI CCWGG 2 cut(s) 450, 754
MvnI CGCG 1 cut(s) 623
MwoI GCNNNNNNNGC 5 cut(s) 30, 368, 422, 481, 776
NaeI GCCGGC 1 cut(s) 22
NdeI CATATG 1 cut(s) 478
NdeII GATC 1 cut(s) 485
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 4 cut(s) 163, 224, 644, 666
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 3 cut(s) 146, 253, 280
PaeR7I CTCGAG 1 cut(s) 715
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PctI GAATGC 1 cut(s) 418
PdiI GCCGGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 732
PfeI GAWTC 3 cut(s) 142, 202, 740
PflFI GACNNNGTC 2 cut(s) 58, 562
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 3 cut(s) 26, 583, 713
PleI GAGTC 2 cut(s) 132, 571
PpsI GAGTC 2 cut(s) 132, 571
Psp124BI GAGCTC 1 cut(s) 373
Psp6I CCWGG 2 cut(s) 448, 752
PspGI CCWGG 2 cut(s) 448, 752
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 6 cut(s) 117, 178, 217, 404, 440, 549
PspXI VCTCGAGB 1 cut(s) 715
PstNI CAGNNNCTG 1 cut(s) 449
PsyI GACNNNGTC 2 cut(s) 58, 562
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
RseI CAYNNNNRTG 1 cut(s) 645
SacI GAGCTC 1 cut(s) 373
SatI GCNGC 3 cut(s) 25, 582, 712
Sau3AI GATC 1 cut(s) 485
Sau96I GGNCC 6 cut(s) 117, 178, 217, 404, 440, 549
SchI GAGTC 2 cut(s) 133, 572
ScrFI CCNGG 2 cut(s) 450, 754
SduI GDGCHC 3 cut(s) 243, 316, 373
SexAI ACCWGGT 1 cut(s) 448
SfaNI GCATC 2 cut(s) 381, 680
SfcI CTRYAG 1 cut(s) 706
Sfr274I CTCGAG 1 cut(s) 715
SgrAI CRCCGGYG 1 cut(s) 20
SinI GGWCC 4 cut(s) 117, 404, 440, 549
SlaI CTCGAG 1 cut(s) 715
SmiMI CAYNNNNRTG 1 cut(s) 645
SmlI CTYRAG 3 cut(s) 77, 715, 784
SmoI CTYRAG 3 cut(s) 77, 715, 784
Sse9I AATT 3 cut(s) 356, 500, 730
SsiI CCGC 2 cut(s) 24, 757
SspMI CTAG 4 cut(s) 57, 309, 555, 645
SstI GAGCTC 1 cut(s) 373
StyD4I CCNGG 2 cut(s) 448, 752
TaaI ACNGT 3 cut(s) 88, 253, 707
TaiI ACGT 1 cut(s) 603
TaqI TCGA 4 cut(s) 9, 53, 504, 716
TaqII GACCGA 1 cut(s) 645
TasI AATT 3 cut(s) 356, 500, 730
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 3 cut(s) 142, 202, 740
TscAI CASTG 2 cut(s) 289, 591
TseFI GTSAC 3 cut(s) 146, 253, 280
TseI GCWGC 2 cut(s) 581, 711
Tsp45I GTSAC 3 cut(s) 146, 253, 280
TspDTI ATGAA 1 cut(s) 94
TspGWI ACGGA 2 cut(s) 272, 530
TspRI CASTG 2 cut(s) 289, 591
Tth111I GACNNNGTC 2 cut(s) 58, 562
Van91I CCANNNNNTGG 1 cut(s) 449
VpaK11BI GGWCC 4 cut(s) 117, 404, 440, 549
XapI RAATTY 2 cut(s) 500, 730
XhoI CTCGAG 1 cut(s) 715
XmiI GTMKAC 1 cut(s) 793
XmnI GAANNNNTTC 1 cut(s) 732
XspI CTAG 4 cut(s) 57, 309, 555, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.