Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000796.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1162 .. 6162

Gene Structure 5001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atgtcttcttcgactttcgctttcggattctctaaaactggatatgcattgttattgcaaattcctgatacgagaattgcatctgatgggtctgatcagggattaaaatggtggcggcaagctggatttactccaaatttgattgcacctgattggaggcaagctctgtcccttaagaagatagttgaggatcaaattgctaaagatggctttattggaataggcctcactgctagtgctattggacttatagcaggtgggattgttgctgccttggttcgcagcttgggttcatcggagcaggtaaaatggcggagagcatcgccagaggagtcgtccgatcaggcatcctccccccagatcgcatcactacctcccactccagctccattcgacgccaagctttcgagtccttcggcgtccacctcctccctcacaacgacgacgtttggccccttcccctcctctttcttcttcgttttctttgtctctcatcatgtggttgaagagagtgatgtcatcattttcgccgtcaaacctcaagttgttttgagcttgggaggagctgcaacagaacaagatggagacttaatagctgaattatttggatcagtaggcaagatttggagagccgatgaaaaattgtttgatgcaattactggcctaagtggcagtggtcctgcatatatatatttggctatagaggctttggcagatggaggagttgctgcaggtctaccgcgagaacttgcattgggtctagcatctcaaactgtattaggagcagcatctatggctactagttccgggaagcatccaggtcagctaaaagatgatgtaacatcacctggtggaactaccattactggcattcatgagctggagaagggtggatttcgtggaatattgatgaatgcagtcgttgctgctgccaggcgcagccaagaactttcacagagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

320

Amino Acids

33.29

Weight (kDa)

5.28

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P5CR_dimer	PF14748	213 - 317	7.4e-42	Pyrroline-5-carboxylate reductase dimerisation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	245
Acc36I	ACCTGC	3 cut(s)	245, 292, 722
AccI	GTMKAC	1 cut(s)	736
AccII	CGCG	1 cut(s)	742
AciI	CCGC	3 cut(s)	115, 313, 740
AclWI	GGATC	2 cut(s)	198, 616
AcsI	RAATTY	2 cut(s)	60, 136
AcyI	GRCGYC	2 cut(s)	396, 419
AdeI	CACNNNGTG	1 cut(s)	851
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	506
AhlI	ACTAGT	1 cut(s)	800
AjnI	CCWGG	3 cut(s)	817, 847, 932
Alw26I	GTCTC	2 cut(s)	493, 579
AlwI	GGATC	2 cut(s)	198, 616
AoxI	GGCC	3 cut(s)	223, 451, 661
ApeKI	GCWGC	8 cut(s)	269, 282, 566, 728, 785, 926, 929, 939
ApoI	RAATTY	2 cut(s)	60, 136
AspLEI	GCGC	1 cut(s)	939
AspS9I	GGNCC	2 cut(s)	452, 677
AsuC2I	CCSGG	1 cut(s)	808
AsuHPI	GGTGA	1 cut(s)	837
AvaII	GGWCC	1 cut(s)	677
BbvI	GCAGC	8 cut(s)	256, 294, 553, 715, 797, 913, 916, 951
BccI	CCATC	4 cut(s)	80, 200, 575, 710
BceAI	ACGGC	1 cut(s)	515
BciT130I	CCWGG	3 cut(s)	819, 849, 934
BclI	TGATCA	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	808
BcoDI	GTCTC	2 cut(s)	493, 579
BcuI	ACTAGT	1 cut(s)	800
BfaI	CTAG	4 cut(s)	234, 761, 801, 961
BfmI	CTRYAG	2 cut(s)	699, 729
BfrI	CTTAAG	1 cut(s)	173
BfuAI	ACCTGC	3 cut(s)	245, 292, 722
BglI	GCCNNNNNGGC	1 cut(s)	669
BisI	GCNGC	9 cut(s)	116, 270, 283, 567, 729, 786, 927, 930, 940
BlsI	GCNGC	9 cut(s)	117, 271, 284, 568, 730, 787, 928, 931, 941
Bme1390I	CCNGG	4 cut(s)	808, 819, 849, 934
Bme18I	GGWCC	1 cut(s)	677
BmgT120I	GGNCC	2 cut(s)	452, 677
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	4 cut(s)	808, 819, 849, 934
BmsI	GCATC	8 cut(s)	89, 329, 356, 374, 640, 773, 797, 823
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
BpmI	CTGGAG	2 cut(s)	366, 902
BpuEI	CTTGAG	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	808
BsaHI	GRCGYC	2 cut(s)	396, 419
BsaJI	CCNNGG	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bse1I	ACTGG	3 cut(s)	43, 664, 871
BseBI	CCWGG	3 cut(s)	819, 849, 934
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	2 cut(s)	347, 814
BseNI	ACTGG	3 cut(s)	43, 664, 871
BseRI	GAGGAG	5 cut(s)	344, 418, 454, 576, 735
BseXI	GCAGC	8 cut(s)	256, 294, 553, 715, 797, 913, 916, 951
Bsh1236I	CGCG	1 cut(s)	742
BshFI	GGCC	3 cut(s)	225, 453, 663
BsiSI	CCGG	1 cut(s)	807
BslFI	GGGAC	1 cut(s)	154
BsmAI	GTCTC	2 cut(s)	493, 579
BsmFI	GGGAC	1 cut(s)	154
BsmI	GAATGC	2 cut(s)	870, 919
BsnI	GGCC	3 cut(s)	225, 453, 663
Bsp143I	GATC	5 cut(s)	94, 190, 340, 360, 608
BspACI	CCGC	3 cut(s)	115, 313, 740
BspANI	GGCC	3 cut(s)	225, 453, 663
BspFNI	CGCG	1 cut(s)	742
BspHI	TCATGA	1 cut(s)	874
BspLI	GGNNCC	1 cut(s)	454
BspMAI	CTGCAG	1 cut(s)	733
BspMI	ACCTGC	3 cut(s)	245, 292, 722
BspPI	GGATC	2 cut(s)	198, 616
BspTI	CTTAAG	1 cut(s)	173
BsrI	ACTGG	3 cut(s)	43, 664, 871
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	5 cut(s)	94, 190, 340, 360, 608
BssNI	GRCGYC	2 cut(s)	396, 419
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	3 cut(s)	819, 849, 934
Bst4CI	ACNGT	1 cut(s)	775
Bst6I	CTCTTC	1 cut(s)	501
BstACI	GRCGYC	2 cut(s)	396, 419
BstAFI	CTTAAG	1 cut(s)	173
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstC8I	GCNNGC	2 cut(s)	120, 162
BstDEI	CTNAG	1 cut(s)	665
BstF5I	GGATG	2 cut(s)	347, 814
BstFNI	CGCG	1 cut(s)	742
BstHHI	GCGC	1 cut(s)	939
BstKTI	GATC	5 cut(s)	97, 193, 343, 363, 611
BstMAI	GTCTC	2 cut(s)	493, 579
BstMBI	GATC	5 cut(s)	94, 190, 340, 360, 608
BstMWI	GCNNNNNNNGC	4 cut(s)	669, 704, 794, 923
BstNI	CCWGG	3 cut(s)	819, 849, 934
BstSCI	CCNGG	4 cut(s)	806, 817, 847, 932
BstSFI	CTRYAG	2 cut(s)	699, 729
BstUI	CGCG	1 cut(s)	742
BstV1I	GCAGC	8 cut(s)	256, 294, 553, 715, 797, 913, 916, 951
BsuRI	GGCC	3 cut(s)	225, 453, 663
BtgZI	GCGATG	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	347, 814
BtsI	GCAGTG	2 cut(s)	228, 679
BtsIMutI	CAGTG	2 cut(s)	228, 679
BveI	ACCTGC	3 cut(s)	245, 292, 722
Cac8I	GCNNGC	2 cut(s)	120, 162
CciI	TCATGA	1 cut(s)	874
CfoI	GCGC	1 cut(s)	939
Cfr13I	GGNCC	2 cut(s)	452, 677
CseI	GACGC	2 cut(s)	404, 408
CsiI	ACCWGGT	1 cut(s)	847
CviAII	CATG	2 cut(s)	497, 875
DdeI	CTNAG	1 cut(s)	665
DpnI	GATC	5 cut(s)	96, 192, 342, 362, 610
DpnII	GATC	5 cut(s)	94, 190, 340, 360, 608
DraIII	CACNNNGTG	1 cut(s)	851
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
EciI	GGCGGA	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	273
Eco147I	AGGCCT	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	677
EcoRII	CCWGG	3 cut(s)	817, 847, 932
EcoT14I	CCWWGG	1 cut(s)	273
EcoT22I	ATGCAT	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	2 cut(s)	500, 878
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	2 cut(s)	496, 874
FbaI	TGATCA	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	736
Fnu4HI	GCNGC	9 cut(s)	116, 270, 283, 567, 729, 786, 927, 930, 940
FokI	GGATG	2 cut(s)	334, 801
Fsp4HI	GCNGC	9 cut(s)	116, 270, 283, 567, 729, 786, 927, 930, 940
FspBI	CTAG	4 cut(s)	234, 761, 801, 961
GlaI	GCGC	1 cut(s)	938
GluI	GCNGC	9 cut(s)	116, 270, 283, 567, 729, 786, 927, 930, 940
GsuI	CTGGAG	2 cut(s)	366, 902
HaeIII	GGCC	3 cut(s)	225, 453, 663
HapII	CCGG	1 cut(s)	807
HgaI	GACGC	2 cut(s)	404, 408
HhaI	GCGC	1 cut(s)	939
Hin1I	GRCGYC	2 cut(s)	396, 419
Hin1II	CATG	2 cut(s)	500, 878
Hin6I	GCGC	1 cut(s)	937
HinP1I	GCGC	1 cut(s)	937
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	3 cut(s)	27, 332, 409
HpaII	CCGG	1 cut(s)	807
HphI	GGTGA	1 cut(s)	837
Hpy166II	GTNNAC	2 cut(s)	423, 737
Hpy188I	TCNGA	5 cut(s)	26, 85, 94, 298, 340
Hpy188III	TCNNGA	2 cut(s)	65, 875
Hpy8I	GTNNAC	2 cut(s)	423, 737
Hpy99I	CGWCG	3 cut(s)	398, 445, 448
HpyAV	CCTTC	3 cut(s)	423, 466, 880
HpyCH4III	ACNGT	1 cut(s)	775
HpyCH4IV	ACGT	1 cut(s)	446
HpyF10VI	GCNNNNNNNGC	4 cut(s)	669, 704, 794, 923
HpyF3I	CTNAG	1 cut(s)	665
HpySE526I	ACGT	1 cut(s)	446
Hsp92I	GRCGYC	2 cut(s)	396, 419
Hsp92II	CATG	2 cut(s)	500, 878
HspAI	GCGC	1 cut(s)	937
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	5 cut(s)	94, 190, 340, 360, 608
LmnI	GCTCC	4 cut(s)	298, 391, 563, 782
Lsp1109I	GCAGC	8 cut(s)	256, 294, 553, 715, 797, 913, 916, 951
LweI	GCATC	8 cut(s)	89, 329, 356, 374, 640, 773, 797, 823
MabI	ACCWGGT	1 cut(s)	847
MaeI	CTAG	4 cut(s)	234, 761, 801, 961
MaeII	ACGT	1 cut(s)	446
MaeIII	GTNAC	1 cut(s)	838
MalI	GATC	5 cut(s)	96, 192, 342, 362, 610
MboI	GATC	5 cut(s)	94, 190, 340, 360, 608
MboII	GAAGA	4 cut(s)	190, 463, 466, 518
MluCI	AATT	7 cut(s)	60, 75, 136, 195, 599, 641, 654
MlyI	GAGTC	2 cut(s)	341, 418
Mph1103I	ATGCAT	1 cut(s)	49
MseI	TTAA	3 cut(s)	104, 174, 590
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	1 cut(s)	807
MspR9I	CCNGG	4 cut(s)	808, 819, 849, 934
Mva1269I	GAATGC	2 cut(s)	870, 919
MvaI	CCWGG	3 cut(s)	819, 849, 934
MvnI	CGCG	1 cut(s)	742
MwoI	GCNNNNNNNGC	4 cut(s)	669, 704, 794, 923
NciI	CCSGG	1 cut(s)	808
NdeII	GATC	5 cut(s)	94, 190, 340, 360, 608
NlaIII	CATG	2 cut(s)	500, 878
NlaIV	GGNNCC	1 cut(s)	454
NsiI	ATGCAT	1 cut(s)	49
PagI	TCATGA	1 cut(s)	874
PaqCI	CACCTGC	1 cut(s)	245
PceI	AGGCCT	1 cut(s)	225
PctI	GAATGC	2 cut(s)	870, 919
PfeI	GAWTC	1 cut(s)	27
PfoI	TCCNGGA	1 cut(s)	806
PkrI	GCNGC	9 cut(s)	117, 271, 284, 568, 730, 787, 928, 931, 941
PleI	GAGTC	2 cut(s)	340, 417
PpsI	GAGTC	2 cut(s)	340, 417
Psp6I	CCWGG	3 cut(s)	817, 847, 932
PspGI	CCWGG	3 cut(s)	817, 847, 932
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	2 cut(s)	452, 677
PsrI	GAACNNNNNNTAC	2 cut(s)	847, 879
PstI	CTGCAG	1 cut(s)	733
SaqAI	TTAA	3 cut(s)	104, 174, 590
SatI	GCNGC	9 cut(s)	116, 270, 283, 567, 729, 786, 927, 930, 940
Sau3AI	GATC	5 cut(s)	94, 190, 340, 360, 608
Sau96I	GGNCC	2 cut(s)	452, 677
SchI	GAGTC	2 cut(s)	341, 418
ScrFI	CCNGG	4 cut(s)	808, 819, 849, 934
SexAI	ACCWGGT	1 cut(s)	847
SfaNI	GCATC	8 cut(s)	89, 329, 356, 374, 640, 773, 797, 823
SfcI	CTRYAG	2 cut(s)	699, 729
SinI	GGWCC	1 cut(s)	677
SmlI	CTYRAG	2 cut(s)	173, 540
SmoI	CTYRAG	2 cut(s)	173, 540
SpeI	ACTAGT	1 cut(s)	800
Sse9I	AATT	7 cut(s)	60, 75, 136, 195, 599, 641, 654
SseBI	AGGCCT	1 cut(s)	225
SsiI	CCGC	3 cut(s)	115, 313, 740
SspI	AATATT	1 cut(s)	906
SspMI	CTAG	4 cut(s)	234, 761, 801, 961
StuI	AGGCCT	1 cut(s)	225
StyD4I	CCNGG	4 cut(s)	806, 817, 847, 932
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	775
TaiI	ACGT	1 cut(s)	449
TaqI	TCGA	3 cut(s)	11, 393, 407
TasI	AATT	7 cut(s)	60, 75, 136, 195, 599, 641, 654
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	1 cut(s)	27
Tru1I	TTAA	3 cut(s)	104, 174, 590
Tru9I	TTAA	3 cut(s)	104, 174, 590
TscAI	CASTG	2 cut(s)	235, 679
TseI	GCWGC	8 cut(s)	269, 282, 566, 728, 785, 926, 929, 939
TspDTI	ATGAA	4 cut(s)	282, 651, 863, 926
TspRI	CASTG	2 cut(s)	235, 679
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	677
XapI	RAATTY	2 cut(s)	60, 136
XmiI	GTMKAC	1 cut(s)	736
XspI	CTAG	4 cut(s)	234, 761, 801, 961
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.