Rmu_sc0000778.1_g000014

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000778.1
N/A
Physical Location & Seq
Reverse (-)
53896 .. 54305
410 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
atgtttctgaggcgacatattgatcttagcctacgctgggagtaccttcagttgaagacacccaaagaactgtgggatgcccttaagggacgttttggaaacattcatgacactttgctcccagaactggccgttcagtggaatgaaatccgcttgcttgactggctggagtatgaccacaaaggaatcacaaccttcaataagttgatcagcctaccgcaagtggctgagaggcataatgagattctcttgaacaacaatgtcaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

10.76

Weight (kDa)

6.91

Isoelectric Point (pI)

69.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 151, 218
AcoI YGGCCR 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 32
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 3 cut(s) 37, 127, 138
AflII CTTAAG 1 cut(s) 83
AgsI TTSAA 3 cut(s) 55, 199, 253
AoxI GGCC 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 116
BclI TGATCA 1 cut(s) 207
BfrI CTTAAG 1 cut(s) 83
BmsI GCATC 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 188
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 127, 138
Bse1I ACTGG 2 cut(s) 132, 167
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 3 cut(s) 37, 127, 138
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 2 cut(s) 132, 167
BseYI CCCAGC 1 cut(s) 36
BshFI GGCC 1 cut(s) 131
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 3 cut(s) 37, 127, 138
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 22, 207
BspACI CCGC 2 cut(s) 151, 218
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 220
BspHI TCATGA 1 cut(s) 106
BspTI CTTAAG 1 cut(s) 83
BsrI ACTGG 2 cut(s) 132, 167
BssMI GATC 2 cut(s) 22, 207
Bst4CI ACNGT 1 cut(s) 72
BstAFI CTTAAG 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 3 cut(s) 8, 26, 228
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 2 cut(s) 25, 210
BstMBI GATC 2 cut(s) 22, 207
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 155
CciI TCATGA 1 cut(s) 106
Csp6I GTAC 1 cut(s) 43
CviAII CATG 1 cut(s) 107
CviJI RGCY 5 cut(s) 30, 131, 166, 213, 227
CviKI_1 RGCY 5 cut(s) 30, 131, 166, 213, 227
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 3 cut(s) 8, 26, 228
DpnI GATC 2 cut(s) 24, 209
DpnII GATC 2 cut(s) 22, 207
EaeI YGGCCR 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 32
FaeI CATG 1 cut(s) 110
FaiI YATR 4 cut(s) 18, 108, 174, 237
FaqI GGGAC 1 cut(s) 102
FatI CATG 1 cut(s) 106
FbaI TGATCA 1 cut(s) 207
FokI GGATG 1 cut(s) 89
GsaI CCCAGC 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 1 cut(s) 131
Hin1II CATG 1 cut(s) 110
HinfI GANTC 2 cut(s) 186, 244
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 107, 250
HpyAV CCTTC 2 cut(s) 56, 205
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 3 cut(s) 8, 26, 228
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 2 cut(s) 22, 207
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 6 cut(s) 22, 113, 135, 148, 152, 250
LweI GCATC 1 cut(s) 67
MaeII ACGT 1 cut(s) 91
MalI GATC 2 cut(s) 24, 209
MboI GATC 2 cut(s) 22, 207
MboII GAAGA 1 cut(s) 67
MnlI CCTC 2 cut(s) 3, 225
MseI TTAA 1 cut(s) 84
MspCI CTTAAG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 163
NdeII GATC 2 cut(s) 22, 207
NlaIII CATG 1 cut(s) 110
PagI TCATGA 1 cut(s) 106
PfeI GAWTC 2 cut(s) 186, 244
PspFI CCCAGC 1 cut(s) 36
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 84
Sau3AI GATC 2 cut(s) 22, 207
SetI ASST 4 cut(s) 48, 94, 197, 269
SfaNI GCATC 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SsiI CCGC 2 cut(s) 151, 218
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 1 cut(s) 94
TfiI GAWTC 2 cut(s) 186, 244
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 95, 159
TspRI CASTG 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.