Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000828.1

Orthogroup ID

OG0025493

Physical Location & Seq

Genomic Coordinates Reverse (-)

72124 .. 72504

Gene Structure 381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atggttcttctctatatgcctttcttttcctttttctttcttcttccctcttccttcttccttcttgcttcttggtccgtagttgaaattctagcgtatcagtccaagatcgatttttgcaggttcatagcttcttgggccggccaggattgctcttgtgaacagcaattcgaatatggtgataaccacagtgagtcagagattgctgggttcttggaggccagcaattggaatgggagtggtaatgagagtgaaattgagattgagggtgatgtggtggaagaaatgggtcaactgagaattgtgcaaaatggtagcagcagtggtgtgagtcatgtgggggagtcaaccgtgggagcttttgcagccattcacacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hyccin

Protein Analysis

126

Amino Acids

13.91

Weight (kDa)

4.11

Isoelectric Point (pI)

55.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025493)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000828.1_g000017
rosa_roxburghii	Rroxscaffold_1G00035030 Rroxscaffold_1G00045070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	111
AccB7I	CCANNNNNTGG	1 cut(s)	228
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	86
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	2 cut(s)	131, 359
AluI	AGCT	2 cut(s)	131, 359
AoxI	GGCC	3 cut(s)	138, 142, 219
ApeKI	GCWGC	2 cut(s)	318, 365
ApoI	RAATTY	1 cut(s)	87
AspS9I	GGNCC	2 cut(s)	75, 138
AsuHPI	GGTGA	2 cut(s)	191, 281
AsuII	TTCGAA	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	330, 377
BciT130I	CCWGG	1 cut(s)	146
BfaI	CTAG	1 cut(s)	92
BfuAI	ACCTGC	1 cut(s)	111
BisI	GCNGC	2 cut(s)	319, 366
BlsI	GCNGC	2 cut(s)	320, 367
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	2 cut(s)	75, 138
BmrFI	CCNGG	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	171
Bsa29I	ATCGAT	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	146
BseCI	ATCGAT	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	330, 377
BseYI	CCCAGC	1 cut(s)	206
BshFI	GGCC	3 cut(s)	140, 144, 221
BshVI	ATCGAT	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	228
BsnI	GGCC	3 cut(s)	140, 144, 221
Bsp119I	TTCGAA	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	108
BspANI	GGCC	3 cut(s)	140, 144, 221
BspCNI	CTCAG	1 cut(s)	288
BspDI	ATCGAT	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	111
BspT104I	TTCGAA	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	2 cut(s)	191, 352
Bst6I	CTCTTC	1 cut(s)	55
BstBI	TTCGAA	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	142, 223
BstDEI	CTNAG	1 cut(s)	296
BstDSI	CCRYGG	1 cut(s)	351
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 150, 365
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	330, 377
Bsu15I	ATCGAT	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	140, 144, 221
BsuTUI	ATCGAT	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	351
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	196, 328
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	142, 223
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	75, 138
ClaI	ATCGAT	1 cut(s)	111
CviAII	CATG	1 cut(s)	335
CviJI	RGCY	6 cut(s)	131, 140, 144, 221, 359, 368
CviKI_1	RGCY	6 cut(s)	131, 140, 144, 221, 359, 368
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	338
FaiI	YATR	5 cut(s)	15, 17, 128, 177, 336
FatI	CATG	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	319, 366
FseI	GGCCGGCC	1 cut(s)	144
Fsp4HI	GCNGC	2 cut(s)	319, 366
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	2 cut(s)	319, 366
GsaI	CCCAGC	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	140, 144, 221
HapII	CCGG	1 cut(s)	141
Hin1II	CATG	1 cut(s)	338
HincII	GTYRAC	2 cut(s)	293, 348
HindII	GTYRAC	2 cut(s)	293, 348
HinfI	GANTC	3 cut(s)	194, 331, 344
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	2 cut(s)	191, 281
Hpy166II	GTNNAC	3 cut(s)	161, 293, 348
Hpy188I	TCNGA	1 cut(s)	199
Hpy8I	GTNNAC	3 cut(s)	161, 293, 348
HpyAV	CCTTC	2 cut(s)	64, 71
HpyCH4III	ACNGT	2 cut(s)	191, 352
HpyCH4V	TGCA	3 cut(s)	120, 307, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 150, 365
HpyF3I	CTNAG	1 cut(s)	296
Hsp92II	CATG	1 cut(s)	338
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	356
LpnPI	CCDG	6 cut(s)	106, 131, 154, 158, 192, 235
Lsp1109I	GCAGC	2 cut(s)	330, 377
MaeI	CTAG	1 cut(s)	92
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	5 cut(s)	32, 35, 42, 49, 293
MfeI	CAATTG	1 cut(s)	226
MluCI	AATT	5 cut(s)	87, 167, 226, 255, 300
MlyI	GAGTC	3 cut(s)	203, 340, 353
MnlI	CCTC	3 cut(s)	58, 211, 259
MroNI	GCCGGC	1 cut(s)	140
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	146
MunI	CAATTG	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	3 cut(s)	137, 150, 365
NaeI	GCCGGC	1 cut(s)	142
NdeII	GATC	1 cut(s)	108
NgoMIV	GCCGGC	1 cut(s)	140
NlaIII	CATG	1 cut(s)	338
NspV	TTCGAA	1 cut(s)	171
PdiI	GCCGGC	1 cut(s)	142
PflMI	CCANNNNNTGG	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	320, 367
PleI	GAGTC	3 cut(s)	202, 339, 352
PpsI	GAGTC	3 cut(s)	202, 339, 352
Psp6I	CCWGG	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	144
PspPI	GGNCC	2 cut(s)	75, 138
RigI	GGCCGGCC	1 cut(s)	144
SatI	GCNGC	2 cut(s)	319, 366
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	2 cut(s)	75, 138
SchI	GAGTC	3 cut(s)	203, 340, 353
ScrFI	CCNGG	1 cut(s)	146
SetI	ASST	3 cut(s)	125, 133, 361
SfuI	TTCGAA	1 cut(s)	171
SinI	GGWCC	1 cut(s)	75
Sse9I	AATT	5 cut(s)	87, 167, 226, 255, 300
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	191, 352
TaqI	TCGA	2 cut(s)	111, 171
TasI	AATT	5 cut(s)	87, 167, 226, 255, 300
TscAI	CASTG	2 cut(s)	196, 328
TseI	GCWGC	2 cut(s)	318, 365
TspDTI	ATGAA	1 cut(s)	115
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	2 cut(s)	196, 328
Van91I	CCANNNNNTGG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	75
XapI	RAATTY	1 cut(s)	87
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.