Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000879.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

133176 .. 133469

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgcgtgtctatagcatggtgaaatatgcagccatagctcggggagatgctgagctgttcatgaagtttgcaaggacagggtacaaggagaagatatgggatcatgctgcaggtgttgtcattgtagaagaggctgggggtgtggtcactgatgctggagggcggcccctggacttttcaaagggaccatacttagaaggccttgatagaggaataattgtttgttctggggccacactgcatgagaaaatcattgatgctgtttatgccagttgggactcttctaatttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008252 GO:0008441 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 ko01130 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

97

Amino Acids

10.53

Weight (kDa)

5.59

Isoelectric Point (pI)

11.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	4 - 90	3.1e-19	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	101
Acc36I	ACCTGC	1 cut(s)	101
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	2 cut(s)	38, 55
AluI	AGCT	2 cut(s)	38, 55
AlwI	GGATC	1 cut(s)	108
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	3 cut(s)	164, 199, 231
ApeKI	GCWGC	2 cut(s)	29, 107
AspS9I	GGNCC	3 cut(s)	165, 185, 231
AsuHPI	GGTGA	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	41, 94
BciT130I	CCWGG	1 cut(s)	170
BfmI	CTRYAG	2 cut(s)	10, 108
BfuAI	ACCTGC	1 cut(s)	101
BisI	GCNGC	3 cut(s)	30, 108, 164
BlpI	GCTNAGC	1 cut(s)	51
BlsI	GCNGC	3 cut(s)	31, 109, 165
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	185
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	3 cut(s)	165, 185, 231
BmiI	GGNNCC	3 cut(s)	167, 186, 232
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	3 cut(s)	37, 142, 247
BpmI	CTGGAG	1 cut(s)	177
Bpu1102I	GCTNAGC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	41, 94
BseYI	CCCAGC	1 cut(s)	134
BshFI	GGCC	3 cut(s)	166, 201, 233
BsiHKCI	CYCGRG	1 cut(s)	39
BslFI	GGGAC	2 cut(s)	198, 290
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmFI	GGGAC	2 cut(s)	198, 290
BsnI	GGCC	3 cut(s)	166, 201, 233
BsoBI	CYCGRG	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	100
Bsp1720I	GCTNAGC	1 cut(s)	51
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	3 cut(s)	166, 201, 233
BspCNI	CTCAG	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	3 cut(s)	167, 186, 232
BspMAI	CTGCAG	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	101
BspPI	GGATC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	170
Bst6I	CTCTTC	2 cut(s)	123, 286
BstDEI	CTNAG	2 cut(s)	51, 193
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 266
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	2 cut(s)	10, 108
BstV1I	GCAGC	2 cut(s)	41, 94
BsuRI	GGCC	3 cut(s)	166, 201, 233
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	2 cut(s)	147, 236
BveI	ACCTGC	1 cut(s)	101
CciI	TCATGA	1 cut(s)	60
Cfr13I	GGNCC	3 cut(s)	165, 185, 231
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	4 cut(s)	16, 61, 104, 242
CviJI	RGCY	7 cut(s)	32, 38, 55, 134, 166, 201, 233
CviKI_1	RGCY	7 cut(s)	32, 38, 55, 134, 166, 201, 233
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	2 cut(s)	51, 193
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	123, 286
EarI	CTCTTC	2 cut(s)	123, 286
Eco147I	AGGCCT	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	168
FaeI	CATG	4 cut(s)	19, 64, 107, 245
FaqI	GGGAC	2 cut(s)	198, 290
FatI	CATG	4 cut(s)	15, 60, 103, 241
Fnu4HI	GCNGC	3 cut(s)	30, 108, 164
Fsp4HI	GCNGC	3 cut(s)	30, 108, 164
GluI	GCNGC	3 cut(s)	30, 108, 164
GsaI	CCCAGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	166, 201, 233
Hin1II	CATG	4 cut(s)	19, 64, 107, 245
HinfI	GANTC	1 cut(s)	278
HphI	GGTGA	1 cut(s)	31
Hpy188III	TCNNGA	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	191
HpyCH4V	TGCA	4 cut(s)	29, 71, 110, 241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 266
HpyF3I	CTNAG	2 cut(s)	51, 193
Hsp92II	CATG	4 cut(s)	19, 64, 107, 245
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	8 cut(s)	63, 96, 120, 141, 155, 182, 213, 283
Lsp1109I	GCAGC	2 cut(s)	41, 94
LweI	GCATC	3 cut(s)	37, 142, 247
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	3 cut(s)	103, 140, 273
MluCI	AATT	2 cut(s)	216, 286
MlyI	GAGTC	1 cut(s)	272
MnlI	CCTC	3 cut(s)	124, 152, 203
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	35, 266
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	4 cut(s)	19, 64, 107, 245
NlaIV	GGNNCC	3 cut(s)	167, 186, 232
NmuCI	GTSAC	1 cut(s)	145
PagI	TCATGA	1 cut(s)	60
PaqCI	CACCTGC	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	201
PkrI	GCNGC	3 cut(s)	31, 109, 165
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	3 cut(s)	167, 186, 232
PspPI	GGNCC	3 cut(s)	165, 185, 231
PstI	CTGCAG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SatI	GCNGC	3 cut(s)	30, 108, 164
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	3 cut(s)	165, 185, 231
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	3 cut(s)	40, 57, 115
SfaNI	GCATC	3 cut(s)	37, 142, 247
SfcI	CTRYAG	2 cut(s)	10, 108
SinI	GGWCC	1 cut(s)	185
Sse9I	AATT	2 cut(s)	216, 286
SseBI	AGGCCT	1 cut(s)	201
SsiI	CCGC	1 cut(s)	163
StuI	AGGCCT	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	168
TasI	AATT	2 cut(s)	216, 286
TauI	GCSGC	1 cut(s)	166
TscAI	CASTG	2 cut(s)	154, 243
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	29, 107
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	49, 77
TspRI	CASTG	2 cut(s)	154, 243
VpaK11BI	GGWCC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.