Rmu_sc0000857.1_g000029

ribosomal protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000857.1
N/A
Physical Location & Seq
Forward (+)
142838 .. 143992
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
atgatcaggccgtcatccaaagtgatcatcaagtttcttattgtcatgcaaaagcatggatacattggagagttcgagtatgttgacgaccacagctctggcaaaattgtggtcgaactgaatggaaggcttaaaaagtgtggggtcattagtcctcgttttgatgttggtgttaaggagattgaaggttggactgccaggttgcttccttcaagacagattgtcaggcagtggtaccaacctgtagaggcttcaaggttgagaagtaaaatctggaagttactcaaggaagaatttcaaaatggatccaagtctaactactctaaagaatcttctcctttgagtgatgcttctgatgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.8

Weight (kDa)

9.41

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 234
AccB1I GGYRCC 1 cut(s) 234
AclWI GGATC 2 cut(s) 300, 313
AcsI RAATTY 1 cut(s) 293
AfaI GTAC 1 cut(s) 236
AgsI TTSAA 4 cut(s) 185, 213, 255, 299
AhdI GACNNNNNGTC 1 cut(s) 221
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
AlwI GGATC 2 cut(s) 300, 313
AoxI GGCC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 293
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
Asp700I GAANNNNTTC 1 cut(s) 294
Asp718I GGTACC 1 cut(s) 234
BamHI GGATCC 1 cut(s) 305
BanI GGYRCC 1 cut(s) 234
BciT130I CCWGG 1 cut(s) 199
BciVI GTATCC 1 cut(s) 53
BclI TGATCA 2 cut(s) 3, 24
BfmI CTRYAG 1 cut(s) 243
BfuI GTATCC 1 cut(s) 53
Bme1390I CCNGG 1 cut(s) 199
BmeRI GACNNNNNGTC 1 cut(s) 221
BmiI GGNNCC 2 cut(s) 236, 307
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 1 cut(s) 337
BpuEI CTTGAG 1 cut(s) 269
BseBI CCWGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 14
BshFI GGCC 1 cut(s) 10
BshNI GGYRCC 1 cut(s) 234
BsnI GGCC 1 cut(s) 10
Bsp143I GATC 3 cut(s) 3, 24, 305
BspANI GGCC 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 236, 307
BspPI GGATC 2 cut(s) 300, 313
BspT107I GGYRCC 1 cut(s) 234
BssMI GATC 3 cut(s) 3, 24, 305
Bst2UI CCWGG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 3 cut(s) 6, 27, 308
BstMBI GATC 3 cut(s) 3, 24, 305
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 305
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 1 cut(s) 305
BsuI GTATCC 1 cut(s) 53
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 14
BtsI GCAGTG 1 cut(s) 236
BtsIMutI CAGTG 1 cut(s) 236
Csp6I GTAC 1 cut(s) 235
CviAII CATG 2 cut(s) 46, 56
CviJI RGCY 4 cut(s) 10, 96, 130, 251
CviKI_1 RGCY 4 cut(s) 10, 96, 130, 251
CviQI GTAC 1 cut(s) 235
DpnI GATC 3 cut(s) 5, 26, 307
DpnII GATC 3 cut(s) 3, 24, 305
DriI GACNNNNNGTC 1 cut(s) 221
Eam1105I GACNNNNNGTC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 197
FaeI CATG 2 cut(s) 49, 59
FaiI YATR 3 cut(s) 47, 57, 81
FatI CATG 2 cut(s) 45, 55
FbaI TGATCA 2 cut(s) 3, 24
HaeIII GGCC 1 cut(s) 10
Hin1II CATG 2 cut(s) 49, 59
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 2 cut(s) 213, 274
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 3 cut(s) 120, 179, 219
HpyCH4V TGCA 1 cut(s) 49
Hsp92II CATG 2 cut(s) 49, 59
KpnI GGTACC 1 cut(s) 238
Ksp22I TGATCA 2 cut(s) 3, 24
Kzo9I GATC 3 cut(s) 3, 24, 305
LpnPI CCDG 6 cut(s) 84, 184, 211, 211, 255, 259
LweI GCATC 1 cut(s) 337
MaeIII GTNAC 1 cut(s) 279
MalI GATC 3 cut(s) 5, 26, 307
MboI GATC 3 cut(s) 3, 24, 305
MboII GAAGA 2 cut(s) 302, 324
MflI RGATCY 1 cut(s) 305
MluCI AATT 2 cut(s) 105, 293
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 2 cut(s) 165, 241
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 2 cut(s) 132, 174
MspR9I CCNGG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 199
NdeII GATC 3 cut(s) 3, 24, 305
NlaIII CATG 2 cut(s) 49, 59
NlaIV GGNNCC 2 cut(s) 236, 307
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 236, 307
PsuI RGATCY 1 cut(s) 305
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SaqAI TTAA 2 cut(s) 132, 174
Sau3AI GATC 3 cut(s) 3, 24, 305
ScrFI CCNGG 1 cut(s) 199
SetI ASST 5 cut(s) 98, 190, 203, 244, 260
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 2 cut(s) 105, 293
StyD4I CCNGG 1 cut(s) 197
TaqI TCGA 2 cut(s) 75, 114
TasI AATT 2 cut(s) 105, 293
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 2 cut(s) 132, 174
Tru9I TTAA 2 cut(s) 132, 174
TscAI CASTG 1 cut(s) 236
TspRI CASTG 1 cut(s) 236
XapI RAATTY 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.