Rmu_sc0000795.1_g000123

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000795.1
N/A
Physical Location & Seq
Reverse (-)
555673 .. 556017
345 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
atgttcactcttctcatgccattaaatggctttctagagtaccaaaagaggtattggacaaaaaaaagtcctgcttggaataaaggacgtcacatatgttactcaaactccacagatgaagtagtgagggcttacgaagctcaatatgctgagggcatggaatacttcctgcatgctagggcacacgaaattgtgtatggaggactgatgctacttacttttccaggcagccctaacggctgtgggggtagtcaacgattttggcataccattgtgacggttcaccttcgccataagtacgcgggtaatgacgatcgtaaatccggcgataactaccgttgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

114

Amino Acids

13.26

Weight (kDa)

9.03

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 19 - 79 2.8e-15 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 91
AccB7I CCANNNNNTGG 1 cut(s) 26
AccII CGCG 1 cut(s) 302
AciI CCGC 1 cut(s) 302
AcyI GRCGYC 1 cut(s) 88
AfaI GTAC 2 cut(s) 41, 299
AfiI CCNNNNNNNGG 1 cut(s) 26
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 184
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 240
BceAI ACGGC 1 cut(s) 253
BciT130I CCWGG 1 cut(s) 225
BfaI CTAG 2 cut(s) 35, 177
BglI GCCNNNNNGGC 1 cut(s) 237
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
Bme1390I CCNGG 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 88
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 141
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 302
Bsh1285I CGRYCG 1 cut(s) 316
BsiEI CGRYCG 1 cut(s) 316
BsiSI CCGG 1 cut(s) 324
BslI CCNNNNNNNGG 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 1 cut(s) 313
BspACI CCGC 1 cut(s) 302
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 1 cut(s) 302
BssMI GATC 1 cut(s) 313
BssNI GRCGYC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 2 cut(s) 280, 338
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 150
BstFNI CGCG 1 cut(s) 302
BstKTI GATC 1 cut(s) 316
BstMBI GATC 1 cut(s) 313
BstMCI CGRYCG 1 cut(s) 316
BstMWI GCNNNNNNNGC 3 cut(s) 137, 146, 237
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 184
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 174
Csp6I GTAC 2 cut(s) 40, 298
CviAII CATG 3 cut(s) 16, 157, 173
CviJI RGCY 5 cut(s) 30, 131, 140, 231, 240
CviKI_1 RGCY 5 cut(s) 30, 131, 140, 231, 240
CviQI GTAC 2 cut(s) 40, 298
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 223
FaeI CATG 3 cut(s) 19, 160, 176
FaiI YATR 9 cut(s) 17, 95, 97, 147, 158, 174, 198, 267, 294
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FatI CATG 3 cut(s) 15, 156, 172
FauI CCCGC 1 cut(s) 295
FauNDI CATATG 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 229
Fsp4HI GCNGC 1 cut(s) 229
FspBI CTAG 2 cut(s) 35, 177
GluI GCNGC 1 cut(s) 229
HapII CCGG 1 cut(s) 324
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 3 cut(s) 19, 160, 176
HincII GTYRAC 1 cut(s) 254
HindII GTYRAC 1 cut(s) 254
HpaII CCGG 1 cut(s) 324
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 3 cut(s) 6, 254, 283
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 3 cut(s) 6, 254, 283
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 2 cut(s) 280, 338
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 146, 237
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 88
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 3 cut(s) 19, 160, 176
Kzo9I GATC 1 cut(s) 313
LpnPI CCDG 5 cut(s) 84, 182, 210, 237, 337
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 1 cut(s) 198
MaeI CTAG 2 cut(s) 35, 177
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 3 cut(s) 89, 98, 274
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 1 cut(s) 189
MnlI CCTC 4 cut(s) 42, 120, 145, 194
MseI TTAA 2 cut(s) 23, 343
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 3 cut(s) 137, 146, 237
NdeI CATATG 1 cut(s) 95
NdeII GATC 1 cut(s) 313
NlaIII CATG 3 cut(s) 19, 160, 176
NmuCI GTSAC 2 cut(s) 89, 274
NspI RCATGY 1 cut(s) 176
PaeI GCATGC 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 26
PkrI GCNGC 1 cut(s) 230
Ple19I CGATCG 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PvuI CGATCG 1 cut(s) 316
RsaI GTAC 2 cut(s) 41, 299
RsaNI GTAC 2 cut(s) 40, 298
SaqAI TTAA 2 cut(s) 23, 343
SatI GCNGC 1 cut(s) 229
Sau3AI GATC 1 cut(s) 313
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 184
SetI ASST 4 cut(s) 53, 91, 142, 288
SfaNI GCATC 1 cut(s) 198
SphI GCATGC 1 cut(s) 176
Sse9I AATT 1 cut(s) 189
SsiI CCGC 1 cut(s) 302
SspMI CTAG 2 cut(s) 35, 177
StyD4I CCNGG 1 cut(s) 223
TaaI ACNGT 2 cut(s) 280, 338
TaiI ACGT 1 cut(s) 91
TasI AATT 1 cut(s) 189
Tru1I TTAA 2 cut(s) 23, 343
Tru9I TTAA 2 cut(s) 23, 343
TseFI GTSAC 2 cut(s) 89, 274
TseI GCWGC 1 cut(s) 228
Tsp45I GTSAC 2 cut(s) 89, 274
TspDTI ATGAA 1 cut(s) 132
Van91I CCANNNNNTGG 1 cut(s) 26
XbaI TCTAGA 1 cut(s) 34
XceI RCATGY 1 cut(s) 176
XspI CTAG 2 cut(s) 35, 177
ZraI GACGTC 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.