Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000837.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

85845 .. 87401

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ctggaaaccctaacgattgtgactctcactctccatggatgcgcatcgcgcttcccgaaccatgatcgacccgaaggtcagccaggtcggcttcttcactcccacccctgccgagtgcttatcggttcgaacccaatccggacccacagtcccaacctcctatgttcctctctccgaatctccggccggcaactcactctctcccgtcatgatccccccttgtgtcacctttccgacaccgtcgcgatccacactacagccgtgccggttcaggaatcggcgatgcggttgatggattccggcgagcaagtgccggtggggagttacaacccgtcggagtcgttgttagggtcctctccggtggcctcgtcaccgtcgagcagggtcgaggatgggactgtggagttctctcgagaactcctcggtccagtggtactgacgaagcggctccgcactctgaatgtggagctagatgtgttttggttcttcaaatcagtgttggttgcttatgacaagaagggtggtgatcgaccaacagataggaggaaagatgttcctcctccacgtatgcagtttgatgataagagccgagtggaaaaggcaaaaaggcgtgctatggtcaatcaaacagaagctaaagacagagttgaattgttccggcatctgcctcaatatgaatggggaactcagcttccagatctcgagtcaaagttttttcaacttgatcttcaaggtcaatgtgaatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

249

Amino Acids

27.99

Weight (kDa)

8.27

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	75
Acc16I	TGCGCA	1 cut(s)	43
AccII	CGCG	2 cut(s)	49, 245
AccIII	TCCGGA	1 cut(s)	138
AciI	CCGC	3 cut(s)	286, 445, 451
AclWI	GGATC	2 cut(s)	206, 241
AcoI	YGGCCR	1 cut(s)	184
AfaI	GTAC	1 cut(s)	435
AgsI	TTSAA	4 cut(s)	490, 650, 719, 731
AhdI	GACNNNNNGTC	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	82
AloI	GAACNNNNNNTCC	2 cut(s)	676, 708
AluBI	AGCT	3 cut(s)	469, 635, 691
AluI	AGCT	3 cut(s)	469, 635, 691
AlwI	GGATC	2 cut(s)	206, 241
Ama87I	CYCGRG	2 cut(s)	411, 701
Aor13HI	TCCGGA	1 cut(s)	138
AoxI	GGCC	2 cut(s)	184, 363
AspLEI	GCGC	2 cut(s)	44, 51
AspS9I	GGNCC	3 cut(s)	141, 351, 425
AsuHPI	GGTGA	3 cut(s)	218, 363, 536
AsuII	TTCGAA	1 cut(s)	128
AvaI	CYCGRG	2 cut(s)	411, 701
AvaII	GGWCC	3 cut(s)	141, 351, 425
BccI	CCATC	2 cut(s)	286, 386
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	84
BfaI	CTAG	1 cut(s)	470
BfmI	CTRYAG	1 cut(s)	255
BglI	GCCNNNNNGGC	1 cut(s)	88
BglII	AGATCT	1 cut(s)	697
BisI	GCNGC	1 cut(s)	446
BlsI	GCNGC	1 cut(s)	447
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	3 cut(s)	141, 351, 425
BmeRI	GACNNNNNGTC	1 cut(s)	147
BmeT110I	CYCGRG	2 cut(s)	411, 701
BmgT120I	GGNCC	3 cut(s)	141, 351, 425
BmiI	GGNNCC	3 cut(s)	143, 352, 449
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	4 cut(s)	29, 53, 273, 670
BplI	GAGNNNNNCTC	2 cut(s)	405, 437
Bpu14I	TTCGAA	1 cut(s)	128
BsaAI	YACGTR	1 cut(s)	566
BsaBI	GATNNNNATC	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	34, 421
BsaWI	WCCGGW	2 cut(s)	138, 358
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bse118I	RCCGGY	3 cut(s)	186, 265, 313
Bse1I	ACTGG	1 cut(s)	428
Bse8I	GATNNNNATC	1 cut(s)	43
BseAI	TCCGGA	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	34, 421
BseGI	GGATG	2 cut(s)	44, 397
BseJI	GATNNNNATC	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	701
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	2 cut(s)	410, 549
BseX3I	CGGCCG	1 cut(s)	184
Bsh1236I	CGCG	2 cut(s)	49, 245
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	2 cut(s)	186, 365
BsiEI	CGRYCG	1 cut(s)	187
BsiHKCI	CYCGRG	2 cut(s)	411, 701
BsiSI	CCGG	8 cut(s)	139, 183, 187, 266, 300, 314, 359, 658
BslFI	GGGAC	2 cut(s)	135, 409
BsmFI	GGGAC	2 cut(s)	135, 409
BsnI	GGCC	2 cut(s)	186, 365
BsoBI	CYCGRG	2 cut(s)	411, 701
Bsp119I	TTCGAA	1 cut(s)	128
Bsp13I	TCCGGA	1 cut(s)	138
Bsp143I	GATC	6 cut(s)	64, 211, 246, 526, 697, 724
Bsp19I	CCATGG	1 cut(s)	34
Bsp68I	TCGCGA	1 cut(s)	245
BspACI	CCGC	3 cut(s)	286, 445, 451
BspANI	GGCC	2 cut(s)	186, 365
BspCNI	CTCAG	1 cut(s)	700
BspEI	TCCGGA	1 cut(s)	138
BspFNI	CGCG	2 cut(s)	49, 245
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	143, 352, 449
BspPI	GGATC	2 cut(s)	206, 241
BspT104I	TTCGAA	1 cut(s)	128
BsrFI	RCCGGY	3 cut(s)	186, 265, 313
BsrI	ACTGG	1 cut(s)	428
BssAI	RCCGGY	3 cut(s)	186, 265, 313
BssECI	CCNNGG	2 cut(s)	34, 421
BssMI	GATC	6 cut(s)	64, 211, 246, 526, 697, 724
BssT1I	CCWWGG	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	4 cut(s)	149, 241, 375, 400
BstBAI	YACGTR	1 cut(s)	566
BstBI	TTCGAA	1 cut(s)	128
BstC8I	GCNNGC	3 cut(s)	188, 305, 612
BstDEI	CTNAG	1 cut(s)	687
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	44, 397
BstFNI	CGCG	2 cut(s)	49, 245
BstHHI	GCGC	2 cut(s)	44, 51
BstKTI	GATC	6 cut(s)	67, 214, 249, 529, 700, 727
BstMBI	GATC	6 cut(s)	64, 211, 246, 526, 697, 724
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 88
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	255
BstUI	CGCG	2 cut(s)	49, 245
BstX2I	RGATCY	1 cut(s)	697
BstYI	RGATCY	1 cut(s)	697
BstZI	CGGCCG	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	186, 365
BtgI	CCRYGG	1 cut(s)	34
BtgZI	GCGATG	2 cut(s)	30, 296
BtsCI	GGATG	2 cut(s)	44, 397
BtsIMutI	CAGTG	2 cut(s)	435, 501
BtuMI	TCGCGA	1 cut(s)	245
Cac8I	GCNNGC	3 cut(s)	188, 305, 612
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	2 cut(s)	44, 51
Cfr10I	RCCGGY	3 cut(s)	186, 265, 313
Cfr13I	GGNCC	3 cut(s)	141, 351, 425
Csp6I	GTAC	1 cut(s)	434
CspCI	CAANNNNNGTGG	2 cut(s)	502, 537
CviAII	CATG	3 cut(s)	35, 62, 209
CviQI	GTAC	1 cut(s)	434
DdeI	CTNAG	1 cut(s)	687
DpnI	GATC	6 cut(s)	66, 213, 248, 528, 699, 726
DpnII	GATC	6 cut(s)	64, 211, 246, 526, 697, 724
DrdI	GACNNNNNNGTC	1 cut(s)	75
DriI	GACNNNNNGTC	1 cut(s)	147
DseDI	GACNNNNNNGTC	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	184
EagI	CGGCCG	1 cut(s)	184
Eam1105I	GACNNNNNGTC	1 cut(s)	147
EclXI	CGGCCG	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	34
Eco47I	GGWCC	3 cut(s)	141, 351, 425
Eco52I	CGGCCG	1 cut(s)	184
Eco88I	CYCGRG	2 cut(s)	411, 701
EcoO109I	RGGNCCY	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	3 cut(s)	38, 65, 212
FaiI	YATR	8 cut(s)	36, 63, 163, 210, 510, 569, 617, 675
FaqI	GGGAC	2 cut(s)	135, 409
FatI	CATG	3 cut(s)	34, 61, 208
Fnu4HI	GCNGC	1 cut(s)	446
FokI	GGATG	2 cut(s)	51, 404
Fsp4HI	GCNGC	1 cut(s)	446
FspAI	RTGCGCAY	1 cut(s)	43
FspBI	CTAG	1 cut(s)	470
FspI	TGCGCA	1 cut(s)	43
GlaI	GCGC	2 cut(s)	43, 50
GluI	GCNGC	1 cut(s)	446
HaeIII	GGCC	2 cut(s)	186, 365
HapII	CCGG	8 cut(s)	139, 183, 187, 266, 300, 314, 359, 658
HhaI	GCGC	2 cut(s)	44, 51
Hin1II	CATG	3 cut(s)	38, 65, 212
Hin6I	GCGC	2 cut(s)	42, 49
HinP1I	GCGC	2 cut(s)	42, 49
HinfI	GANTC	6 cut(s)	22, 177, 275, 296, 338, 704
HpaII	CCGG	8 cut(s)	139, 183, 187, 266, 300, 314, 359, 658
HphI	GGTGA	3 cut(s)	218, 363, 536
Hpy188I	TCNGA	4 cut(s)	176, 235, 337, 459
Hpy188III	TCNNGA	9 cut(s)	55, 139, 209, 244, 272, 411, 413, 695, 701
Hpy99I	CGWCG	3 cut(s)	245, 337, 379
HpyAV	CCTTC	2 cut(s)	68, 511
HpyCH4III	ACNGT	4 cut(s)	149, 241, 375, 400
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	1 cut(s)	571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 88
HpyF3I	CTNAG	1 cut(s)	687
HpySE526I	ACGT	1 cut(s)	565
Hsp92II	CATG	3 cut(s)	38, 65, 212
HspAI	GCGC	2 cut(s)	42, 49
Kpn2I	TCCGGA	1 cut(s)	138
KroI	GCCGGC	1 cut(s)	186
KroNI	GCCGGC	1 cut(s)	188
Kzo9I	GATC	6 cut(s)	64, 211, 246, 526, 697, 724
LmnI	GCTCC	2 cut(s)	453, 466
LweI	GCATC	4 cut(s)	29, 53, 273, 670
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	1 cut(s)	565
MaeIII	GTNAC	4 cut(s)	19, 224, 323, 369
MalI	GATC	6 cut(s)	66, 213, 248, 528, 699, 726
MboI	GATC	6 cut(s)	64, 211, 246, 526, 697, 724
MboII	GAAGA	3 cut(s)	86, 478, 719
MflI	RGATCY	1 cut(s)	697
MluCI	AATT	1 cut(s)	650
MlyI	GAGTC	3 cut(s)	16, 347, 713
MmeI	TCCRAC	2 cut(s)	258, 315
MroI	TCCGGA	1 cut(s)	138
MroNI	GCCGGC	1 cut(s)	186
MspI	CCGG	8 cut(s)	139, 183, 187, 266, 300, 314, 359, 658
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MvnI	CGCG	2 cut(s)	49, 245
MwoI	GCNNNNNNNGC	2 cut(s)	48, 88
NaeI	GCCGGC	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	34
NdeII	GATC	6 cut(s)	64, 211, 246, 526, 697, 724
NgoMIV	GCCGGC	1 cut(s)	186
NlaIII	CATG	3 cut(s)	38, 65, 212
NlaIV	GGNNCC	3 cut(s)	143, 352, 449
NmeAIII	GCCGAG	2 cut(s)	137, 614
NmuCI	GTSAC	3 cut(s)	19, 224, 369
NruI	TCGCGA	1 cut(s)	245
NsbI	TGCGCA	1 cut(s)	43
NspV	TTCGAA	1 cut(s)	128
PaeR7I	CTCGAG	2 cut(s)	411, 701
PagI	TCATGA	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 374
PdiI	GCCGGC	1 cut(s)	188
PfeI	GAWTC	3 cut(s)	177, 275, 296
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	447
PleI	GAGTC	3 cut(s)	16, 346, 712
PpsI	GAGTC	3 cut(s)	16, 346, 712
Ppu21I	YACGTR	1 cut(s)	566
PpuMI	RGGWCCY	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	3 cut(s)	143, 352, 449
PspPI	GGNCC	3 cut(s)	141, 351, 425
PspPPI	RGGWCCY	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	697
PsyI	GACNNNGTC	1 cut(s)	239
RruI	TCGCGA	1 cut(s)	245
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
SatI	GCNGC	1 cut(s)	446
Sau3AI	GATC	6 cut(s)	64, 211, 246, 526, 697, 724
Sau96I	GGNCC	3 cut(s)	141, 351, 425
SchI	GAGTC	3 cut(s)	16, 347, 713
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	9 cut(s)	79, 88, 159, 231, 471, 568, 637, 693, 736
SfaNI	GCATC	4 cut(s)	29, 53, 273, 670
SfcI	CTRYAG	1 cut(s)	255
Sfr274I	CTCGAG	2 cut(s)	411, 701
SfuI	TTCGAA	1 cut(s)	128
SinI	GGWCC	3 cut(s)	141, 351, 425
SlaI	CTCGAG	2 cut(s)	411, 701
SmlI	CTYRAG	2 cut(s)	411, 701
SmoI	CTYRAG	2 cut(s)	411, 701
Sse9I	AATT	1 cut(s)	650
SsiI	CCGC	3 cut(s)	286, 445, 451
SspMI	CTAG	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	34
TaaI	ACNGT	4 cut(s)	149, 241, 375, 400
TaiI	ACGT	1 cut(s)	568
TaqI	TCGA	7 cut(s)	67, 128, 377, 387, 412, 529, 702
TaqII	GACCGA	1 cut(s)	413
TasI	AATT	1 cut(s)	650
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	3 cut(s)	177, 275, 296
TscAI	CASTG	2 cut(s)	435, 501
TseFI	GTSAC	3 cut(s)	19, 224, 369
Tsp45I	GTSAC	3 cut(s)	19, 224, 369
TspDTI	ATGAA	1 cut(s)	690
TspRI	CASTG	2 cut(s)	435, 501
Tth111I	GACNNNGTC	1 cut(s)	239
VpaK11BI	GGWCC	3 cut(s)	141, 351, 425
XhoI	CTCGAG	2 cut(s)	411, 701
XspI	CTAG	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.