Rmu_sc0000817.1_g000001

At1g04910-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000817.1
N/A
Physical Location & Seq
Forward (+)
1 .. 455
455 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 319 bp
aggtgggaacttcccacatttcctaatgggtcatcggagattcatccatggtggacattccaagactattgtgcctgacaaacgcaagcttgttgttctgctgcaggacatgggtatcagttggacagatttcagacttcagatgcaaacaatgctcagtgagagtgaccgcaagggaatgattataccgagagtgaaaaaatttacacgaaaatcttctgtgtacacttaccctttgccagaatgtagatgtctacaaagacacaataacactcggattgtcccatctacactctcgggtttcatgacaaagctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

12.2

Weight (kDa)

10.75

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 254
AciI CCGC 1 cut(s) 170
AcsI RAATTY 1 cut(s) 201
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 1 cut(s) 225
AluBI AGCT 2 cut(s) 89, 314
AluI AGCT 2 cut(s) 89, 314
Ama87I CYCGRG 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 215
AvaI CYCGRG 1 cut(s) 296
BaeI ACNNNNGTAYC 2 cut(s) 98, 131
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 296
BmsI GCATC 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 88
BsiHKCI CYCGRG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 267
BsoBI CYCGRG 1 cut(s) 296
Bsp1407I TGTACA 1 cut(s) 223
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 169
BspHI TCATGA 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 106
BsrGI TGTACA 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 47
BstAPI GCANNNNNTGC 1 cut(s) 152
BstAUI TGTACA 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 87
CciI TCATGA 1 cut(s) 304
Csp6I GTAC 1 cut(s) 224
CviAII CATG 3 cut(s) 48, 110, 305
CviJI RGCY 2 cut(s) 89, 314
CviKI_1 RGCY 2 cut(s) 89, 314
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 3 cut(s) 51, 113, 308
FaiI YATR 5 cut(s) 49, 111, 186, 306, 317
FaqI GGGAC 1 cut(s) 267
FatI CATG 3 cut(s) 47, 109, 304
FblI GTMKAC 1 cut(s) 254
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 102
Hin1II CATG 3 cut(s) 51, 113, 308
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 1 cut(s) 40
Hpy166II GTNNAC 4 cut(s) 54, 224, 226, 255
Hpy188I TCNGA 4 cut(s) 37, 135, 142, 277
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 4 cut(s) 54, 224, 226, 255
HpyCH4V TGCA 2 cut(s) 104, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 3 cut(s) 51, 113, 308
LpnPI CCDG 3 cut(s) 88, 90, 253
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 165
MboII GAAGA 1 cut(s) 208
MluCI AATT 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 102
MroXI GAANNNNTTC 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 152
NcoI CCATGG 1 cut(s) 47
NlaIII CATG 3 cut(s) 51, 113, 308
NmuCI GTSAC 1 cut(s) 165
PagI TCATGA 1 cut(s) 304
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 1 cut(s) 103
PstI CTGCAG 1 cut(s) 106
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SatI GCNGC 1 cut(s) 102
SetI ASST 2 cut(s) 91, 316
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 102
Sse9I AATT 1 cut(s) 201
SsiI CCGC 1 cut(s) 170
StyI CCWWGG 1 cut(s) 47
TasI AATT 1 cut(s) 201
TatI WGTACW 1 cut(s) 223
TfiI GAWTC 1 cut(s) 40
TscAI CASTG 1 cut(s) 164
TseFI GTSAC 1 cut(s) 165
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 165
TspDTI ATGAA 2 cut(s) 32, 293
TspRI CASTG 1 cut(s) 164
XapI RAATTY 1 cut(s) 201
XmiI GTMKAC 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.