Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000825.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

37618 .. 39249

Gene Structure 1632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgggcacaagcgtggaggatgtggtgatagtcggaggagggatagccgggctggggacagcggtggcgctgaagagagctggaatagaagcgttggtgctggagagatcggcagggctgcgaaccactggtgcagccttgtctctattctcaaacgcctgccttcaaatcccagaaacctcccagaaacccggaaccggaaaatcctccaccggaaccggcctagaatcgtccgaaccggccaccagaaaatcttcccaccgaaccggcagaaagaaaagaaaaaaaaaaaaaggggagaagcagaaccgagcccaagcccgcctgcagcccaagcccgccttcaggcccagcgaagcccacgtgcaagccaagccgcaagccgccaagccgcaagccgccgagccgccagaaaactgccacgtcagcaagccacgcagacatccagtcagcagccacgtcagccccctgtgccacgtaagcaggccggtcaaccaaagtcaacgccggtcaaccctccggtcaactaccgccggcaacttttccggcagacttccggcgacttttccggccaacttccggccactttttccggccacttttccggtgacttttccggcgactttttccggtcagctacagtactttcccggcagctacagtacttccgaccgctacagtaactttccggcgacggggagaccaaaagccgaactgtgggggttcgtgctcactccaagcttagagcttgtagagtcctccaaacttagagatgagttacctgaacaagttgagctttgtcccactcgagacaactggcgcaggataccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

277

Amino Acids

30.0

Weight (kDa)

10.52

Isoelectric Point (pI)

63.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	7 - 54	2.1e-09	FAD dependent oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	4 cut(s)	240, 570, 581, 594
AcuI	CTGAAG	2 cut(s)	92, 328
AcvI	CACGTG	1 cut(s)	364
AfaI	GTAC	2 cut(s)	644, 664
AfiI	CCNNNNNNNGG	6 cut(s)	54, 197, 345, 579, 695, 717
AgsI	TTSAA	1 cut(s)	167
AhdI	GACNNNNNGTC	1 cut(s)	446
AjiI	CACGTC	2 cut(s)	424, 460
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	6 cut(s)	80, 637, 657, 741, 748, 796
AluI	AGCT	6 cut(s)	80, 637, 657, 741, 748, 796
Alw21I	GWGCWC	1 cut(s)	732
Alw26I	GTCTC	3 cut(s)	147, 694, 804
Ama87I	CYCGRG	1 cut(s)	807
AoxI	GGCC	7 cut(s)	220, 240, 347, 485, 570, 581, 594
ApeKI	GCWGC	5 cut(s)	118, 134, 328, 453, 654
Asp700I	GAANNNNTTC	1 cut(s)	253
AspLEI	GCGC	2 cut(s)	70, 822
AspS9I	GGNCC	1 cut(s)	348
AsuC2I	CCSGG	3 cut(s)	49, 192, 651
AsuHPI	GGTGA	2 cut(s)	37, 619
AvaI	CYCGRG	1 cut(s)	807
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	316
BbrPI	CACGTG	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	732
BbvI	GCAGC	5 cut(s)	105, 146, 340, 465, 666
BciVI	GTATCC	1 cut(s)	819
BcnI	CCSGG	3 cut(s)	49, 192, 651
BcoDI	GTCTC	3 cut(s)	147, 694, 804
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	4 cut(s)	326, 638, 658, 676
BfoI	RGCGCY	1 cut(s)	71
BfuI	GTATCC	1 cut(s)	819
BmcAI	AGTACT	2 cut(s)	644, 664
Bme1390I	CCNGG	3 cut(s)	49, 192, 651
BmeRI	GACNNNNNGTC	1 cut(s)	446
BmeT110I	CYCGRG	1 cut(s)	807
BmgBI	CACGTC	2 cut(s)	424, 460
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	2 cut(s)	196, 217
BmrFI	CCNGG	3 cut(s)	49, 192, 651
BpmI	CTGGAG	1 cut(s)	122
BpuMI	CCSGG	3 cut(s)	49, 192, 651
BsaAI	YACGTR	2 cut(s)	364, 478
BsaI	GGTCTC	1 cut(s)	694
BsaWI	WCCGGW	5 cut(s)	197, 212, 519, 604, 629
Bsc4I	CCNNNNNNNGG	6 cut(s)	54, 197, 345, 579, 695, 717
Bse118I	RCCGGY	6 cut(s)	218, 238, 266, 487, 507, 533
Bse1I	ACTGG	3 cut(s)	133, 446, 821
BseGI	GGATG	2 cut(s)	25, 442
BseLI	CCNNNNNNNGG	6 cut(s)	54, 197, 345, 579, 695, 717
BseNI	ACTGG	3 cut(s)	133, 446, 821
BseRI	GAGGAG	1 cut(s)	51
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	5 cut(s)	105, 146, 340, 465, 666
BseYI	CCCAGC	2 cut(s)	52, 350
BsgI	GTGCAG	1 cut(s)	153
Bsh1285I	CGRYCG	1 cut(s)	673
BshFI	GGCC	7 cut(s)	222, 242, 349, 487, 572, 583, 596
BsiEI	CGRYCG	1 cut(s)	673
BsiHKAI	GWGCWC	1 cut(s)	732
BsiHKCI	CYCGRG	1 cut(s)	807
BslFI	GGGAC	2 cut(s)	70, 786
BslI	CCNNNNNNNGG	6 cut(s)	54, 197, 345, 579, 695, 717
BsmAI	GTCTC	3 cut(s)	147, 694, 804
BsmFI	GGGAC	2 cut(s)	70, 786
BsnI	GGCC	7 cut(s)	222, 242, 349, 487, 572, 583, 596
Bso31I	GGTCTC	1 cut(s)	694
BsoBI	CYCGRG	1 cut(s)	807
Bsp1286I	GDGCHC	3 cut(s)	8, 316, 732
Bsp143I	GATC	1 cut(s)	107
BspANI	GGCC	7 cut(s)	222, 242, 349, 487, 572, 583, 596
BspLI	GGNNCC	2 cut(s)	196, 217
BspMAI	CTGCAG	1 cut(s)	330
BspTNI	GGTCTC	1 cut(s)	694
BsrFI	RCCGGY	6 cut(s)	218, 238, 266, 487, 507, 533
BsrI	ACTGG	3 cut(s)	133, 446, 821
BssAI	RCCGGY	6 cut(s)	218, 238, 266, 487, 507, 533
BssMI	GATC	1 cut(s)	107
Bst4CI	ACNGT	4 cut(s)	642, 662, 680, 717
Bst6I	CTCTTC	1 cut(s)	68
BstBAI	YACGTR	2 cut(s)	364, 478
BstDEI	CTNAG	2 cut(s)	742, 767
BstF5I	GGATG	2 cut(s)	25, 442
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	70, 822
BstKTI	GATC	1 cut(s)	110
BstMAI	GTCTC	3 cut(s)	147, 694, 804
BstMBI	GATC	1 cut(s)	107
BstMCI	CGRYCG	1 cut(s)	673
BstMWI	GCNNNNNNNGC	7 cut(s)	334, 373, 426, 435, 462, 471, 480
BstSCI	CCNGG	3 cut(s)	47, 190, 649
BstSFI	CTRYAG	4 cut(s)	326, 638, 658, 676
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	5 cut(s)	105, 146, 340, 465, 666
BsuI	GTATCC	1 cut(s)	819
BsuRI	GGCC	7 cut(s)	222, 242, 349, 487, 572, 583, 596
BtrI	CACGTC	2 cut(s)	424, 460
BtsCI	GGATG	2 cut(s)	25, 442
BtsIMutI	CAGTG	1 cut(s)	126
CfoI	GCGC	2 cut(s)	70, 822
Cfr10I	RCCGGY	6 cut(s)	218, 238, 266, 487, 507, 533
Cfr13I	GGNCC	1 cut(s)	348
Csp6I	GTAC	2 cut(s)	643, 663
CviQI	GTAC	2 cut(s)	643, 663
DdeI	CTNAG	2 cut(s)	742, 767
DpnI	GATC	1 cut(s)	109
DpnII	GATC	1 cut(s)	107
DriI	GACNNNNNGTC	1 cut(s)	446
EaeI	YGGCCR	4 cut(s)	240, 570, 581, 594
Eam1104I	CTCTTC	1 cut(s)	68
Eam1105I	GACNNNNNGTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	316
Eco31I	GGTCTC	1 cut(s)	694
Eco57I	CTGAAG	2 cut(s)	92, 328
Eco72I	CACGTG	1 cut(s)	364
Eco88I	CYCGRG	1 cut(s)	807
EcoT38I	GRGCYC	1 cut(s)	316
FaiI	YATR	1 cut(s)	832
FalI	AAGNNNNNCTT	4 cut(s)	326, 358, 780, 812
FaqI	GGGAC	2 cut(s)	70, 786
FauI	CCCGC	2 cut(s)	329, 346
FokI	GGATG	2 cut(s)	32, 429
FriOI	GRGCYC	1 cut(s)	316
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	2 cut(s)	69, 821
GsaI	CCCAGC	2 cut(s)	56, 354
GsuI	CTGGAG	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	7 cut(s)	222, 242, 349, 487, 572, 583, 596
HhaI	GCGC	2 cut(s)	70, 822
Hin6I	GCGC	2 cut(s)	68, 820
HinP1I	GCGC	2 cut(s)	68, 820
HincII	GTYRAC	4 cut(s)	493, 503, 513, 525
HindII	GTYRAC	4 cut(s)	493, 503, 513, 525
HindIII	AAGCTT	1 cut(s)	739
HinfI	GANTC	2 cut(s)	227, 755
HphI	GGTGA	2 cut(s)	37, 619
Hpy166II	GTNNAC	4 cut(s)	493, 503, 513, 525
Hpy188I	TCNGA	3 cut(s)	35, 235, 670
Hpy188III	TCNNGA	1 cut(s)	809
Hpy8I	GTNNAC	4 cut(s)	493, 503, 513, 525
Hpy99I	CGWCG	1 cut(s)	697
HpyAV	CCTTC	2 cut(s)	173, 352
HpyCH4III	ACNGT	4 cut(s)	642, 662, 680, 717
HpyCH4IV	ACGT	4 cut(s)	363, 423, 459, 477
HpyCH4V	TGCA	3 cut(s)	134, 328, 367
HpyF10VI	GCNNNNNNNGC	7 cut(s)	334, 373, 426, 435, 462, 471, 480
HpyF3I	CTNAG	2 cut(s)	742, 767
HpySE526I	ACGT	4 cut(s)	363, 423, 459, 477
HspAI	GCGC	2 cut(s)	68, 820
KroI	GCCGGC	1 cut(s)	533
KroNI	GCCGGC	1 cut(s)	535
Kzo9I	GATC	1 cut(s)	107
Lsp1109I	GCAGC	5 cut(s)	105, 146, 340, 465, 666
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	4 cut(s)	363, 423, 459, 477
MaeIII	GTNAC	3 cut(s)	607, 680, 777
MalI	GATC	1 cut(s)	109
MboI	GATC	1 cut(s)	107
MboII	GAAGA	2 cut(s)	85, 246
MhlI	GDGCHC	3 cut(s)	8, 316, 732
MlyI	GAGTC	1 cut(s)	764
MmeI	TCCRAC	2 cut(s)	13, 693
MnlI	CCTC	7 cut(s)	10, 29, 32, 190, 217, 527, 769
MroNI	GCCGGC	1 cut(s)	533
MroXI	GAANNNNTTC	1 cut(s)	253
MslI	CAYNNNNRTG	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	62
MspR9I	CCNGG	3 cut(s)	49, 192, 651
MwoI	GCNNNNNNNGC	7 cut(s)	334, 373, 426, 435, 462, 471, 480
NaeI	GCCGGC	1 cut(s)	535
NciI	CCSGG	3 cut(s)	49, 192, 651
NdeII	GATC	1 cut(s)	107
NgoMIV	GCCGGC	1 cut(s)	533
NlaIV	GGNNCC	2 cut(s)	196, 217
NmeAIII	GCCGAG	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	607
OliI	CACNNNNGTG	1 cut(s)	11
PaeR7I	CTCGAG	1 cut(s)	807
PdiI	GCCGGC	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	227
PleI	GAGTC	1 cut(s)	763
PmaCI	CACGTG	1 cut(s)	364
PmlI	CACGTG	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	763
Ppu21I	YACGTR	2 cut(s)	364, 478
PspCI	CACGTG	1 cut(s)	364
PspFI	CCCAGC	2 cut(s)	52, 350
PspN4I	GGNNCC	2 cut(s)	196, 217
PspPI	GGNCC	1 cut(s)	348
PstI	CTGCAG	1 cut(s)	330
RsaI	GTAC	2 cut(s)	644, 664
RsaNI	GTAC	2 cut(s)	643, 663
RseI	CAYNNNNRTG	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	107
Sau96I	GGNCC	1 cut(s)	348
ScaI	AGTACT	2 cut(s)	644, 664
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	3 cut(s)	49, 192, 651
SduI	GDGCHC	3 cut(s)	8, 316, 732
SfcI	CTRYAG	4 cut(s)	326, 638, 658, 676
Sfr274I	CTCGAG	1 cut(s)	807
SlaI	CTCGAG	1 cut(s)	807
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	807
SmoI	CTYRAG	1 cut(s)	807
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	3 cut(s)	47, 190, 649
TaaI	ACNGT	4 cut(s)	642, 662, 680, 717
TaiI	ACGT	4 cut(s)	366, 426, 462, 480
TaqI	TCGA	1 cut(s)	808
TatI	WGTACW	2 cut(s)	642, 662
TauI	GCSGC	5 cut(s)	379, 386, 394, 401, 409
TfiI	GAWTC	1 cut(s)	227
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	5 cut(s)	118, 134, 328, 453, 654
Tsp45I	GTSAC	1 cut(s)	607
TspRI	CASTG	1 cut(s)	133
XhoI	CTCGAG	1 cut(s)	807
XmnI	GAANNNNTTC	1 cut(s)	253
XspI	CTAG	1 cut(s)	224
ZrmI	AGTACT	2 cut(s)	644, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.