Rmu_sc0000855.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000855.1
N/A
Physical Location & Seq
Reverse (-)
3501 .. 5013
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 390 bp
atggatgattcgctccagtacgagtatatgaacaaagaagaccccaaaaggctgcgggtctcactcgaagaaagatttggcaacgtccgtgactccttgcttcttgacctagaagtgagatggcatagcctccgcttctgtgattacaagtcagttcttgactataactcggaagcacttcgcattaaatccttaatggaattctgtggtaaacagatcacagatgcgatgttgattgagaagactctcactaccttccccgtctctacattgatggttgctaagaaccgtagaatcagtgttaatacaagacggatcacaagggcaccgcctccgtccactggcgtagtccctatccaagatgccatggatggcgttccatcatggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

129

Amino Acids

14.96

Weight (kDa)

7.76

Isoelectric Point (pI)

66.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 325
AciI CCGC 3 cut(s) 55, 133, 329
AclWI GGATC 1 cut(s) 323
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 341
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
Alw26I GTCTC 2 cut(s) 64, 268
AlwI GGATC 1 cut(s) 323
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 177
BaeGI GKGCMC 1 cut(s) 328
BanI GGYRCC 1 cut(s) 325
BbsI GAAGAC 2 cut(s) 45, 248
BbvI GCAGC 1 cut(s) 39
BccI CCATC 4 cut(s) 114, 268, 365, 388
BcoDI GTCTC 2 cut(s) 64, 268
BfaI CTAG 1 cut(s) 110
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 327
BmsI GCATC 2 cut(s) 214, 352
BpiI GAAGAC 2 cut(s) 45, 248
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 366
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse1I ACTGG 2 cut(s) 16, 346
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 2 cut(s) 10, 376
BseLI CCNNNNNNNGG 1 cut(s) 341
BseNI ACTGG 2 cut(s) 16, 346
BseSI GKGCMC 1 cut(s) 328
BseXI GCAGC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 325
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 2 cut(s) 64, 268
BsmBI CGTCTC 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 335
Bso31I GGTCTC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 328
Bsp143I GATC 2 cut(s) 216, 315
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 3 cut(s) 55, 133, 329
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 1 cut(s) 323
BspT107I GGYRCC 1 cut(s) 325
BspTNI GGTCTC 1 cut(s) 64
BsrI ACTGG 2 cut(s) 16, 346
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 2 cut(s) 216, 315
BssT1I CCWWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 290
BstDEI CTNAG 1 cut(s) 282
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 2 cut(s) 10, 376
BstKTI GATC 2 cut(s) 219, 318
BstMAI GTCTC 2 cut(s) 64, 268
BstMBI GATC 2 cut(s) 216, 315
BstSLI GKGCMC 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 39
BstV2I GAAGAC 2 cut(s) 45, 248
BtgI CCRYGG 1 cut(s) 366
BtgZI GCGATG 1 cut(s) 242
BtsCI GGATG 2 cut(s) 10, 376
BtsIMutI CAGTG 2 cut(s) 304, 339
Csp6I GTAC 1 cut(s) 19
CviAII CATG 2 cut(s) 367, 384
CviJI RGCY 2 cut(s) 52, 129
CviKI_1 RGCY 2 cut(s) 52, 129
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 282
DpnI GATC 2 cut(s) 218, 317
DpnII GATC 2 cut(s) 216, 315
Eco130I CCWWGG 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 268
FaeI CATG 2 cut(s) 370, 387
FaiI YATR 6 cut(s) 27, 29, 126, 165, 368, 385
FaqI GGGAC 1 cut(s) 335
FatI CATG 2 cut(s) 366, 383
FauI CCCGC 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 2 cut(s) 17, 383
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 1 cut(s) 110
GluI GCNGC 1 cut(s) 53
Hin1II CATG 2 cut(s) 370, 387
HinfI GANTC 4 cut(s) 8, 92, 244, 294
Hpy166II GTNNAC 2 cut(s) 212, 339
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 104, 158
Hpy8I GTNNAC 2 cut(s) 212, 339
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 370, 387
Kzo9I GATC 2 cut(s) 216, 315
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 2 cut(s) 29, 327
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 2 cut(s) 214, 352
MaeI CTAG 1 cut(s) 110
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 89
MalI GATC 2 cut(s) 218, 317
MboI GATC 2 cut(s) 216, 315
MboII GAAGA 3 cut(s) 50, 80, 253
MhlI GDGCHC 1 cut(s) 328
MluCI AATT 1 cut(s) 200
MlyI GAGTC 2 cut(s) 86, 238
MnlI CCTC 2 cut(s) 140, 342
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 3 cut(s) 186, 194, 303
MslI CAYNNNNRTG 1 cut(s) 385
NcoI CCATGG 1 cut(s) 366
NdeII GATC 2 cut(s) 216, 315
NlaIII CATG 2 cut(s) 370, 387
NlaIV GGNNCC 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 89
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 8, 294
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 2 cut(s) 86, 238
PpsI GAGTC 2 cut(s) 86, 238
PspN4I GGNNCC 1 cut(s) 327
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 385
SaqAI TTAA 3 cut(s) 186, 194, 303
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 2 cut(s) 216, 315
SchI GAGTC 2 cut(s) 86, 238
SduI GDGCHC 1 cut(s) 328
SetI ASST 3 cut(s) 87, 111, 257
SfaNI GCATC 2 cut(s) 214, 352
SmiMI CAYNNNNRTG 1 cut(s) 385
Sse9I AATT 1 cut(s) 200
SsiI CCGC 3 cut(s) 55, 133, 329
SspMI CTAG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 66
TasI AATT 1 cut(s) 200
TfiI GAWTC 2 cut(s) 8, 294
Tru1I TTAA 3 cut(s) 186, 194, 303
Tru9I TTAA 3 cut(s) 186, 194, 303
TscAI CASTG 2 cut(s) 304, 346
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 44
TspGWI ACGGA 3 cut(s) 77, 324, 328
TspRI CASTG 2 cut(s) 304, 346
XapI RAATTY 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.