Rmu_sc0000854.1_g000062

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000854.1
N/A
Physical Location & Seq
Forward (+)
287896 .. 288971
1076 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 672 bp
atggacagcaggttgaagacactttcgagtggcgaagggacaccggcgtcggtgagtgggaggactaagtctgtggtgttaatggaggatgatgagcctggtgtgctcatcacttttgtttctctgcttcaaggaggaaatgatctgaaacgcattcaattcagcgctggcaacttattccacccgggcttccacgcgcacgacaccaccacccatgccgtctccgtcaacctgtacccatggctcaccacaaatcctagtgactcaatccgagacagaacaaccacgggcagcggatttccagcggtcatgatgtttcggtatggttcggattgggattctagcgagacaactcatcataccgacccgatcagcttcagcttagatcagacgggatcggtttcaggatctcggtttggaattctcaggcccaagtcccatgttgaaaacaaggaagagatcaacgttaacattggcactgtctgtgggaaactcttgagcaaaaggtcatcccactataaattcaccatgactaacaatagcggggaaatcgccgatgagaaagcggaccaatcagtcaacccccaactcaccaaccccaaggttgccgtcaaccatgcattcttcaatactccggtcaaccccggcgtggaaccccaagttaccttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

223

Amino Acids

24.28

Weight (kDa)

6.12

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRX PF08381 28 - 55 7.4e-07 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 46, 575
AccII CGCG 1 cut(s) 197
AciI CCGC 4 cut(s) 294, 305, 543, 566
AclI AACGTT 1 cut(s) 465
AclWI GGATC 2 cut(s) 403, 415
AcsI RAATTY 2 cut(s) 420, 521
AcuI CTGAAG 1 cut(s) 361
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 1 cut(s) 236
AfeI AGCGCT 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 649
AgsI TTSAA 5 cut(s) 16, 131, 158, 446, 628
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 2 cut(s) 375, 381
AluI AGCT 2 cut(s) 375, 381
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 3 cut(s) 226, 267, 341
AlwI GGATC 2 cut(s) 403, 415
Ama87I CYCGRG 1 cut(s) 184
Aor51HI AGCGCT 1 cut(s) 166
AoxI GGCC 1 cut(s) 428
ApeKI GCWGC 1 cut(s) 291
ApoI RAATTY 2 cut(s) 420, 521
AspLEI GCGC 2 cut(s) 167, 199
AspS9I GGNCC 2 cut(s) 429, 568
AsuC2I CCSGG 3 cut(s) 185, 186, 645
AsuHPI GGTGA 4 cut(s) 64, 238, 517, 583
AvaI CYCGRG 1 cut(s) 184
AvaII GGWCC 1 cut(s) 568
BbsI GAAGAC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 303
BceAI ACGGC 2 cut(s) 203, 593
BciT130I CCWGG 1 cut(s) 99
BcnI CCSGG 3 cut(s) 185, 186, 645
BcoDI GTCTC 3 cut(s) 226, 267, 341
BfaI CTAG 2 cut(s) 258, 342
BfoI RGCGCY 1 cut(s) 168
BisI GCNGC 1 cut(s) 292
BlsI GCNGC 1 cut(s) 293
Bme1390I CCNGG 4 cut(s) 99, 185, 186, 645
Bme18I GGWCC 1 cut(s) 568
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 429, 568
BmiI GGNNCC 1 cut(s) 654
BmrFI CCNGG 4 cut(s) 99, 185, 186, 645
BpiI GAAGAC 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 517
BpuMI CCSGG 3 cut(s) 185, 186, 645
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 5 cut(s) 184, 239, 285, 600, 643
BsaWI WCCGGW 1 cut(s) 634
Bsc4I CCNNNNNNNGG 1 cut(s) 649
Bse118I RCCGGY 1 cut(s) 43
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 5 cut(s) 184, 239, 285, 600, 643
BseGI GGATG 2 cut(s) 94, 509
BseLI CCNNNNNNNGG 1 cut(s) 649
BseMII CTCAG 1 cut(s) 439
BseXI GCAGC 1 cut(s) 303
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 1 cut(s) 430
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 184
BsiSI CCGG 4 cut(s) 44, 185, 635, 645
BslFI GGGAC 2 cut(s) 52, 421
BslI CCNNNNNNNGG 1 cut(s) 649
BsmAI GTCTC 3 cut(s) 226, 267, 341
BsmBI CGTCTC 1 cut(s) 226
BsmFI GGGAC 2 cut(s) 52, 421
BsmI GAATGC 2 cut(s) 153, 620
BsnI GGCC 1 cut(s) 430
BsoBI CYCGRG 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 6 cut(s) 142, 369, 385, 395, 407, 459
Bsp19I CCATGG 1 cut(s) 239
BspACI CCGC 4 cut(s) 294, 305, 543, 566
BspANI GGCC 1 cut(s) 430
BspCNI CTCAG 1 cut(s) 438
BspFNI CGCG 1 cut(s) 197
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 654
BspPI GGATC 2 cut(s) 403, 415
BsrFI RCCGGY 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 5 cut(s) 184, 239, 285, 600, 643
BssMI GATC 6 cut(s) 142, 369, 385, 395, 407, 459
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 2 cut(s) 239, 600
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 481
Bst6I CTCTTC 1 cut(s) 450
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 3 cut(s) 66, 382, 425
BstDSI CCRYGG 2 cut(s) 239, 285
BstF5I GGATG 2 cut(s) 94, 509
BstFNI CGCG 1 cut(s) 197
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 2 cut(s) 167, 199
BstKTI GATC 6 cut(s) 145, 372, 388, 398, 410, 462
BstMAI GTCTC 3 cut(s) 226, 267, 341
BstMBI GATC 6 cut(s) 142, 369, 385, 395, 407, 459
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 4 cut(s) 97, 183, 184, 643
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 303
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 407
BstYI RGATCY 1 cut(s) 407
BsuRI GGCC 1 cut(s) 430
BtgI CCRYGG 2 cut(s) 239, 285
BtsCI GGATG 2 cut(s) 94, 509
BtsIMutI CAGTG 1 cut(s) 477
Cac8I GCNNGC 1 cut(s) 169
CciI TCATGA 1 cut(s) 309
CfoI GCGC 2 cut(s) 167, 199
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 429, 568
Cfr9I CCCGGG 1 cut(s) 184
CseI GACGC 1 cut(s) 36
Csp6I GTAC 1 cut(s) 235
CviAII CATG 6 cut(s) 215, 240, 310, 440, 529, 617
CviJI RGCY 6 cut(s) 97, 189, 244, 375, 381, 430
CviKI_1 RGCY 6 cut(s) 97, 189, 244, 375, 381, 430
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 3 cut(s) 66, 382, 425
DpnI GATC 6 cut(s) 144, 371, 387, 397, 409, 461
DpnII GATC 6 cut(s) 142, 369, 385, 395, 407, 459
DrdI GACNNNNNNGTC 2 cut(s) 46, 575
DseDI GACNNNNNNGTC 2 cut(s) 46, 575
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
Eco130I CCWWGG 2 cut(s) 239, 600
Eco47I GGWCC 1 cut(s) 568
Eco47III AGCGCT 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 361
Eco88I CYCGRG 1 cut(s) 184
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 1 cut(s) 97
EcoT14I CCWWGG 2 cut(s) 239, 600
EcoT22I ATGCAT 1 cut(s) 622
ErhI CCWWGG 2 cut(s) 239, 600
Esp3I CGTCTC 1 cut(s) 226
FaeI CATG 6 cut(s) 218, 243, 313, 443, 532, 620
FaiI YATR 9 cut(s) 216, 241, 311, 324, 360, 441, 519, 530, 618
FaqI GGGAC 2 cut(s) 52, 421
FatI CATG 6 cut(s) 214, 239, 309, 439, 528, 616
FauI CCCGC 1 cut(s) 536
Fnu4HI GCNGC 1 cut(s) 292
FokI GGATG 2 cut(s) 101, 496
Fsp4HI GCNGC 1 cut(s) 292
FspBI CTAG 2 cut(s) 258, 342
GlaI GCGC 2 cut(s) 166, 198
GluI GCNGC 1 cut(s) 292
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 1 cut(s) 430
HapII CCGG 4 cut(s) 44, 185, 635, 645
HgaI GACGC 1 cut(s) 36
HhaI GCGC 2 cut(s) 167, 199
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 6 cut(s) 218, 243, 313, 443, 532, 620
Hin6I GCGC 2 cut(s) 165, 197
HinP1I GCGC 2 cut(s) 165, 197
HincII GTYRAC 5 cut(s) 229, 469, 580, 613, 640
HindII GTYRAC 5 cut(s) 229, 469, 580, 613, 640
HinfI GANTC 2 cut(s) 263, 338
HpaI GTTAAC 1 cut(s) 469
HpaII CCGG 4 cut(s) 44, 185, 635, 645
HphI GGTGA 4 cut(s) 64, 238, 517, 583
Hpy166II GTNNAC 5 cut(s) 229, 469, 580, 613, 640
Hpy188I TCNGA 4 cut(s) 147, 272, 331, 390
Hpy188III TCNNGA 3 cut(s) 310, 405, 496
Hpy8I GTNNAC 5 cut(s) 229, 469, 580, 613, 640
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 481
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 1 cut(s) 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 3 cut(s) 66, 382, 425
HpySE526I ACGT 1 cut(s) 465
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 6 cut(s) 218, 243, 313, 443, 532, 620
HspAI GCGC 2 cut(s) 165, 197
KspAI GTTAAC 1 cut(s) 469
Kzo9I GATC 6 cut(s) 142, 369, 385, 395, 407, 459
Lsp1109I GCAGC 1 cut(s) 303
MaeI CTAG 2 cut(s) 258, 342
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 2 cut(s) 260, 661
MalI GATC 6 cut(s) 144, 371, 387, 397, 409, 461
MboI GATC 6 cut(s) 142, 369, 385, 395, 407, 459
MboII GAAGA 3 cut(s) 28, 467, 616
MflI RGATCY 1 cut(s) 407
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 3 cut(s) 158, 420, 521
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 3 cut(s) 54, 79, 128
Mph1103I ATGCAT 1 cut(s) 622
MseI TTAA 2 cut(s) 80, 468
MspA1I CMGCKG 2 cut(s) 294, 305
MspI CCGG 4 cut(s) 44, 185, 635, 645
MspR9I CCNGG 4 cut(s) 99, 185, 186, 645
Mva1269I GAATGC 2 cut(s) 153, 620
MvaI CCWGG 1 cut(s) 99
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 103
NciI CCSGG 3 cut(s) 185, 186, 645
NcoI CCATGG 1 cut(s) 239
NdeII GATC 6 cut(s) 142, 369, 385, 395, 407, 459
NlaIII CATG 6 cut(s) 218, 243, 313, 443, 532, 620
NlaIV GGNNCC 1 cut(s) 654
NmuCI GTSAC 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 622
PagI TCATGA 1 cut(s) 309
PctI GAATGC 2 cut(s) 153, 620
PfeI GAWTC 1 cut(s) 338
PflFI GACNNNGTC 1 cut(s) 67
PkrI GCNGC 1 cut(s) 293
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
Psp1406I AACGTT 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 654
PspPI GGNCC 2 cut(s) 429, 568
PsuI RGATCY 1 cut(s) 407
PsyI GACNNNGTC 1 cut(s) 67
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SaqAI TTAA 2 cut(s) 80, 468
SatI GCNGC 1 cut(s) 292
Sau3AI GATC 6 cut(s) 142, 369, 385, 395, 407, 459
Sau96I GGNCC 2 cut(s) 429, 568
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 4 cut(s) 99, 185, 186, 645
SduI GDGCHC 1 cut(s) 108
SetI ASST 8 cut(s) 14, 234, 377, 383, 468, 509, 606, 668
SgrAI CRCCGGYG 1 cut(s) 43
SinI GGWCC 1 cut(s) 568
SmaI CCCGGG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 496
SmoI CTYRAG 1 cut(s) 496
Sse9I AATT 3 cut(s) 158, 420, 521
SsiI CCGC 4 cut(s) 294, 305, 543, 566
SspMI CTAG 2 cut(s) 258, 342
StyD4I CCNGG 4 cut(s) 97, 183, 184, 643
StyI CCWWGG 2 cut(s) 239, 600
TaaI ACNGT 1 cut(s) 481
TaiI ACGT 1 cut(s) 468
TaqI TCGA 1 cut(s) 26
TasI AATT 3 cut(s) 158, 420, 521
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 2 cut(s) 80, 468
Tru9I TTAA 2 cut(s) 80, 468
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 1 cut(s) 291
Tsp45I GTSAC 1 cut(s) 260
TspGWI ACGGA 1 cut(s) 214
TspMI CCCGGG 1 cut(s) 184
TspRI CASTG 1 cut(s) 484
Tth111I GACNNNGTC 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 568
XapI RAATTY 2 cut(s) 420, 521
XmaI CCCGGG 1 cut(s) 184
XspI CTAG 2 cut(s) 258, 342
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.