Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000796.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

106539 .. 107824

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atggcagccgccgatttgaatctgcgattgaacatcaactatgagaaaaaaaactctggttcttcttcttcgttgttgtctcagcaagcccagacctccttttacttttctttctgttctcctctctctctccccctcggaagtcccaagttccctttcttcttctttgatgcgctaaaaatcagcgagcttcgatgtggtctcaggaagtcctatagaactggtcgtgttaaggctagtagtagtgctcttctggagcttgtgcctgaaaccaagaaggagaatctcgactttgagcttcccttgtatgaccaatcaaaggatcttgtggtggaccttgcagtcgtgggaggcggcctgcagggcttgcggtggcacagcaagtctccgaggcagggctatctgtttgctcgattgatccctctcccaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009509 GO:0009536 GO:0009975 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016853 GO:0016860 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045436 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Lycopene_cycl

Protein Analysis

144

Amino Acids

16.02

Weight (kDa)

9.48

Isoelectric Point (pI)

60.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AciI	CCGC	3 cut(s)	9, 354, 370
AclWI	GGATC	2 cut(s)	330, 412
AfiI	CCNNNNNNNGG	2 cut(s)	319, 395
AgsI	TTSAA	2 cut(s)	19, 31
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	3 cut(s)	190, 259, 298
AluI	AGCT	3 cut(s)	190, 259, 298
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	3 cut(s)	84, 206, 390
AlwI	GGATC	2 cut(s)	330, 412
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	17
BcoDI	GTCTC	3 cut(s)	84, 206, 390
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	2 cut(s)	214, 359
BglI	GCCNNNNNGGC	1 cut(s)	363
BisI	GCNGC	3 cut(s)	6, 9, 355
BlsI	GCNGC	3 cut(s)	7, 10, 356
Bme18I	GGWCC	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	334
BmsI	GCATC	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	136, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 395
Bse1I	ACTGG	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	136, 389
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	319, 395
BseMII	CTCAG	2 cut(s)	95, 217
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	357
BsiHKAI	GWGCWC	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	319, 395
BsmAI	GTCTC	3 cut(s)	84, 206, 390
BsmFI	GGGAC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	357
Bso31I	GGTCTC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	322, 417
BspACI	CCGC	3 cut(s)	9, 354, 370
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	2 cut(s)	94, 216
BspMAI	CTGCAG	1 cut(s)	363
BspPI	GGATC	2 cut(s)	330, 412
BspQI	GCTCTTC	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	2 cut(s)	136, 389
BssMI	GATC	2 cut(s)	322, 417
Bst6I	CTCTTC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	367
BstC8I	GCNNGC	4 cut(s)	87, 188, 359, 368
BstDEI	CTNAG	2 cut(s)	81, 203
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	2 cut(s)	325, 420
BstMAI	GTCTC	3 cut(s)	84, 206, 390
BstMBI	GATC	2 cut(s)	322, 417
BstMWI	GCNNNNNNNGC	2 cut(s)	363, 367
BstSFI	CTRYAG	2 cut(s)	214, 359
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	357
Cac8I	GCNNGC	4 cut(s)	87, 188, 359, 368
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	334
CviJI	RGCY	9 cut(s)	8, 89, 190, 236, 259, 298, 357, 366, 399
CviKI_1	RGCY	9 cut(s)	8, 89, 190, 236, 259, 298, 357, 366, 399
DdeI	CTNAG	2 cut(s)	81, 203
DpnI	GATC	2 cut(s)	324, 419
DpnII	GATC	2 cut(s)	322, 417
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	334
FaiI	YATR	3 cut(s)	42, 216, 309
FaqI	GGGAC	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	6, 9, 355
Fsp4HI	GCNGC	3 cut(s)	6, 9, 355
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	3 cut(s)	6, 9, 355
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	357
HhaI	GCGC	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	2 cut(s)	19, 283
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	2 cut(s)	140, 390
Hpy188III	TCNNGA	3 cut(s)	205, 254, 287
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	1 cut(s)	271
HpyCH4V	TGCA	2 cut(s)	341, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	363, 367
HpyF3I	CTNAG	2 cut(s)	81, 203
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	322, 417
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	9 cut(s)	42, 104, 190, 207, 239, 279, 347, 371, 380
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	237
MalI	GATC	2 cut(s)	324, 419
MboI	GATC	2 cut(s)	322, 417
MboII	GAAGA	6 cut(s)	54, 57, 60, 151, 154, 242
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	250
MnlI	CCTC	6 cut(s)	106, 132, 146, 344, 384, 432
MseI	TTAA	2 cut(s)	231, 433
MwoI	GCNNNNNNNGC	2 cut(s)	363, 367
NdeII	GATC	2 cut(s)	322, 417
PciSI	GCTCTTC	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	19, 283
PkrI	GCNGC	3 cut(s)	7, 10, 356
PspPI	GGNCC	1 cut(s)	334
PstI	CTGCAG	1 cut(s)	363
PsuI	RGATCY	1 cut(s)	322
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	231, 433
SatI	GCNGC	3 cut(s)	6, 9, 355
Sau3AI	GATC	2 cut(s)	322, 417
Sau96I	GGNCC	1 cut(s)	334
SbfI	CCTGCAGG	1 cut(s)	363
SdaI	CCTGCAGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	5 cut(s)	98, 192, 261, 300, 339
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	2 cut(s)	214, 359
SinI	GGWCC	1 cut(s)	334
Sse8387I	CCTGCAGG	1 cut(s)	363
SsiI	CCGC	3 cut(s)	9, 354, 370
SspMI	CTAG	1 cut(s)	237
TaqI	TCGA	3 cut(s)	193, 288, 412
TauI	GCSGC	2 cut(s)	11, 357
TfiI	GAWTC	2 cut(s)	19, 283
Tru1I	TTAA	2 cut(s)	231, 433
Tru9I	TTAA	2 cut(s)	231, 433
TseI	GCWGC	1 cut(s)	5
VpaK11BI	GGWCC	1 cut(s)	334
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.