Rmu_sc0000795.1_g000063

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000795.1
N/A
Physical Location & Seq
Forward (+)
320808 .. 321125
318 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
atgtcgaatgaacctagactcgactttcccatgcttgactcaacaggctcggattaccacagttgggtaaccgatgttgagaaccacctcacttcaaagggaatattacccataatccaggcacataacccggatcttgtgttcgtgcgaacacctacaaagcatgctcaagcatttatctttatgcgacgccatatggacaagacactcagattggagtatatgtcgatcaagaatgcaagagagctatgggtagcgctagaagagcgctttggcaatgtccaagattcccacctccctgacttgaaggttcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

105

Amino Acids

12.27

Weight (kDa)

6.27

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 190
AfeI AGCGCT 2 cut(s) 258, 269
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 3 cut(s) 96, 307, 314
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
AlwI GGATC 1 cut(s) 141
Aor51HI AGCGCT 2 cut(s) 258, 269
AspLEI GCGC 2 cut(s) 259, 270
AsuC2I CCSGG 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 2 cut(s) 15, 260
BfoI RGCGCY 2 cut(s) 260, 271
Bme1390I CCNGG 2 cut(s) 119, 131
BmrFI CCNGG 2 cut(s) 119, 131
BpuEI CTTGAG 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 223
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 64
BsmI GAATGC 1 cut(s) 241
Bsp143I GATC 2 cut(s) 133, 228
BspCNI CTCAG 1 cut(s) 222
BspPI GGATC 1 cut(s) 141
BspQI GCTCTTC 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 283
BssMI GATC 2 cut(s) 133, 228
BssNI GRCGYC 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 258
BstACI GRCGYC 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 209
BstEII GGTNACC 1 cut(s) 67
BstH2I RGCGCY 2 cut(s) 260, 271
BstHHI GCGC 2 cut(s) 259, 270
BstKTI GATC 2 cut(s) 136, 231
BstMBI GATC 2 cut(s) 133, 228
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 117, 129
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 2 cut(s) 259, 270
CseI GACGC 1 cut(s) 198
CviAII CATG 2 cut(s) 31, 164
CviJI RGCY 2 cut(s) 48, 247
CviKI_1 RGCY 2 cut(s) 48, 247
DdeI CTNAG 1 cut(s) 209
DpnI GATC 2 cut(s) 135, 230
DpnII GATC 2 cut(s) 133, 228
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco47III AGCGCT 2 cut(s) 258, 269
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 117
FaeI CATG 2 cut(s) 34, 167
FatI CATG 2 cut(s) 30, 163
FauNDI CATATG 1 cut(s) 195
FspBI CTAG 2 cut(s) 15, 260
GlaI GCGC 2 cut(s) 258, 269
HaeII RGCGCY 2 cut(s) 260, 271
HapII CCGG 1 cut(s) 131
HgaI GACGC 1 cut(s) 198
HhaI GCGC 2 cut(s) 259, 270
Hin1I GRCGYC 1 cut(s) 190
Hin1II CATG 2 cut(s) 34, 167
Hin6I GCGC 2 cut(s) 257, 268
HinP1I GCGC 2 cut(s) 257, 268
HinfI GANTC 3 cut(s) 18, 38, 287
HpaII CCGG 1 cut(s) 131
Hpy188I TCNGA 2 cut(s) 52, 212
Hpy188III TCNNGA 1 cut(s) 232
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 1 cut(s) 209
Hsp92I GRCGYC 1 cut(s) 190
Hsp92II CATG 2 cut(s) 34, 167
HspAI GCGC 2 cut(s) 257, 268
Kzo9I GATC 2 cut(s) 133, 228
LguI GCTCTTC 1 cut(s) 258
LpnPI CCDG 5 cut(s) 30, 104, 131, 144, 312
MaeI CTAG 2 cut(s) 15, 260
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 135, 230
MboI GATC 2 cut(s) 133, 228
MboII GAAGA 1 cut(s) 275
MflI RGATCY 1 cut(s) 133
MlyI GAGTC 2 cut(s) 12, 32
MnlI CCTC 2 cut(s) 98, 305
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 2 cut(s) 119, 131
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 265
NciI CCSGG 1 cut(s) 131
NdeI CATATG 1 cut(s) 195
NdeII GATC 2 cut(s) 133, 228
NlaIII CATG 2 cut(s) 34, 167
NspI RCATGY 1 cut(s) 167
PaeI GCATGC 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 258
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 287
PleI GAGTC 2 cut(s) 12, 32
PpsI GAGTC 2 cut(s) 12, 32
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 117
PsuI RGATCY 1 cut(s) 133
SapI GCTCTTC 1 cut(s) 258
Sau3AI GATC 2 cut(s) 133, 228
SchI GAGTC 2 cut(s) 12, 32
ScrFI CCNGG 2 cut(s) 119, 131
SetI ASST 6 cut(s) 16, 90, 157, 249, 297, 312
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 167
SspI AATATT 1 cut(s) 105
SspMI CTAG 2 cut(s) 15, 260
StyD4I CCNGG 2 cut(s) 117, 129
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 3 cut(s) 5, 21, 227
TfiI GAWTC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 24
XceI RCATGY 1 cut(s) 167
XspI CTAG 2 cut(s) 15, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.