Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000796.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

106147 .. 106494

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggatttgcttgattgcctcgacactacctggtctggtgctgttgtgttcatagatgaacaatcaaagaaggatcttgataggccatatgggagggttaataggaagcagctcaagtccaaaatgctgcagaaatgcatttcaaatggtgtcaagtttcatcaagttaaagtcagtaatgttattcacgaggaggaaaaatcaatcttgatttacaacgatggcgtcacaattcaagcttctgtggttcttgatgcaacaggtttttcaagatgccttgtgcaatatgataagccttacaacccaggttaccaagtggcgtatgggattttggctgaggtagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009509 GO:0009536 GO:0009975 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016853 GO:0016860 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045436 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Lycopene_cycl

Protein Analysis

115

Amino Acids

13.01

Weight (kDa)

6.1

Isoelectric Point (pI)

26.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lycopene_cycl	PF05834	2 - 115	3.8e-30	Lycopene cyclase protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	225
AgsI	TTSAA	3 cut(s)	144, 236, 270
AjnI	CCWGG	2 cut(s)	29, 304
AluBI	AGCT	2 cut(s)	112, 239
AluI	AGCT	2 cut(s)	112, 239
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	109, 127
BauI	CACGAG	1 cut(s)	188
BbvCI	CCTCAGC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	114, 121
BccI	CCATC	1 cut(s)	215
BciT130I	CCWGG	2 cut(s)	31, 306
BfmI	CTRYAG	1 cut(s)	128
BisI	GCNGC	2 cut(s)	110, 128
BlsI	GCNGC	2 cut(s)	111, 129
Bme1390I	CCNGG	2 cut(s)	31, 306
BmrFI	CCNGG	2 cut(s)	31, 306
BmsI	GCATC	2 cut(s)	244, 263
Bpu10I	CCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	304
BseBI	CCWGG	2 cut(s)	31, 306
BseDI	CCNNGG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	327
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	114, 121
BshFI	GGCC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	73
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	328
BspMAI	CTGCAG	1 cut(s)	132
BspPI	GGATC	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	1 cut(s)	73
BssNI	GRCGYC	1 cut(s)	225
BssSI	CACGAG	1 cut(s)	188
Bst2BI	CACGAG	1 cut(s)	188
Bst2UI	CCWGG	2 cut(s)	31, 306
BstACI	GRCGYC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	336
BstEII	GGTNACC	1 cut(s)	308
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstNI	CCWGG	2 cut(s)	31, 306
BstPI	GGTNACC	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	29, 304
BstSFI	CTRYAG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	114, 121
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	214
CsiI	ACCWGGT	1 cut(s)	29
CviJI	RGCY	5 cut(s)	85, 112, 239, 295, 335
CviKI_1	RGCY	5 cut(s)	85, 112, 239, 295, 335
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Eco91I	GGTNACC	1 cut(s)	308
EcoO65I	GGTNACC	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	29, 304
EcoT22I	ATGCAT	1 cut(s)	140
FaiI	YATR	5 cut(s)	53, 88, 90, 288, 324
FauNDI	CATATG	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	110, 128
Fsp4HI	GCNGC	2 cut(s)	110, 128
GluI	GCNGC	2 cut(s)	110, 128
HaeIII	GGCC	1 cut(s)	85
HgaI	GACGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	225
HindIII	AAGCTT	1 cut(s)	237
Hpy188III	TCNNGA	5 cut(s)	77, 188, 208, 251, 270
HpyAV	CCTTC	1 cut(s)	64
HpyCH4V	TGCA	4 cut(s)	130, 138, 257, 283
HpyF3I	CTNAG	1 cut(s)	336
Hsp92I	GRCGYC	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	73
LpnPI	CCDG	6 cut(s)	16, 21, 43, 246, 291, 318
Lsp1109I	GCAGC	2 cut(s)	114, 121
LweI	GCATC	2 cut(s)	244, 263
MabI	ACCWGGT	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	226, 308
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	1 cut(s)	231
MnlI	CCTC	5 cut(s)	29, 87, 184, 187, 331
Mph1103I	ATGCAT	1 cut(s)	140
MseI	TTAA	2 cut(s)	99, 168
MspR9I	CCNGG	2 cut(s)	31, 306
MvaI	CCWGG	2 cut(s)	31, 306
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	226
NsiI	ATGCAT	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	111, 129
Psp6I	CCWGG	2 cut(s)	29, 304
PspEI	GGTNACC	1 cut(s)	308
PspGI	CCWGG	2 cut(s)	29, 304
PstI	CTGCAG	1 cut(s)	132
PsuI	RGATCY	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	99, 168
SatI	GCNGC	2 cut(s)	110, 128
Sau3AI	GATC	1 cut(s)	73
ScrFI	CCNGG	2 cut(s)	31, 306
SetI	ASST	6 cut(s)	32, 114, 241, 265, 310, 342
SexAI	ACCWGGT	1 cut(s)	29
SfaNI	GCATC	2 cut(s)	244, 263
SfcI	CTRYAG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	29, 304
TaqI	TCGA	1 cut(s)	21
TasI	AATT	1 cut(s)	231
Tru1I	TTAA	2 cut(s)	99, 168
Tru9I	TTAA	2 cut(s)	99, 168
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	109, 127
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	40, 72, 149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.