Rmu_sc0000837.1_g000066

Arogenate dehydrogenase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000837.1
N/A
Physical Location & Seq
Reverse (-)
299613 .. 304525
4913 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1218 bp
atgaactcagtagtcacacctgagataaagcagtggttcaggatttctatccaattcgatctgtccttgtttgcttctccagcattcgtcctcttggtgatcacaattggtgttctctcacaaagtgaagttgatgccaacattggtgtagctggtctttccgcaacttgtggtcacgaaactccacaactttacggttggaattctgaatttatcatgctgaagattgccatcatcggctttggcaacttgggacaatcccttgccaagacctttgctgacctgggccacatgaatccacaggtcattttgctatgcacctccataatctccacagaatccgtcctcagatctttacctctcatgcgccttaagcatgacacattgtttgttgacatgcttcccgtcaaagagttttcaaaagcattgttactcaagttgttgcctagctatttagatgttctttgcaccaacccaatgttcggagttgagagaggcaaacatgagtggaatggcatgttttttgtgtacgaaaaggttcaaattggctctaacagagtggggatttatttctgtgataacttcttaaacatgtttgagaaagaagggtgtagaatggtgtctgaggttcgaaggttcagtgataaccccagtgcaggaatatcgggataccaagcctttggccgggtgattgtaccagtgggtatcggcgatttggccggaaaacctcgaatccaggcaatcattgttactgtagcagtttgttctccgacaaaattctccgttttccaaccacttccgggggttaaattgtcccgtccagatgacatgacttggttggcagtcccgtccagactacattccggttggcagtcccttctgatggtcacttgtcacttctacccaccacctcctattccggttggcaatcccttccgatgcgtcacctggttggcagtcccttccagatggcatgagctagttatcccttccgatgtgtcatctgggtggcagttcctccactacaaaaaaaaaattgcaatagccacgacgcgtcctcgtagcaaaaggctcttttgccatcgcaaaagaccattggcgacggcaatgcttccgacgccgttgctggtgtcgccaatgttatttgccacggcaattccccgtcgcaagactattagcgacggcaaacgtttgccgtcgcaagaattttgcgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00400 ko01100 ko01110 ko01230 map00400 map01100 map01110 map01230
Pfam Domains
Protein Families
F420_oxidored PDH

Protein Analysis

405

Amino Acids

45.2

Weight (kDa)

9.43

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1054
AciI CCGC 1 cut(s) 162
AclI AACGTT 1 cut(s) 1189
AcoI YGGCCR 2 cut(s) 682, 717
AcsI RAATTY 4 cut(s) 202, 209, 776, 1205
AcuI CTGAAG 1 cut(s) 242
AcyI GRCGYC 1 cut(s) 1118
AdeI CACNNNGTG 1 cut(s) 125
AfaI GTAC 2 cut(s) 530, 696
AfiI CCNNNNNNNGG 5 cut(s) 482, 656, 684, 800, 883
AflII CTTAAG 1 cut(s) 371
AflIII ACRYGT 2 cut(s) 591, 1052
AgsI TTSAA 2 cut(s) 420, 542
AjnI CCWGG 3 cut(s) 282, 735, 947
AjuI GAANNNNNNNTTGG 2 cut(s) 464, 496
AluBI AGCT 3 cut(s) 152, 450, 979
AluI AGCT 3 cut(s) 152, 450, 979
AoxI GGCC 3 cut(s) 286, 682, 717
ApoI RAATTY 4 cut(s) 202, 209, 776, 1205
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 286
AsuC2I CCSGG 2 cut(s) 686, 801
AsuHPI GGTGA 3 cut(s) 109, 700, 937
AsuII TTCGAA 1 cut(s) 631
BccI CCATC 4 cut(s) 239, 877, 963, 1089
BceAI ACGGC 5 cut(s) 1105, 1119, 1167, 1180, 1198
BcgI CGANNNNNNTGC 6 cut(s) 645, 679, 1090, 1105, 1124, 1139
BciT130I CCWGG 3 cut(s) 284, 737, 949
BciVI GTATCC 1 cut(s) 662
BclI TGATCA 1 cut(s) 99
BcnI CCSGG 2 cut(s) 686, 801
BfaI CTAG 2 cut(s) 447, 980
BfmI CTRYAG 1 cut(s) 753
BfrI CTTAAG 1 cut(s) 371
BfuI GTATCC 1 cut(s) 662
BglII AGATCT 1 cut(s) 350
Bme1390I CCNGG 5 cut(s) 284, 686, 737, 801, 949
BmgT120I GGNCC 1 cut(s) 286
BmrFI CCNGG 5 cut(s) 284, 686, 737, 801, 949
BmrI ACTGGG 1 cut(s) 645
BmsI GCATC 2 cut(s) 124, 929
BmuI ACTGGG 1 cut(s) 645
BpmI CTGGAG 1 cut(s) 63
Bpu14I TTCGAA 1 cut(s) 631
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 2 cut(s) 686, 801
BsaBI GATNNNNATC 2 cut(s) 47, 230
BsaHI GRCGYC 1 cut(s) 1118
BsaJI CCNNGG 3 cut(s) 283, 800, 1149
BsaWI WCCGGW 2 cut(s) 863, 919
Bsc4I CCNNNNNNNGG 5 cut(s) 482, 656, 684, 800, 883
Bse1I ACTGG 2 cut(s) 651, 698
Bse3DI GCAATG 1 cut(s) 1113
Bse8I GATNNNNATC 2 cut(s) 47, 230
BseBI CCWGG 3 cut(s) 284, 737, 949
BseDI CCNNGG 3 cut(s) 283, 800, 1149
BseJI GATNNNNATC 2 cut(s) 47, 230
BseLI CCNNNNNNNGG 5 cut(s) 482, 656, 684, 800, 883
BseMI GCAATG 1 cut(s) 1113
BseMII CTCAG 4 cut(s) 12, 21, 361, 615
BseNI ACTGG 2 cut(s) 651, 698
BsgI GTGCAG 1 cut(s) 675
Bsh1236I CGCG 1 cut(s) 1054
BshFI GGCC 3 cut(s) 288, 684, 719
BsiSI CCGG 5 cut(s) 685, 720, 800, 864, 920
BslFI GGGAC 5 cut(s) 267, 799, 830, 859, 944
BslI CCNNNNNNNGG 5 cut(s) 482, 656, 684, 800, 883
BsmFI GGGAC 5 cut(s) 267, 799, 830, 859, 944
BsmI GAATGC 1 cut(s) 83
BsnI GGCC 3 cut(s) 288, 684, 719
Bsp119I TTCGAA 1 cut(s) 631
Bsp143I GATC 3 cut(s) 58, 99, 350
BspACI CCGC 1 cut(s) 162
BspANI GGCC 3 cut(s) 288, 684, 719
BspCNI CTCAG 4 cut(s) 13, 20, 360, 616
BspFNI CGCG 1 cut(s) 1054
BspT104I TTCGAA 1 cut(s) 631
BspTI CTTAAG 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 1113
BsrI ACTGG 2 cut(s) 651, 698
BssECI CCNNGG 3 cut(s) 283, 800, 1149
BssMI GATC 3 cut(s) 58, 99, 350
BssNI GRCGYC 1 cut(s) 1118
Bst2UI CCWGG 3 cut(s) 284, 737, 949
Bst4CI ACNGT 2 cut(s) 197, 754
BstACI GRCGYC 1 cut(s) 1118
BstAFI CTTAAG 1 cut(s) 371
BstBI TTCGAA 1 cut(s) 631
BstDEI CTNAG 4 cut(s) 7, 21, 347, 624
BstDSI CCRYGG 1 cut(s) 1149
BstFNI CGCG 1 cut(s) 1054
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 3 cut(s) 61, 102, 353
BstMBI GATC 3 cut(s) 58, 99, 350
BstMWI GCNNNNNNNGC 4 cut(s) 80, 373, 1117, 1132
BstNI CCWGG 3 cut(s) 284, 737, 949
BstNSI RCATGY 3 cut(s) 400, 520, 595
BstSCI CCNGG 5 cut(s) 282, 684, 735, 799, 947
BstSFI CTRYAG 1 cut(s) 753
BstUI CGCG 1 cut(s) 1054
BstX2I RGATCY 1 cut(s) 350
BstXI CCANNNNNNTGG 1 cut(s) 680
BstYI RGATCY 1 cut(s) 350
BsuI GTATCC 1 cut(s) 662
BsuRI GGCC 3 cut(s) 288, 684, 719
BtgI CCRYGG 1 cut(s) 1149
BtgZI GCGATG 1 cut(s) 1067
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 4 cut(s) 38, 646, 658, 705
CfoI GCGC 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 286
CseI GACGC 4 cut(s) 931, 1043, 1060, 1126
CsiI ACCWGGT 1 cut(s) 947
Csp6I GTAC 2 cut(s) 529, 695
CviQI GTAC 2 cut(s) 529, 695
DdeI CTNAG 4 cut(s) 7, 21, 347, 624
DpnI GATC 3 cut(s) 60, 101, 352
DpnII GATC 3 cut(s) 58, 99, 350
DraIII CACNNNGTG 1 cut(s) 125
EaeI YGGCCR 2 cut(s) 682, 717
Eco57I CTGAAG 1 cut(s) 242
EcoRI GAATTC 1 cut(s) 202
EcoRII CCWGG 3 cut(s) 282, 735, 947
FaqI GGGAC 5 cut(s) 267, 799, 830, 859, 944
FbaI TGATCA 1 cut(s) 99
FspBI CTAG 2 cut(s) 447, 980
GlaI GCGC 1 cut(s) 368
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 3 cut(s) 288, 684, 719
HapII CCGG 5 cut(s) 685, 720, 800, 864, 920
HgaI GACGC 4 cut(s) 931, 1043, 1060, 1126
HhaI GCGC 1 cut(s) 369
Hin1I GRCGYC 1 cut(s) 1118
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 3 cut(s) 295, 338, 732
HpaII CCGG 5 cut(s) 685, 720, 800, 864, 920
HphI GGTGA 3 cut(s) 109, 700, 937
Hpy166II GTNNAC 2 cut(s) 394, 529
Hpy188I TCNGA 9 cut(s) 208, 350, 485, 625, 771, 882, 938, 994, 1116
Hpy188III TCNNGA 6 cut(s) 40, 176, 666, 821, 852, 966
Hpy8I GTNNAC 2 cut(s) 394, 529
Hpy99I CGWCG 6 cut(s) 1054, 1105, 1120, 1167, 1184, 1201
HpyAV CCTTC 6 cut(s) 599, 627, 887, 943, 972, 999
HpyCH4III ACNGT 2 cut(s) 197, 754
HpyCH4IV ACGT 1 cut(s) 1189
HpyCH4V TGCA 4 cut(s) 318, 468, 656, 1040
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 373, 1117, 1132
HpyF3I CTNAG 4 cut(s) 7, 21, 347, 624
HpySE526I ACGT 1 cut(s) 1189
Hsp92I GRCGYC 1 cut(s) 1118
HspAI GCGC 1 cut(s) 367
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 3 cut(s) 58, 99, 350
LweI GCATC 2 cut(s) 124, 929
MabI ACCWGGT 1 cut(s) 947
MaeI CTAG 2 cut(s) 447, 980
MaeII ACGT 1 cut(s) 1189
MaeIII GTNAC 7 cut(s) 13, 173, 429, 748, 886, 893, 943
MalI GATC 3 cut(s) 60, 101, 352
MboI GATC 3 cut(s) 58, 99, 350
MboII GAAGA 1 cut(s) 235
MfeI CAATTG 1 cut(s) 105
MflI RGATCY 1 cut(s) 350
MluI ACGCGT 1 cut(s) 1052
MmeI TCCRAC 4 cut(s) 179, 794, 814, 1139
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 3 cut(s) 372, 587, 807
MslI CAYNNNNRTG 1 cut(s) 1006
MspCI CTTAAG 1 cut(s) 371
MspI CCGG 5 cut(s) 685, 720, 800, 864, 920
MspR9I CCNGG 5 cut(s) 284, 686, 737, 801, 949
MunI CAATTG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 83
MvaI CCWGG 3 cut(s) 284, 737, 949
MvnI CGCG 1 cut(s) 1054
MwoI GCNNNNNNNGC 4 cut(s) 80, 373, 1117, 1132
NciI CCSGG 2 cut(s) 686, 801
NdeII GATC 3 cut(s) 58, 99, 350
NmuCI GTSAC 5 cut(s) 13, 173, 886, 893, 943
NspI RCATGY 3 cut(s) 400, 520, 595
NspV TTCGAA 1 cut(s) 631
PciI ACATGT 1 cut(s) 591
PctI GAATGC 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 3 cut(s) 295, 338, 732
PscI ACATGT 1 cut(s) 591
Psp1406I AACGTT 1 cut(s) 1189
Psp6I CCWGG 3 cut(s) 282, 735, 947
PspGI CCWGG 3 cut(s) 282, 735, 947
PspPI GGNCC 1 cut(s) 286
PsuI RGATCY 1 cut(s) 350
RsaI GTAC 2 cut(s) 530, 696
RsaNI GTAC 2 cut(s) 529, 695
RseI CAYNNNNRTG 1 cut(s) 1006
SaqAI TTAA 3 cut(s) 372, 587, 807
Sau3AI GATC 3 cut(s) 58, 99, 350
Sau96I GGNCC 1 cut(s) 286
ScrFI CCNGG 5 cut(s) 284, 686, 737, 801, 949
SexAI ACCWGGT 1 cut(s) 947
SfaNI GCATC 2 cut(s) 124, 929
SfcI CTRYAG 1 cut(s) 753
SfuI TTCGAA 1 cut(s) 631
SmiMI CAYNNNNRTG 1 cut(s) 1006
SmlI CTYRAG 2 cut(s) 371, 434
SmoI CTYRAG 2 cut(s) 371, 434
SsiI CCGC 1 cut(s) 162
SspMI CTAG 2 cut(s) 447, 980
StyD4I CCNGG 5 cut(s) 282, 684, 735, 799, 947
TaaI ACNGT 2 cut(s) 197, 754
TaiI ACGT 1 cut(s) 1192
TaqI TCGA 3 cut(s) 57, 631, 730
TfiI GAWTC 3 cut(s) 295, 338, 732
Tru1I TTAA 3 cut(s) 372, 587, 807
Tru9I TTAA 3 cut(s) 372, 587, 807
TscAI CASTG 4 cut(s) 38, 646, 658, 705
TseFI GTSAC 5 cut(s) 13, 173, 886, 893, 943
Tsp45I GTSAC 5 cut(s) 13, 173, 886, 893, 943
TspDTI ATGAA 2 cut(s) 17, 308
TspGWI ACGGA 2 cut(s) 331, 772
TspRI CASTG 4 cut(s) 38, 646, 658, 705
Vha464I CTTAAG 1 cut(s) 371
XapI RAATTY 4 cut(s) 202, 209, 776, 1205
XceI RCATGY 3 cut(s) 400, 520, 595
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 2 cut(s) 447, 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.