Rmu_sc0000865.1_g000002

Anthocyanin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000865.1
OG0031102
Physical Location & Seq
Forward (+)
14127 .. 18610
4484 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1326 bp
atggctagggctaacttggttctacttctagttgtctctcttcttgtcctgatttcagtagctgagagtaaacgatttgctgaggaaggtgatacttgcactagtgtcgctcaaacgttcaaactgagtctcgatgccttcctttccattaaccctaatatcaattgcgacagcttctttgtgggtcaatggctttgtattgatggtgctccgaagtctcgaacagctctcgtatattttgagattgtgaccttctcactaaacagaggaaaacagagcaagaaacaaacagaggaaagagatggacggttcctacagcccagtgaggattattgggcaatgtcagatttctccaccacccggccttatatacactacgctgccggctctttactcccattgacaattgccgagtcctcaggtgatttcaaccgctttacatcccatcgtgtagaagatgttgaagaatcccaccttctcattccgccactgccgccggcgagcgtgtcagagaaccgcacacgtgtggtacctctcttggccttgcagatcactgtgttcccgaactctgagttttgcattggtgccaactgtgatcgtgtcttggctgatgagagttcctttcatcatttcttgaagttctgggcctctaggagctcccttttggattgggatcacgtaccagatttggaattggatgcttgtggtcaaggtagagctattggaattcggatcacgagacaattggagatggctcgaatcacgccaaggtggagattgttggaaaattgtggcttagatcagagccctttggaatcccacatcagaaagtcgcatttgggagatccggtcaggaattatgccctgtctgacggcacgccttctcagccgagtcgtctgacgggcccgaggggacctagtgttcggtggtcgatggccttggatgacgagcatctaccggcgggatcaggatctgctttgtttagattggattggaagttctcgatcgggtttgggctgcttgatttcgatctagggagaggggtgaagagtgatcttgtaggggaaaatgggattgttgcagctatgaatgccattggaaacaatgtgaaggattgggagaatggggttttgagaagggcagaggattggacttcaagttggctcaagggaactgctagcacaaatattcctagacattttaccaccttgctgggtcgccaagatttgatttttacaatgaccttgattttggttggggaacaaatggattccttcaattccatcttcaaacaagctttgaattttgctgaagtggaattgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747 GO:0033809
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

441

Amino Acids

49.17

Weight (kDa)

5.55

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 29 - 67 2.5e-07 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031102)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000865.1_g000002 Rmu_sc0003662.1_g000018

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 529
AccB1I GGYRCC 2 cut(s) 529, 584
AciI CCGC 5 cut(s) 433, 485, 494, 517, 962
AclI AACGTT 1 cut(s) 116
AclWI GGATC 5 cut(s) 681, 740, 839, 973, 979
AcsI RAATTY 2 cut(s) 726, 1303
AcvI CACGTG 1 cut(s) 524
AfaI GTAC 2 cut(s) 531, 681
AfiI CCNNNNNNNGG 1 cut(s) 360
AflIII ACRYGT 2 cut(s) 521, 523
AgsI TTSAA 8 cut(s) 121, 430, 464, 637, 1158, 1279, 1291, 1303
AhlI ACTAGT 1 cut(s) 101
AleI CACNNNNGTG 1 cut(s) 524
AloI GAACNNNNNNTCC 4 cut(s) 906, 938, 983, 1015
AluBI AGCT 7 cut(s) 62, 174, 227, 657, 719, 1085, 1298
AluI AGCT 7 cut(s) 62, 174, 227, 657, 719, 1085, 1298
Alw21I GWGCWC 2 cut(s) 211, 659
Alw26I GTCTC 4 cut(s) 40, 134, 222, 733
AlwI GGATC 5 cut(s) 681, 740, 839, 973, 979
AlwNI CAGNNNCTG 2 cut(s) 62, 974
Ama87I CYCGRG 1 cut(s) 907
AoxI GGCC 5 cut(s) 362, 540, 645, 904, 936
ApaI GGGCCC 1 cut(s) 908
ApeKI GCWGC 3 cut(s) 380, 1018, 1082
ApoI RAATTY 2 cut(s) 726, 1303
ArsI GACNNNNNNTTYG 6 cut(s) 161, 193, 906, 938, 1234, 1266
Asp718I GGTACC 1 cut(s) 529
AspS9I GGNCC 4 cut(s) 645, 904, 905, 914
AsuC2I CCSGG 1 cut(s) 361
AsuHPI GGTGA 3 cut(s) 101, 434, 1057
AsuNHI GCTAGC 1 cut(s) 1178
AvaI CYCGRG 1 cut(s) 907
AvaII GGWCC 1 cut(s) 914
AxyI CCTNAGG 1 cut(s) 418
BaeGI GKGCMC 1 cut(s) 908
BanI GGYRCC 2 cut(s) 529, 584
BanII GRGCYC 3 cut(s) 659, 809, 908
BauI CACGAG 1 cut(s) 736
BbrPI CACGTG 1 cut(s) 524
Bbv12I GWGCWC 2 cut(s) 211, 659
BbvCI CCTCAGC 1 cut(s) 81
BbvI GCAGC 3 cut(s) 367, 1005, 1094
BccI CCATC 6 cut(s) 197, 296, 453, 745, 928, 1292
BceAI ACGGC 1 cut(s) 889
BcgI CGANNNNNNTGC 2 cut(s) 88, 122
BcnI CCSGG 1 cut(s) 361
BcoDI GTCTC 4 cut(s) 40, 134, 222, 733
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 8 cut(s) 6, 29, 102, 651, 918, 1034, 1179, 1194
BfmI CTRYAG 1 cut(s) 314
BisI GCNGC 4 cut(s) 381, 494, 1019, 1083
BlsI GCNGC 4 cut(s) 382, 495, 1020, 1084
Bme1390I CCNGG 1 cut(s) 361
Bme18I GGWCC 1 cut(s) 914
BmeT110I CYCGRG 1 cut(s) 907
BmgT120I GGNCC 4 cut(s) 645, 904, 905, 914
BmiI GGNNCC 5 cut(s) 311, 531, 586, 906, 915
BmrFI CCNGG 1 cut(s) 361
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 3 cut(s) 124, 688, 961
BmtI GCTAGC 1 cut(s) 1182
BmuI ACTGGG 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 1151
BpuMI CCSGG 1 cut(s) 361
BsaAI YACGTR 2 cut(s) 524, 679
BsaBI GATNNNNATC 3 cut(s) 672, 970, 1029
BsaJI CCNNGG 3 cut(s) 767, 908, 939
BsaWI WCCGGW 1 cut(s) 847
BsaXI ACNNNNNCTCC 2 cut(s) 834, 864
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse118I RCCGGY 3 cut(s) 383, 496, 958
Bse1I ACTGG 1 cut(s) 321
Bse21I CCTNAGG 1 cut(s) 418
Bse3DI GCAATG 1 cut(s) 345
Bse8I GATNNNNATC 3 cut(s) 672, 970, 1029
BseDI CCNNGG 3 cut(s) 767, 908, 939
BseGI GGATG 3 cut(s) 440, 703, 949
BseJI GATNNNNATC 3 cut(s) 672, 970, 1029
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 6 cut(s) 54, 72, 116, 432, 561, 899
BseNI ACTGG 1 cut(s) 321
BseSI GKGCMC 1 cut(s) 908
BseXI GCAGC 3 cut(s) 367, 1005, 1094
BseYI CCCAGC 1 cut(s) 1213
Bsh1285I CGRYCG 1 cut(s) 1008
BshFI GGCC 5 cut(s) 364, 542, 647, 906, 938
BshNI GGYRCC 2 cut(s) 529, 584
BsiEI CGRYCG 1 cut(s) 1008
BsiHKAI GWGCWC 2 cut(s) 211, 659
BsiHKCI CYCGRG 1 cut(s) 907
BsiSI CCGG 5 cut(s) 361, 384, 497, 848, 959
BslFI GGGAC 1 cut(s) 927
BslI CCNNNNNNNGG 1 cut(s) 360
BsmAI GTCTC 4 cut(s) 40, 134, 222, 733
BsmFI GGGAC 1 cut(s) 927
BsmI GAATGC 1 cut(s) 1096
BsnI GGCC 5 cut(s) 364, 542, 647, 906, 938
BsoBI CYCGRG 1 cut(s) 907
Bsp120I GGGCCC 1 cut(s) 904
Bsp1286I GDGCHC 4 cut(s) 211, 659, 809, 908
BspACI CCGC 5 cut(s) 433, 485, 494, 517, 962
BspANI GGCC 5 cut(s) 364, 542, 647, 906, 938
BspCNI CTCAG 6 cut(s) 55, 73, 117, 431, 562, 898
BspLI GGNNCC 5 cut(s) 311, 531, 586, 906, 915
BspOI GCTAGC 1 cut(s) 1182
BspPI GGATC 5 cut(s) 681, 740, 839, 973, 979
BspT107I GGYRCC 2 cut(s) 529, 584
BsrDI GCAATG 1 cut(s) 345
BsrFI RCCGGY 3 cut(s) 383, 496, 958
BsrI ACTGG 1 cut(s) 321
BssAI RCCGGY 3 cut(s) 383, 496, 958
BssECI CCNNGG 3 cut(s) 767, 908, 939
BssSI CACGAG 1 cut(s) 736
BssT1I CCWWGG 2 cut(s) 767, 939
Bst2BI CACGAG 1 cut(s) 736
Bst4CI ACNGT 3 cut(s) 309, 556, 593
Bst6I CTCTTC 2 cut(s) 45, 1043
BstBAI YACGTR 2 cut(s) 524, 679
BstC8I GCNNGC 5 cut(s) 385, 498, 502, 878, 1180
BstDEI CTNAG 7 cut(s) 63, 81, 125, 418, 570, 796, 885
BstF5I GGATG 3 cut(s) 440, 703, 949
BstMAI GTCTC 4 cut(s) 40, 134, 222, 733
BstMCI CGRYCG 1 cut(s) 1008
BstMWI GCNNNNNNNGC 3 cut(s) 493, 886, 1091
BstSCI CCNGG 1 cut(s) 359
BstSFI CTRYAG 1 cut(s) 314
BstSLI GKGCMC 1 cut(s) 908
BstV1I GCAGC 3 cut(s) 367, 1005, 1094
BstX2I RGATCY 2 cut(s) 844, 971
BstXI CCANNNNNNTGG 1 cut(s) 1213
BstYI RGATCY 2 cut(s) 844, 971
Bsu36I CCTNAGG 1 cut(s) 418
BsuRI GGCC 5 cut(s) 364, 542, 647, 906, 938
BtsCI GGATG 3 cut(s) 440, 703, 949
BtsI GCAGTG 1 cut(s) 488
BtsIMutI CAGTG 3 cut(s) 328, 488, 552
Cac8I GCNNGC 5 cut(s) 385, 498, 502, 878, 1180
CaiI CAGNNNCTG 2 cut(s) 62, 974
Cfr10I RCCGGY 3 cut(s) 383, 496, 958
Cfr13I GGNCC 4 cut(s) 645, 904, 905, 914
Csp6I GTAC 2 cut(s) 530, 680
CviQI GTAC 2 cut(s) 530, 680
DdeI CTNAG 7 cut(s) 63, 81, 125, 418, 570, 796, 885
Eam1104I CTCTTC 2 cut(s) 45, 1043
EarI CTCTTC 2 cut(s) 45, 1043
EciI GGCGGA 1 cut(s) 474
Ecl136II GAGCTC 1 cut(s) 657
Eco130I CCWWGG 2 cut(s) 767, 939
Eco24I GRGCYC 3 cut(s) 659, 809, 908
Eco47I GGWCC 1 cut(s) 914
Eco53kI GAGCTC 1 cut(s) 657
Eco72I CACGTG 1 cut(s) 524
Eco81I CCTNAGG 1 cut(s) 418
Eco88I CYCGRG 1 cut(s) 907
EcoICRI GAGCTC 1 cut(s) 657
EcoO109I RGGNCCY 1 cut(s) 914
EcoRI GAATTC 1 cut(s) 726
EcoT14I CCWWGG 2 cut(s) 767, 939
EcoT38I GRGCYC 3 cut(s) 659, 809, 908
ErhI CCWWGG 2 cut(s) 767, 939
FaiI YATR 5 cut(s) 235, 369, 371, 861, 1088
FaqI GGGAC 1 cut(s) 927
FauI CCCGC 1 cut(s) 955
Fnu4HI GCNGC 4 cut(s) 381, 494, 1019, 1083
FokI GGATG 3 cut(s) 427, 710, 956
FriOI GRGCYC 3 cut(s) 659, 809, 908
Fsp4HI GCNGC 4 cut(s) 381, 494, 1019, 1083
FspBI CTAG 8 cut(s) 6, 29, 102, 651, 918, 1034, 1179, 1194
GluI GCNGC 4 cut(s) 381, 494, 1019, 1083
GsaI CCCAGC 1 cut(s) 1217
HaeIII GGCC 5 cut(s) 364, 542, 647, 906, 938
HapII CCGG 5 cut(s) 361, 384, 497, 848, 959
HindIII AAGCTT 1 cut(s) 1296
HinfI GANTC 7 cut(s) 127, 413, 467, 759, 815, 892, 1271
HpaII CCGG 5 cut(s) 361, 384, 497, 848, 959
HphI GGTGA 3 cut(s) 101, 434, 1057
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 9 cut(s) 213, 346, 511, 571, 732, 804, 827, 871, 900
Hpy188III TCNNGA 9 cut(s) 49, 131, 219, 562, 634, 736, 853, 969, 1003
Hpy8I GTNNAC 1 cut(s) 71
HpyAV CCTTC 8 cut(s) 80, 148, 262, 485, 891, 1105, 1131, 1285
HpyCH4III ACNGT 3 cut(s) 309, 556, 593
HpyCH4IV ACGT 3 cut(s) 116, 523, 678
HpyCH4V TGCA 4 cut(s) 99, 547, 579, 1082
HpyF10VI GCNNNNNNNGC 3 cut(s) 493, 886, 1091
HpyF3I CTNAG 7 cut(s) 63, 81, 125, 418, 570, 796, 885
HpySE526I ACGT 3 cut(s) 116, 523, 678
KpnI GGTACC 1 cut(s) 533
KroI GCCGGC 2 cut(s) 383, 496
KroNI GCCGGC 2 cut(s) 385, 498
LmnI GCTCC 3 cut(s) 214, 654, 662
Lsp1109I GCAGC 3 cut(s) 367, 1005, 1094
LweI GCATC 3 cut(s) 124, 688, 961
MaeI CTAG 8 cut(s) 6, 29, 102, 651, 918, 1034, 1179, 1194
MaeII ACGT 3 cut(s) 116, 523, 678
MaeIII GTNAC 1 cut(s) 247
MboII GAAGA 5 cut(s) 32, 467, 476, 1060, 1279
MfeI CAATTG 3 cut(s) 163, 405, 743
MflI RGATCY 2 cut(s) 844, 971
MhlI GDGCHC 4 cut(s) 211, 659, 809, 908
MlyI GAGTC 3 cut(s) 136, 422, 901
MmeI TCCRAC 1 cut(s) 762
MreI CGCCGGCG 1 cut(s) 496
MroNI GCCGGC 2 cut(s) 383, 496
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 524
MspI CCGG 5 cut(s) 361, 384, 497, 848, 959
MspR9I CCNGG 1 cut(s) 361
MunI CAATTG 3 cut(s) 163, 405, 743
Mva1269I GAATGC 1 cut(s) 1096
MwoI GCNNNNNNNGC 3 cut(s) 493, 886, 1091
NaeI GCCGGC 2 cut(s) 385, 498
NciI CCSGG 1 cut(s) 361
NgoMIV GCCGGC 2 cut(s) 383, 496
NheI GCTAGC 1 cut(s) 1178
NlaIV GGNNCC 5 cut(s) 311, 531, 586, 906, 915
NmeAIII GCCGAG 2 cut(s) 436, 915
NmuCI GTSAC 1 cut(s) 247
OliI CACNNNNGTG 1 cut(s) 524
PctI GAATGC 1 cut(s) 1096
PdiI GCCGGC 2 cut(s) 385, 498
PfeI GAWTC 4 cut(s) 467, 759, 815, 1271
PkrI GCNGC 4 cut(s) 382, 495, 1020, 1084
Ple19I CGATCG 1 cut(s) 1008
PleI GAGTC 3 cut(s) 135, 421, 900
PmaCI CACGTG 1 cut(s) 524
PmlI CACGTG 1 cut(s) 524
PpsI GAGTC 3 cut(s) 135, 421, 900
Ppu21I YACGTR 2 cut(s) 524, 679
PpuMI RGGWCCY 1 cut(s) 914
Psp124BI GAGCTC 1 cut(s) 659
Psp1406I AACGTT 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 914
PspCI CACGTG 1 cut(s) 524
PspFI CCCAGC 1 cut(s) 1213
PspN4I GGNNCC 5 cut(s) 311, 531, 586, 906, 915
PspOMI GGGCCC 1 cut(s) 904
PspPI GGNCC 4 cut(s) 645, 904, 905, 914
PspPPI RGGWCCY 1 cut(s) 914
PstNI CAGNNNCTG 2 cut(s) 62, 974
PsuI RGATCY 2 cut(s) 844, 971
PvuI CGATCG 1 cut(s) 1008
RsaI GTAC 2 cut(s) 531, 681
RsaNI GTAC 2 cut(s) 530, 680
RseI CAYNNNNRTG 1 cut(s) 524
SacI GAGCTC 1 cut(s) 659
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 4 cut(s) 381, 494, 1019, 1083
Sau96I GGNCC 4 cut(s) 645, 904, 905, 914
SchI GAGTC 3 cut(s) 136, 422, 901
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 4 cut(s) 211, 659, 809, 908
SfaNI GCATC 3 cut(s) 124, 688, 961
SfcI CTRYAG 1 cut(s) 314
SgrAI CRCCGGYG 1 cut(s) 496
SinI GGWCC 1 cut(s) 914
SmiMI CAYNNNNRTG 1 cut(s) 524
SmlI CTYRAG 1 cut(s) 1166
SmoI CTYRAG 1 cut(s) 1166
SpeI ACTAGT 1 cut(s) 101
SsiI CCGC 5 cut(s) 433, 485, 494, 517, 962
SspI AATATT 1 cut(s) 1189
SspMI CTAG 8 cut(s) 6, 29, 102, 651, 918, 1034, 1179, 1194
SstI GAGCTC 1 cut(s) 659
StyD4I CCNGG 1 cut(s) 359
StyI CCWWGG 2 cut(s) 767, 939
TaaI ACNGT 3 cut(s) 309, 556, 593
TaiI ACGT 3 cut(s) 119, 526, 681
TaqI TCGA 6 cut(s) 132, 220, 757, 932, 1004, 1029
TauI GCSGC 1 cut(s) 496
TfiI GAWTC 4 cut(s) 467, 759, 815, 1271
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 3 cut(s) 328, 495, 559
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 3 cut(s) 380, 1018, 1082
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 2 cut(s) 614, 1103
TspRI CASTG 3 cut(s) 328, 495, 559
VpaK11BI GGWCC 1 cut(s) 914
XapI RAATTY 2 cut(s) 726, 1303
XspI CTAG 8 cut(s) 6, 29, 102, 651, 918, 1034, 1179, 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.