Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000940.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7973 .. 11298

Gene Structure 3326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atgtcttcctctaaggtctcagtgatgctttgcctttctgcagtgttgttaaattctttcatggtcatggctgcagccggtaatttctatgaagactttgacatcacattcggcgaacaacgtgctaagattctcaacggaggacaacttctcacactcgacctcgaccagtattccggatctggtttcaagtccaagaatgagtacttgtttggaaggatcgacatgcaaatcaaacttgttgctggcaactcggctggcactgtcactgcatattatgtaagtcagctagcacattgtgctactaatatttccactttaaacacacgtcttgaagatctcgtcgttcccattctggaaagctatcatgcgtctcaaacggacattctggccaaaaccggtaatttctatgaagactttgacatcacattcggcgaacaacgtgctaagattctcaacggaggacaacttctcacactcgacctcgaccagtattccggatctggtttcaagtccaagaatgagtacttgtttggaaggatcgacatgcaaatcaaacttgttgctggcaactcggctggcactgtcactgcatattatttgtcttctcaaggtccaactcatgatgaaatcgacttcgagtttttggggaactcttctggtgaaccctacactctccacaccaatgtgttcagccaggggaaagggaacagagaacaacaattccatctttggtttgatcctacaaacgccttccacacctactcgcttgtctggaacagccaacgcattatattcttggtggataatattccaattagagtgttcaacaacttggagtcagttggtgttccattccccaaaacccaaccgatgaggatttactcgagtctatggaatgctgatgactgggctacacaaggtgggcgtgtgaagactgactggactcacgctcctttcactgcctcgtacagaaacttcaaggccaatgcctgcgtcgctggctcatcgtcatcatcatgcggtgtctccactactgcttcaactaattccttaactgatgaacagagtgcatggcagaatcaaggtctagatgccgcaggccgaaacaggattcgatgggtgcagcagaagttcatggtctacaactactgttctgacctaaaacgatttccccaaggtcttccggtagaatgtacacgatcaaggttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

404

Amino Acids

45.02

Weight (kDa)

6.0

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	30 - 96	1.4e-13	Glycosyl hydrolases family 16
Glyco_hydro_16	PF00722	137 - 316	1.2e-66	Glycosyl hydrolases family 16
XET_C	PF06955	356 - 399	9e-19	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1143
AccIII	TCCGGA	2 cut(s)	176, 497
AciI	CCGC	2 cut(s)	1023, 1098
AclWI	GGATC	5 cut(s)	187, 227, 508, 548, 734
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	52
AdeI	CACNNNGTG	2 cut(s)	299, 923
AfaI	GTAC	4 cut(s)	206, 527, 971, 1198
AflIII	ACRYGT	1 cut(s)	326
AgeI	ACCGGT	1 cut(s)	398
AgsI	TTSAA	6 cut(s)	190, 335, 511, 829, 982, 1044
AjiI	CACGTC	1 cut(s)	329
AjnI	CCWGG	1 cut(s)	696
AleI	CACNNNNGTG	1 cut(s)	686
AloI	GAACNNNNNNTCC	2 cut(s)	708, 740
AluBI	AGCT	2 cut(s)	289, 363
AluI	AGCT	2 cut(s)	289, 363
Alw26I	GTCTC	3 cut(s)	22, 378, 1033
AlwI	GGATC	5 cut(s)	187, 227, 508, 548, 734
Ama87I	CYCGRG	1 cut(s)	886
Aor13HI	TCCGGA	2 cut(s)	176, 497
AoxI	GGCC	3 cut(s)	390, 984, 1102
ApeKI	GCWGC	3 cut(s)	71, 74, 1126
ApoI	RAATTY	1 cut(s)	52
ArsI	GACNNNNNNTTYG	4 cut(s)	92, 124, 413, 445
AsiGI	ACCGGT	1 cut(s)	398
AspS9I	GGNCC	1 cut(s)	614
AsuHPI	GGTGA	1 cut(s)	674
AsuNHI	GCTAGC	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	886
AvaII	GGWCC	1 cut(s)	614
BalI	TGGCCA	1 cut(s)	392
BarI	GAAGNNNNNNTAC	2 cut(s)	962, 994
BbsI	GAAGAC	5 cut(s)	99, 420, 597, 941, 1175
BbvI	GCAGC	3 cut(s)	58, 86, 1138
BccI	CCATC	2 cut(s)	735, 1113
BcgI	CGANNNNNNTGC	4 cut(s)	104, 138, 425, 459
BciT130I	CCWGG	1 cut(s)	698
BcoDI	GTCTC	3 cut(s)	22, 378, 1033
BfaI	CTAG	3 cut(s)	290, 1091, 1213
BfmI	CTRYAG	2 cut(s)	39, 72
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	4 cut(s)	72, 75, 1098, 1127
BlsI	GCNGC	4 cut(s)	73, 76, 1099, 1128
BmcAI	AGTACT	2 cut(s)	206, 527
Bme1390I	CCNGG	1 cut(s)	698
Bme18I	GGWCC	1 cut(s)	614
BmeT110I	CYCGRG	1 cut(s)	886
BmgBI	CACGTC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	614
BmrFI	CCNGG	1 cut(s)	698
BmrI	ACTGGG	1 cut(s)	919
BmsI	GCATC	2 cut(s)	15, 1084
BmtI	GCTAGC	1 cut(s)	293
BmuI	ACTGGG	1 cut(s)	919
BpiI	GAAGAC	5 cut(s)	99, 420, 597, 941, 1175
BpuEI	CTTGAG	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	697, 1177
BsaWI	WCCGGW	4 cut(s)	176, 398, 497, 1186
BsaXI	ACNNNNNCTCC	2 cut(s)	937, 967
Bse118I	RCCGGY	2 cut(s)	77, 398
Bse1I	ACTGG	4 cut(s)	169, 490, 914, 947
BseAI	TCCGGA	2 cut(s)	176, 497
BseBI	CCWGG	1 cut(s)	698
BseDI	CCNNGG	2 cut(s)	697, 1177
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	4 cut(s)	169, 490, 914, 947
BseXI	GCAGC	3 cut(s)	58, 86, 1138
BsgI	GTGCAG	1 cut(s)	1145
BshFI	GGCC	3 cut(s)	392, 986, 1104
BshTI	ACCGGT	1 cut(s)	398
BsiHKCI	CYCGRG	1 cut(s)	886
BsiSI	CCGG	5 cut(s)	78, 177, 399, 498, 1187
BsmAI	GTCTC	3 cut(s)	22, 378, 1033
BsmBI	CGTCTC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	904
BsnI	GGCC	3 cut(s)	392, 986, 1104
Bso31I	GGTCTC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	886
Bsp13I	TCCGGA	2 cut(s)	176, 497
Bsp1407I	TGTACA	1 cut(s)	1196
Bsp143I	GATC	7 cut(s)	179, 219, 337, 500, 540, 739, 1202
BspACI	CCGC	2 cut(s)	1023, 1098
BspANI	GGCC	3 cut(s)	392, 986, 1104
BspCNI	CTCAG	1 cut(s)	32
BspEI	TCCGGA	2 cut(s)	176, 497
BspHI	TCATGA	1 cut(s)	622
BspMAI	CTGCAG	2 cut(s)	43, 76
BspOI	GCTAGC	1 cut(s)	293
BspPI	GGATC	5 cut(s)	187, 227, 508, 548, 734
BspTNI	GGTCTC	1 cut(s)	22
BsrFI	RCCGGY	2 cut(s)	77, 398
BsrGI	TGTACA	1 cut(s)	1196
BsrI	ACTGG	4 cut(s)	169, 490, 914, 947
BssAI	RCCGGY	2 cut(s)	77, 398
BssECI	CCNNGG	2 cut(s)	697, 1177
BssMI	GATC	7 cut(s)	179, 219, 337, 500, 540, 739, 1202
BssT1I	CCWWGG	1 cut(s)	1177
Bst2UI	CCWGG	1 cut(s)	698
Bst4CI	ACNGT	3 cut(s)	265, 586, 1154
Bst6I	CTCTTC	1 cut(s)	661
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstAUI	TGTACA	1 cut(s)	1196
BstC8I	GCNNGC	8 cut(s)	247, 259, 291, 568, 580, 994, 1003, 1102
BstDEI	CTNAG	4 cut(s)	12, 19, 126, 447
BstKTI	GATC	7 cut(s)	182, 222, 340, 503, 543, 742, 1205
BstMAI	GTCTC	3 cut(s)	22, 378, 1033
BstMBI	GATC	7 cut(s)	179, 219, 337, 500, 540, 739, 1202
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 998, 1002
BstNI	CCWGG	1 cut(s)	698
BstNSI	RCATGY	2 cut(s)	229, 550
BstSCI	CCNGG	1 cut(s)	696
BstSFI	CTRYAG	2 cut(s)	39, 72
BstV1I	GCAGC	3 cut(s)	58, 86, 1138
BstV2I	GAAGAC	5 cut(s)	99, 420, 597, 941, 1175
BstX2I	RGATCY	3 cut(s)	179, 337, 500
BstYI	RGATCY	3 cut(s)	179, 337, 500
BsuRI	GGCC	3 cut(s)	392, 986, 1104
BtrI	CACGTC	1 cut(s)	329
BtsI	GCAGTG	4 cut(s)	48, 267, 588, 960
BtsIMutI	CAGTG	7 cut(s)	27, 48, 261, 267, 582, 588, 960
Cac8I	GCNNGC	8 cut(s)	247, 259, 291, 568, 580, 994, 1003, 1102
CciI	TCATGA	1 cut(s)	622
Cfr10I	RCCGGY	2 cut(s)	77, 398
Cfr13I	GGNCC	1 cut(s)	614
CseI	GACGC	2 cut(s)	360, 985
Csp6I	GTAC	4 cut(s)	205, 526, 970, 1197
CspAI	ACCGGT	1 cut(s)	398
CviAII	CATG	9 cut(s)	61, 67, 226, 368, 547, 623, 1020, 1074, 1138
CviQI	GTAC	4 cut(s)	205, 526, 970, 1197
DdeI	CTNAG	4 cut(s)	12, 19, 126, 447
DpnI	GATC	7 cut(s)	181, 221, 339, 502, 542, 741, 1204
DpnII	GATC	7 cut(s)	179, 219, 337, 500, 540, 739, 1202
DraI	TTTAAA	1 cut(s)	321
DraIII	CACNNNGTG	2 cut(s)	299, 923
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	661
EarI	CTCTTC	1 cut(s)	661
Eco130I	CCWWGG	1 cut(s)	1177
Eco31I	GGTCTC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	614
Eco88I	CYCGRG	1 cut(s)	886
EcoRII	CCWGG	1 cut(s)	696
EcoT14I	CCWWGG	1 cut(s)	1177
ErhI	CCWWGG	1 cut(s)	1177
Esp3I	CGTCTC	1 cut(s)	378
FaeI	CATG	9 cut(s)	64, 70, 229, 371, 550, 626, 1023, 1077, 1141
FatI	CATG	9 cut(s)	60, 66, 225, 367, 546, 622, 1019, 1073, 1137
FblI	GTMKAC	1 cut(s)	1143
Fnu4HI	GCNGC	4 cut(s)	72, 75, 1098, 1127
Fsp4HI	GCNGC	4 cut(s)	72, 75, 1098, 1127
FspBI	CTAG	3 cut(s)	290, 1091, 1213
GluI	GCNGC	4 cut(s)	72, 75, 1098, 1127
HaeIII	GGCC	3 cut(s)	392, 986, 1104
HapII	CCGG	5 cut(s)	78, 177, 399, 498, 1187
HgaI	GACGC	2 cut(s)	360, 985
Hin1II	CATG	9 cut(s)	64, 70, 229, 371, 550, 626, 1023, 1077, 1141
HinfI	GANTC	7 cut(s)	130, 451, 839, 889, 946, 1081, 1114
HpaII	CCGG	5 cut(s)	78, 177, 399, 498, 1187
HphI	GGTGA	1 cut(s)	674
Hpy166II	GTNNAC	3 cut(s)	665, 1144, 1199
Hpy188I	TCNGA	1 cut(s)	1159
Hpy188III	TCNNGA	7 cut(s)	177, 332, 356, 498, 623, 775, 1091
Hpy8I	GTNNAC	3 cut(s)	665, 1144, 1199
Hpy99I	CGWCG	2 cut(s)	347, 1001
HpyAV	CCTTC	3 cut(s)	210, 531, 763
HpyCH4III	ACNGT	3 cut(s)	265, 586, 1154
HpyCH4IV	ACGT	3 cut(s)	121, 328, 442
HpyCH4V	TGCA	8 cut(s)	41, 74, 229, 272, 550, 593, 1073, 1126
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 998, 1002
HpyF3I	CTNAG	4 cut(s)	12, 19, 126, 447
HpySE526I	ACGT	3 cut(s)	121, 328, 442
Hsp92II	CATG	9 cut(s)	64, 70, 229, 371, 550, 626, 1023, 1077, 1141
Kpn2I	TCCGGA	2 cut(s)	176, 497
Kzo9I	GATC	7 cut(s)	179, 219, 337, 500, 540, 739, 1202
LmnI	GCTCC	1 cut(s)	958
Lsp1109I	GCAGC	3 cut(s)	58, 86, 1138
LweI	GCATC	2 cut(s)	15, 1084
MaeI	CTAG	3 cut(s)	290, 1091, 1213
MaeII	ACGT	3 cut(s)	121, 328, 442
MaeIII	GTNAC	2 cut(s)	265, 586
MalI	GATC	7 cut(s)	181, 221, 339, 502, 542, 741, 1204
MboI	GATC	7 cut(s)	179, 219, 337, 500, 540, 739, 1202
MboII	GAAGA	7 cut(s)	104, 347, 425, 597, 648, 946, 1175
MflI	RGATCY	3 cut(s)	179, 337, 500
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	6 cut(s)	52, 82, 403, 722, 816, 1048
MluNI	TGGCCA	1 cut(s)	392
MlyI	GAGTC	3 cut(s)	848, 898, 940
MmeI	TCCRAC	1 cut(s)	641
MnlI	CCTC	7 cut(s)	19, 134, 173, 455, 494, 870, 976
Mox20I	TGGCCA	1 cut(s)	392
MroI	TCCGGA	2 cut(s)	176, 497
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	3 cut(s)	50, 320, 1055
MslI	CAYNNNNRTG	4 cut(s)	65, 684, 686, 1018
Msp20I	TGGCCA	1 cut(s)	392
MspI	CCGG	5 cut(s)	78, 177, 399, 498, 1187
MspR9I	CCNGG	1 cut(s)	698
Mva1269I	GAATGC	1 cut(s)	904
MvaI	CCWGG	1 cut(s)	698
MwoI	GCNNNNNNNGC	3 cut(s)	299, 998, 1002
NdeII	GATC	7 cut(s)	179, 219, 337, 500, 540, 739, 1202
NheI	GCTAGC	1 cut(s)	289
NlaIII	CATG	9 cut(s)	64, 70, 229, 371, 550, 626, 1023, 1077, 1141
NmeAIII	GCCGAG	2 cut(s)	233, 554
NmuCI	GTSAC	2 cut(s)	265, 586
NspI	RCATGY	2 cut(s)	229, 550
OliI	CACNNNNGTG	1 cut(s)	686
PaeR7I	CTCGAG	1 cut(s)	886
PagI	TCATGA	1 cut(s)	622
PctI	GAATGC	1 cut(s)	904
PfeI	GAWTC	4 cut(s)	130, 451, 1081, 1114
PinAI	ACCGGT	1 cut(s)	398
PkrI	GCNGC	4 cut(s)	73, 76, 1099, 1128
PleI	GAGTC	3 cut(s)	847, 897, 940
PpsI	GAGTC	3 cut(s)	847, 897, 940
Psp6I	CCWGG	1 cut(s)	696
PspGI	CCWGG	1 cut(s)	696
PspPI	GGNCC	1 cut(s)	614
PspXI	VCTCGAGB	1 cut(s)	886
PstI	CTGCAG	2 cut(s)	43, 76
PsuI	RGATCY	3 cut(s)	179, 337, 500
RsaI	GTAC	4 cut(s)	206, 527, 971, 1198
RsaNI	GTAC	4 cut(s)	205, 526, 970, 1197
RseI	CAYNNNNRTG	4 cut(s)	65, 684, 686, 1018
SaqAI	TTAA	3 cut(s)	50, 320, 1055
SatI	GCNGC	4 cut(s)	72, 75, 1098, 1127
Sau3AI	GATC	7 cut(s)	179, 219, 337, 500, 540, 739, 1202
Sau96I	GGNCC	1 cut(s)	614
ScaI	AGTACT	2 cut(s)	206, 527
SchI	GAGTC	3 cut(s)	848, 898, 940
ScrFI	CCNGG	1 cut(s)	698
SfaNI	GCATC	2 cut(s)	15, 1084
SfcI	CTRYAG	2 cut(s)	39, 72
Sfr274I	CTCGAG	1 cut(s)	886
SinI	GGWCC	1 cut(s)	614
SlaI	CTCGAG	1 cut(s)	886
SmiMI	CAYNNNNRTG	4 cut(s)	65, 684, 686, 1018
SmlI	CTYRAG	2 cut(s)	609, 886
SmoI	CTYRAG	2 cut(s)	609, 886
Sse9I	AATT	6 cut(s)	52, 82, 403, 722, 816, 1048
SsiI	CCGC	2 cut(s)	1023, 1098
SspI	AATATT	2 cut(s)	310, 811
SspMI	CTAG	3 cut(s)	290, 1091, 1213
StyD4I	CCNGG	1 cut(s)	696
StyI	CCWWGG	1 cut(s)	1177
TaaI	ACNGT	3 cut(s)	265, 586, 1154
TaiI	ACGT	3 cut(s)	124, 331, 445
TasI	AATT	6 cut(s)	52, 82, 403, 722, 816, 1048
TatI	WGTACW	3 cut(s)	204, 525, 1196
TauI	GCSGC	1 cut(s)	1100
TfiI	GAWTC	4 cut(s)	130, 451, 1081, 1114
Tru1I	TTAA	3 cut(s)	50, 320, 1055
Tru9I	TTAA	3 cut(s)	50, 320, 1055
TscAI	CASTG	7 cut(s)	27, 48, 268, 274, 589, 595, 967
TseFI	GTSAC	2 cut(s)	265, 586
TseI	GCWGC	3 cut(s)	71, 74, 1126
Tsp45I	GTSAC	2 cut(s)	265, 586
TspDTI	ATGAA	6 cut(s)	49, 105, 426, 642, 1077, 1126
TspGWI	ACGGA	3 cut(s)	153, 395, 474
TspRI	CASTG	7 cut(s)	27, 48, 268, 274, 589, 595, 967
VpaK11BI	GGWCC	1 cut(s)	614
XapI	RAATTY	1 cut(s)	52
XbaI	TCTAGA	1 cut(s)	1090
XceI	RCATGY	2 cut(s)	229, 550
XhoI	CTCGAG	1 cut(s)	886
XmiI	GTMKAC	1 cut(s)	1143
XspI	CTAG	3 cut(s)	290, 1091, 1213
ZrmI	AGTACT	2 cut(s)	206, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.