Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000830.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

181570 .. 184129

Gene Structure 2560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atggcgtcaacgccgccgcatcaatcacagccaccaagccgcaccaaacctaccaatcagtcactcaaatctcagcgccagacccgtcagagcaaccaatggaccacccaccacttctctctcttaaggcctctacctttaccctcgcaaccgtctcgcacggagcccaaaccctccgccgctcccaatccaacctccttttcccctctcttccctccgcccaagttagacctcgtcagccccttctcaagccgccgctcgacccggttcgtgtccaaagcgcagattgcaaaacaggagcacagacgctactcatcttcaatgctctgcagtggtccaatttctctagtggccatgattgttccacacacgctatcctttaacaagaaagaggatatgaggatcggaggtagagcatacgaggatgatttgggtggctttgcagacgaggtcgtgccagactgtcggtggggagcggcggagcccaagaaggctgcccaagaaaagaggtccaaactcaaggcccaaaaggatttccttgacccaagcccacactccatcttcctcacccaatggctgcatgcacaattccgctggtcctgtcgccacgatccaacgttatcccgacccatgctgccaccgcaacgcccacaccgagctacactgctacgcaccggcttcaccgctaagtcgtgccctctgatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016070 GO:0016787 GO:0016788 GO:0023052 GO:0031930 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 Smr

Protein Analysis

235

Amino Acids

26.52

Weight (kDa)

10.57

Isoelectric Point (pI)

71.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	182, 258, 476
AclI	AACGTT	1 cut(s)	617
AclWI	GGATC	2 cut(s)	410, 605
AcoI	YGGCCR	1 cut(s)	351
AcyI	GRCGYC	1 cut(s)	5
AflII	CTTAAG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	321
AjuI	GAANNNNNNNTTGG	2 cut(s)	184, 216
AluBI	AGCT	1 cut(s)	659
AluI	AGCT	1 cut(s)	659
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	410, 605
AoxI	GGCC	3 cut(s)	128, 351, 522
ApeKI	GCWGC	3 cut(s)	494, 577, 634
AspLEI	GCGC	2 cut(s)	78, 283
AspS9I	GGNCC	5 cut(s)	102, 335, 510, 523, 597
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	559, 673
AvaII	GGWCC	4 cut(s)	102, 335, 510, 597
BaeGI	GKGCMC	1 cut(s)	698
BalI	TGGCCA	1 cut(s)	353
BanII	GRGCYC	2 cut(s)	168, 486
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	481, 564, 621
BccI	CCATC	1 cut(s)	566
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	2 cut(s)	347, 706
BfmI	CTRYAG	1 cut(s)	328
BfoI	RGCGCY	1 cut(s)	79
BfrI	CTTAAG	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	265
Bme18I	GGWCC	4 cut(s)	102, 335, 510, 597
BmgT120I	GGNCC	5 cut(s)	102, 335, 510, 523, 597
BmiI	GGNNCC	2 cut(s)	165, 483
BmrFI	CCNGG	1 cut(s)	265
BmsI	GCATC	1 cut(s)	28
BpuEI	CTTGAG	2 cut(s)	232, 503
BpuMI	CCSGG	1 cut(s)	265
BsaHI	GRCGYC	1 cut(s)	5
Bse118I	RCCGGY	1 cut(s)	674
BseGI	GGATG	1 cut(s)	430
BseMII	CTCAG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	3 cut(s)	481, 564, 621
BshFI	GGCC	3 cut(s)	130, 353, 524
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	265, 675
BsmAI	GTCTC	1 cut(s)	159
BsmBI	CGTCTC	1 cut(s)	159
BsnI	GGCC	3 cut(s)	130, 353, 524
Bsp1286I	GDGCHC	4 cut(s)	168, 303, 486, 698
Bsp143I	GATC	3 cut(s)	402, 610, 702
BspANI	GGCC	3 cut(s)	130, 353, 524
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	165, 483
BspMAI	CTGCAG	1 cut(s)	332
BspPI	GGATC	2 cut(s)	410, 605
BspTI	CTTAAG	1 cut(s)	124
BsrBI	CCGCTC	3 cut(s)	182, 258, 476
BsrFI	RCCGGY	1 cut(s)	674
BssAI	RCCGGY	1 cut(s)	674
BssMI	GATC	3 cut(s)	402, 610, 702
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	153, 464
Bst6I	CTCTTC	1 cut(s)	215
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	582
BstDEI	CTNAG	2 cut(s)	72, 687
BstF5I	GGATG	1 cut(s)	430
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	2 cut(s)	78, 283
BstKTI	GATC	3 cut(s)	405, 613, 705
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	3 cut(s)	402, 610, 702
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 640
BstNSI	RCATGY	1 cut(s)	584
BstSCI	CCNGG	1 cut(s)	263
BstSFI	CTRYAG	1 cut(s)	328
BstSLI	GKGCMC	1 cut(s)	698
BstV1I	GCAGC	3 cut(s)	481, 564, 621
BsuRI	GGCC	3 cut(s)	130, 353, 524
BtsCI	GGATG	1 cut(s)	430
BtsI	GCAGTG	2 cut(s)	337, 662
BtsIMutI	CAGTG	2 cut(s)	337, 662
Cac8I	GCNNGC	1 cut(s)	582
CfoI	GCGC	2 cut(s)	78, 283
Cfr10I	RCCGGY	1 cut(s)	674
Cfr13I	GGNCC	5 cut(s)	102, 335, 510, 523, 597
CseI	GACGC	1 cut(s)	315
CviAII	CATG	3 cut(s)	355, 581, 631
DdeI	CTNAG	2 cut(s)	72, 687
DpnI	GATC	3 cut(s)	404, 612, 704
DpnII	GATC	3 cut(s)	402, 610, 702
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
EciI	GGCGGA	3 cut(s)	166, 207, 494
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	2 cut(s)	168, 486
Eco47I	GGWCC	4 cut(s)	102, 335, 510, 597
EcoT38I	GRGCYC	2 cut(s)	168, 486
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	3 cut(s)	358, 584, 634
FaiI	YATR	5 cut(s)	356, 398, 418, 582, 632
FatI	CATG	3 cut(s)	354, 580, 630
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	2 cut(s)	168, 486
FspBI	CTAG	2 cut(s)	347, 706
GlaI	GCGC	2 cut(s)	77, 282
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	3 cut(s)	130, 353, 524
HapII	CCGG	2 cut(s)	265, 675
HgaI	GACGC	1 cut(s)	315
HhaI	GCGC	2 cut(s)	78, 283
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	358, 584, 634
Hin6I	GCGC	2 cut(s)	76, 281
HinP1I	GCGC	2 cut(s)	76, 281
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HpaII	CCGG	2 cut(s)	265, 675
HphI	GGTGA	2 cut(s)	559, 673
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	3 cut(s)	90, 407, 702
Hpy188III	TCNNGA	1 cut(s)	624
Hpy8I	GTNNAC	1 cut(s)	9
HpyAV	CCTTC	2 cut(s)	253, 484
HpyCH4III	ACNGT	2 cut(s)	153, 464
HpyCH4IV	ACGT	1 cut(s)	617
HpyCH4V	TGCA	5 cut(s)	290, 330, 443, 580, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 640
HpyF3I	CTNAG	2 cut(s)	72, 687
HpySE526I	ACGT	1 cut(s)	617
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	358, 584, 634
HspAI	GCGC	2 cut(s)	76, 281
Kzo9I	GATC	3 cut(s)	402, 610, 702
LmnI	GCTCC	5 cut(s)	163, 187, 298, 473, 481
LpnPI	CCDG	7 cut(s)	92, 278, 281, 471, 580, 613, 688
Lsp1109I	GCAGC	3 cut(s)	481, 564, 621
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	2 cut(s)	347, 706
MaeII	ACGT	1 cut(s)	617
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	3 cut(s)	404, 612, 704
MbiI	CCGCTC	3 cut(s)	182, 258, 476
MboI	GATC	3 cut(s)	402, 610, 702
MboII	GAAGA	3 cut(s)	202, 309, 553
MhlI	GDGCHC	4 cut(s)	168, 303, 486, 698
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	2 cut(s)	339, 587
MluNI	TGGCCA	1 cut(s)	353
MmeI	TCCRAC	2 cut(s)	215, 638
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	2 cut(s)	125, 381
Msp20I	TGGCCA	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	594
MspCI	CTTAAG	1 cut(s)	124
MspI	CCGG	2 cut(s)	265, 675
MspR9I	CCNGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	2 cut(s)	287, 640
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	3 cut(s)	402, 610, 702
NlaIII	CATG	3 cut(s)	358, 584, 634
NlaIV	GGNNCC	2 cut(s)	165, 483
NmuCI	GTSAC	1 cut(s)	60
NspI	RCATGY	1 cut(s)	584
PaeI	GCATGC	1 cut(s)	584
PceI	AGGCCT	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	652
PflFI	GACNNNGTC	2 cut(s)	233, 449
Psp1406I	AACGTT	1 cut(s)	617
PspN4I	GGNNCC	2 cut(s)	165, 483
PspPI	GGNCC	5 cut(s)	102, 335, 510, 523, 597
PstI	CTGCAG	1 cut(s)	332
PsyI	GACNNNGTC	2 cut(s)	233, 449
SaqAI	TTAA	2 cut(s)	125, 381
Sau3AI	GATC	3 cut(s)	402, 610, 702
Sau96I	GGNCC	5 cut(s)	102, 335, 510, 523, 597
ScrFI	CCNGG	1 cut(s)	265
SduI	GDGCHC	4 cut(s)	168, 303, 486, 698
SetI	ASST	9 cut(s)	52, 139, 197, 234, 412, 453, 512, 620, 661
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	1 cut(s)	328
SinI	GGWCC	4 cut(s)	102, 335, 510, 597
SmlI	CTYRAG	3 cut(s)	124, 247, 518
SmoI	CTYRAG	3 cut(s)	124, 247, 518
SphI	GCATGC	1 cut(s)	584
Sse9I	AATT	2 cut(s)	339, 587
SseBI	AGGCCT	1 cut(s)	130
SspMI	CTAG	2 cut(s)	347, 706
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	263
TaaI	ACNGT	2 cut(s)	153, 464
TaiI	ACGT	1 cut(s)	620
TaqI	TCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	339, 587
TauI	GCSGC	7 cut(s)	16, 19, 42, 182, 255, 258, 479
Tru1I	TTAA	2 cut(s)	125, 381
Tru9I	TTAA	2 cut(s)	125, 381
TscAI	CASTG	2 cut(s)	337, 669
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	3 cut(s)	494, 577, 634
Tsp45I	GTSAC	1 cut(s)	60
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	337, 669
Tth111I	GACNNNGTC	2 cut(s)	233, 449
Vha464I	CTTAAG	1 cut(s)	124
VpaK11BI	GGWCC	4 cut(s)	102, 335, 510, 597
XceI	RCATGY	1 cut(s)	584
XcmI	CCANNNNNNNNNTGG	1 cut(s)	465
XspI	CTAG	2 cut(s)	347, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.