Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000898.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

202902 .. 205173

Gene Structure 2272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atggtccttgcgcacccgtatgtggtggccttgcacggcggcgcggcctgtaacggcggcggaaaagactgcagagagaagatatcctccacaaagacatgtctcagctgttcgcaaaagaggccaggaagaaatgctgccgcggaggccaggaattttggtgaagagcagtcggatatgggtgacaaaccatcctcatcaaatatgaataccatcaagcaacaagccagagaggatgatgttaaggaggaagagtttcacaagaatgaattgggagggaatgtttctgaagtaactggaggtggagttcaaactgaatacaagggacatgccgtagaagaaatggagagaaaagatcaatgcatagtatattctgggatcaatgaggtttcggaagatacaagaaaagatgtcattgaacctcctcaagctagaatgcaatggatgtcaagggacgagggaggatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

156

Amino Acids

17.05

Weight (kDa)

5.17

Isoelectric Point (pI)

54.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	12
AccII	CGCG	2 cut(s)	44, 143
AciI	CCGC	6 cut(s)	39, 44, 57, 60, 141, 143
AclWI	GGATC	1 cut(s)	386
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	98
AgsI	TTSAA	2 cut(s)	311, 419
AjnI	CCWGG	2 cut(s)	124, 149
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
AluBI	AGCT	2 cut(s)	108, 431
AluI	AGCT	2 cut(s)	108, 431
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	386
AoxI	GGCC	4 cut(s)	27, 45, 122, 147
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	154
Asp700I	GAANNNNTTC	1 cut(s)	255
AspLEI	GCGC	2 cut(s)	13, 44
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	173, 194
AvaII	GGWCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	2 cut(s)	199, 221
BceAI	ACGGC	3 cut(s)	52, 70, 317
BciT130I	CCWGG	2 cut(s)	126, 151
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	432
BfmI	CTRYAG	1 cut(s)	70
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	5 cut(s)	40, 45, 58, 138, 141
BlsI	GCNGC	5 cut(s)	41, 46, 59, 139, 142
Bme1390I	CCNGG	2 cut(s)	126, 151
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	126, 151
BpmI	CTGGAG	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	141
BsaXI	ACNNNNNCTCC	6 cut(s)	239, 267, 269, 291, 297, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	446
BseBI	CCWGG	2 cut(s)	126, 151
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	4 cut(s)	191, 241, 450, 470
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	446
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	414
BseXI	GCAGC	1 cut(s)	124
Bsh1236I	CGCG	2 cut(s)	44, 143
BshFI	GGCC	4 cut(s)	29, 47, 124, 149
BslFI	GGGAC	2 cut(s)	339, 467
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	2 cut(s)	339, 467
BsmI	GAATGC	1 cut(s)	441
BsnI	GGCC	4 cut(s)	29, 47, 124, 149
Bsp143I	GATC	2 cut(s)	355, 378
BspACI	CCGC	6 cut(s)	39, 44, 57, 60, 141, 143
BspANI	GGCC	4 cut(s)	29, 47, 124, 149
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	2 cut(s)	44, 143
BspMAI	CTGCAG	1 cut(s)	74
BspPI	GGATC	1 cut(s)	386
BspQI	GCTCTTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	2 cut(s)	355, 378
Bst2UI	CCWGG	2 cut(s)	126, 151
Bst6I	CTCTTC	2 cut(s)	159, 246
BstDEI	CTNAG	1 cut(s)	104
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	4 cut(s)	191, 241, 450, 470
BstFNI	CGCG	2 cut(s)	44, 143
BstHHI	GCGC	2 cut(s)	13, 44
BstKTI	GATC	2 cut(s)	358, 381
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	355, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 146
BstNI	CCWGG	2 cut(s)	126, 151
BstNSI	RCATGY	2 cut(s)	102, 332
BstSCI	CCNGG	2 cut(s)	124, 149
BstSFI	CTRYAG	1 cut(s)	70
BstUI	CGCG	2 cut(s)	44, 143
BstV1I	GCAGC	1 cut(s)	124
BsuRI	GGCC	4 cut(s)	29, 47, 124, 149
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	4 cut(s)	191, 241, 450, 470
CfoI	GCGC	2 cut(s)	13, 44
Cfr13I	GGNCC	1 cut(s)	4
Cfr42I	CCGCGG	1 cut(s)	144
CviAII	CATG	2 cut(s)	99, 329
CviJI	RGCY	7 cut(s)	29, 47, 108, 124, 149, 227, 431
CviKI_1	RGCY	7 cut(s)	29, 47, 108, 124, 149, 227, 431
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	2 cut(s)	357, 380
DpnII	GATC	2 cut(s)	355, 378
Eam1104I	CTCTTC	2 cut(s)	159, 246
EarI	CTCTTC	2 cut(s)	159, 246
EciI	GGCGGA	1 cut(s)	75
Eco32I	GATATC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	309
EcoRII	CCWGG	2 cut(s)	124, 149
EcoRV	GATATC	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	365
FaeI	CATG	2 cut(s)	102, 332
FaiI	YATR	7 cut(s)	21, 100, 179, 206, 330, 365, 370
FaqI	GGGAC	2 cut(s)	339, 467
FatI	CATG	2 cut(s)	98, 328
Fnu4HI	GCNGC	5 cut(s)	40, 45, 58, 138, 141
FokI	GGATG	3 cut(s)	178, 248, 457
Fsp4HI	GCNGC	5 cut(s)	40, 45, 58, 138, 141
FspBI	CTAG	1 cut(s)	432
FspI	TGCGCA	1 cut(s)	12
GlaI	GCGC	2 cut(s)	12, 43
GluI	GCNGC	5 cut(s)	40, 45, 58, 138, 141
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	4 cut(s)	29, 47, 124, 149
HhaI	GCGC	2 cut(s)	13, 44
Hin1II	CATG	2 cut(s)	102, 332
Hin6I	GCGC	2 cut(s)	11, 42
HinP1I	GCGC	2 cut(s)	11, 42
HphI	GGTGA	2 cut(s)	173, 194
Hpy188I	TCNGA	3 cut(s)	175, 289, 394
HpyCH4V	TGCA	4 cut(s)	34, 72, 363, 439
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 146
HpyF3I	CTNAG	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	102, 332
HspAI	GCGC	2 cut(s)	11, 42
KspI	CCGCGG	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	355, 378
LguI	GCTCTTC	1 cut(s)	159
LpnPI	CCDG	8 cut(s)	61, 111, 136, 138, 163, 241, 282, 360
Lsp1109I	GCAGC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	432
MaeIII	GTNAC	3 cut(s)	50, 182, 292
MalI	GATC	2 cut(s)	357, 380
MboI	GATC	2 cut(s)	355, 378
MboII	GAAGA	6 cut(s)	91, 141, 176, 263, 350, 407
MluCI	AATT	2 cut(s)	154, 269
MmeI	TCCRAC	1 cut(s)	153
Mph1103I	ATGCAT	1 cut(s)	365
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	2 cut(s)	18, 264
MspA1I	CMGCKG	2 cut(s)	108, 143
MspR9I	CCNGG	2 cut(s)	126, 151
Mva1269I	GAATGC	1 cut(s)	441
MvaI	CCWGG	2 cut(s)	126, 151
MvnI	CGCG	2 cut(s)	44, 143
MwoI	GCNNNNNNNGC	2 cut(s)	121, 146
NdeII	GATC	2 cut(s)	355, 378
NlaIII	CATG	2 cut(s)	102, 332
NmuCI	GTSAC	1 cut(s)	182
NsbI	TGCGCA	1 cut(s)	12
NsiI	ATGCAT	1 cut(s)	365
NspI	RCATGY	2 cut(s)	102, 332
PciI	ACATGT	1 cut(s)	98
PciSI	GCTCTTC	1 cut(s)	159
PctI	GAATGC	1 cut(s)	441
PdmI	GAANNNNTTC	1 cut(s)	255
PkrI	GCNGC	5 cut(s)	41, 46, 59, 139, 142
PscI	ACATGT	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	124, 149
PspGI	CCWGG	2 cut(s)	124, 149
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	108
RseI	CAYNNNNRTG	2 cut(s)	18, 264
SacII	CCGCGG	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	5 cut(s)	40, 45, 58, 138, 141
Sau3AI	GATC	2 cut(s)	355, 378
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	126, 151
SetI	ASST	5 cut(s)	110, 304, 390, 424, 433
SfcI	CTRYAG	1 cut(s)	70
Sfr303I	CCGCGG	1 cut(s)	144
SgrBI	CCGCGG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	18, 264
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
Sse9I	AATT	2 cut(s)	154, 269
SsiI	CCGC	6 cut(s)	39, 44, 57, 60, 141, 143
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	2 cut(s)	124, 149
TasI	AATT	2 cut(s)	154, 269
TauI	GCSGC	4 cut(s)	42, 47, 60, 143
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	221, 282
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	2 cut(s)	102, 332
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	1 cut(s)	432
Zsp2I	ATGCAT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.