Rmu_sc0000873.1_g000001

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000873.1
N/A
Physical Location & Seq
Reverse (-)
1 .. 2152
2152 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 516 bp
atggccaagaagctgtgcacgagaagagagctactggaccgatggagaggcattgaggaagaagcagacgaagacgacgatcgcattgagccttctaaacgtcaccgtcttcacaagaataaagaacaatggtttgcagatacatttaatttcttgatctgtttgccaaaagaaaatcatatttggtgtgggtcatgggatttaatggggcctcttctggagacattttacaactattttaatgatgagcatagtgattctcctcttagacaactatggaggagaatctctgaggaaatgcggcaatgtatccagtgcatttcccagcattatcagacccaagaaatgtatagcactgaatatgagtcgagttctattggaccccttctggatgttttgcgaaggcttgatgaggaaagggtgacacaacacttgatagagatgaatactacattagctcgaaaggaatatgatcctgcccgtgataatgctgaagttgttagtgtcatgtatgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 SEN1_N

Protein Analysis

172

Amino Acids

20.82

Weight (kDa)

5.06

Isoelectric Point (pI)

75.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 301
AclWI GGATC 1 cut(s) 467
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 513
AluBI AGCT 3 cut(s) 13, 31, 458
AluI AGCT 3 cut(s) 13, 31, 458
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 215
Alw44I GTGCAC 1 cut(s) 16
AlwI GGATC 1 cut(s) 467
AoxI GGCC 2 cut(s) 3, 209
ApaLI GTGCAC 1 cut(s) 16
AspS9I GGNCC 3 cut(s) 37, 209, 380
AsuHPI GGTGA 2 cut(s) 95, 433
AvaII GGWCC 2 cut(s) 37, 380
BaeGI GKGCMC 1 cut(s) 20
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 19
BbsI GAAGAC 2 cut(s) 78, 101
Bbv12I GWGCWC 1 cut(s) 20
BccI CCATC 1 cut(s) 36
BciVI GTATCC 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 215
BfuI GTATCC 1 cut(s) 320
BisI GCNGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 303
Bme18I GGWCC 2 cut(s) 37, 380
BmgT120I GGNCC 3 cut(s) 37, 209, 380
BmiI GGNNCC 2 cut(s) 210, 382
BpiI GAAGAC 2 cut(s) 78, 101
BpmI CTGGAG 1 cut(s) 239
Bse1I ACTGG 2 cut(s) 39, 313
Bse3DI GCAATG 1 cut(s) 311
BseGI GGATG 1 cut(s) 397
BseMI GCAATG 1 cut(s) 311
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 2 cut(s) 39, 313
BseRI GAGGAG 2 cut(s) 252, 295
BseSI GKGCMC 1 cut(s) 20
BseYI CCCAGC 1 cut(s) 324
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 2 cut(s) 5, 211
BsiEI CGRYCG 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 215
BsnI GGCC 2 cut(s) 5, 211
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 3 cut(s) 79, 156, 472
BspACI CCGC 1 cut(s) 301
BspANI GGCC 2 cut(s) 5, 211
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 210, 382
BspPI GGATC 1 cut(s) 467
BsrDI GCAATG 1 cut(s) 311
BsrI ACTGG 2 cut(s) 39, 313
BssMI GATC 3 cut(s) 79, 156, 472
BssSI CACGAG 1 cut(s) 19
Bst2BI CACGAG 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 2 cut(s) 19, 219
BstDEI CTNAG 2 cut(s) 266, 291
BstF5I GGATG 1 cut(s) 397
BstKTI GATC 3 cut(s) 82, 159, 475
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 3 cut(s) 79, 156, 472
BstMCI CGRYCG 1 cut(s) 82
BstSLI GKGCMC 1 cut(s) 20
BstV2I GAAGAC 2 cut(s) 78, 101
BsuI GTATCC 1 cut(s) 320
BsuRI GGCC 2 cut(s) 5, 211
BtsCI GGATG 1 cut(s) 397
BtsIMutI CAGTG 2 cut(s) 320, 354
Cfr13I GGNCC 3 cut(s) 37, 209, 380
CviAII CATG 2 cut(s) 195, 508
CviJI RGCY 7 cut(s) 5, 13, 31, 91, 211, 406, 458
CviKI_1 RGCY 7 cut(s) 5, 13, 31, 91, 211, 406, 458
DdeI CTNAG 2 cut(s) 266, 291
DpnI GATC 3 cut(s) 81, 158, 474
DpnII GATC 3 cut(s) 79, 156, 472
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 19, 219
EarI CTCTTC 2 cut(s) 19, 219
Eco47I GGWCC 2 cut(s) 37, 380
Eco57I CTGAAG 1 cut(s) 513
EcoO109I RGGNCCY 1 cut(s) 209
FaeI CATG 2 cut(s) 198, 511
FaiI YATR 9 cut(s) 180, 196, 252, 277, 351, 363, 471, 509, 513
FatI CATG 2 cut(s) 194, 507
Fnu4HI GCNGC 1 cut(s) 302
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 1 cut(s) 302
GluI GCNGC 1 cut(s) 302
GsaI CCCAGC 1 cut(s) 328
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 2 cut(s) 5, 211
Hin1II CATG 2 cut(s) 198, 511
HinfI GANTC 3 cut(s) 257, 285, 365
HphI GGTGA 2 cut(s) 95, 433
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 2 cut(s) 292, 336
Hpy188III TCNNGA 3 cut(s) 154, 218, 389
Hpy8I GTNNAC 1 cut(s) 18
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 102, 395, 396
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 3 cut(s) 18, 137, 318
HpyF3I CTNAG 2 cut(s) 266, 291
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 2 cut(s) 198, 511
Kzo9I GATC 3 cut(s) 79, 156, 472
LpnPI CCDG 6 cut(s) 20, 203, 326, 338, 374, 489
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 2 cut(s) 101, 421
MalI GATC 3 cut(s) 81, 158, 474
MboI GATC 3 cut(s) 79, 156, 472
MboII GAAGA 5 cut(s) 36, 71, 83, 101, 206
MhlI GDGCHC 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 148
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 374
MnlI CCTC 7 cut(s) 41, 49, 222, 273, 273, 286, 406
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 147, 203, 240
Msp20I TGGCCA 1 cut(s) 5
NdeII GATC 3 cut(s) 79, 156, 472
NlaIII CATG 2 cut(s) 198, 511
NlaIV GGNNCC 2 cut(s) 210, 382
NmuCI GTSAC 2 cut(s) 101, 421
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 2 cut(s) 257, 285
PkrI GCNGC 1 cut(s) 303
Ple19I CGATCG 1 cut(s) 82
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 324
PspN4I GGNNCC 2 cut(s) 210, 382
PspPI GGNCC 3 cut(s) 37, 209, 380
PvuI CGATCG 1 cut(s) 82
SaqAI TTAA 3 cut(s) 147, 203, 240
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 3 cut(s) 79, 156, 472
Sau96I GGNCC 3 cut(s) 37, 209, 380
SchI GAGTC 1 cut(s) 374
SduI GDGCHC 1 cut(s) 20
SetI ASST 4 cut(s) 15, 33, 103, 460
SinI GGWCC 2 cut(s) 37, 380
Sse9I AATT 1 cut(s) 148
SsiI CCGC 1 cut(s) 301
TaaI ACNGT 1 cut(s) 107
TaiI ACGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 368, 460
TaqII GACCGA 1 cut(s) 54
TasI AATT 1 cut(s) 148
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 2 cut(s) 257, 285
Tru1I TTAA 3 cut(s) 147, 203, 240
Tru9I TTAA 3 cut(s) 147, 203, 240
TscAI CASTG 2 cut(s) 320, 361
TseFI GTSAC 2 cut(s) 101, 421
Tsp45I GTSAC 2 cut(s) 101, 421
TspDTI ATGAA 1 cut(s) 458
TspRI CASTG 2 cut(s) 320, 361
VneI GTGCAC 1 cut(s) 16
VpaK11BI GGWCC 2 cut(s) 37, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.