Rmu_sc0000942.1_g000004

Phosphopantothenate-cysteine ligase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000942.1
N/A
Physical Location & Seq
Forward (+)
25067 .. 25318
252 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
atgtctgaacagctagaaacagattcaaagatcctgttacagaaggctgatatgtctcttaggaagtacaagatgcatatggtagtagccaatgaaattttgagccaagacgaagaggtcgtagttgtcaccagcaatgaaaagatttcagttcgccgaaacaagtctctgggtgttgatgatgtggagagcgcccttattgagcttcttgtggagaggcattcagcttatgttgagaattctgatctatga

Protein Analysis

83

Amino Acids

9.45

Weight (kDa)

4.79

Isoelectric Point (pI)

75.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AclWI GGATC 1 cut(s) 25
AcsI RAATTY 2 cut(s) 96, 238
AfaI GTAC 1 cut(s) 68
AgsI TTSAA 1 cut(s) 27
AluBI AGCT 3 cut(s) 13, 205, 227
AluI AGCT 3 cut(s) 13, 205, 227
Alw26I GTCTC 2 cut(s) 60, 171
AlwI GGATC 1 cut(s) 25
ApoI RAATTY 2 cut(s) 96, 238
AspLEI GCGC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 60, 171
BfaI CTAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 195
BmsI GCATC 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 142
BseMI GCAATG 1 cut(s) 142
BsmAI GTCTC 2 cut(s) 60, 171
BsmI GAATGC 1 cut(s) 220
Bsp143I GATC 2 cut(s) 30, 244
BspPI GGATC 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 142
BssMI GATC 2 cut(s) 30, 244
Bst6I CTCTTC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 2 cut(s) 33, 247
BstMAI GTCTC 2 cut(s) 60, 171
BstMBI GATC 2 cut(s) 30, 244
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
CfoI GCGC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 67
CviJI RGCY 6 cut(s) 13, 47, 89, 105, 205, 227
CviKI_1 RGCY 6 cut(s) 13, 47, 89, 105, 205, 227
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 1 cut(s) 59
DpnI GATC 2 cut(s) 32, 246
DpnII GATC 2 cut(s) 30, 244
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 238
EcoT22I ATGCAT 1 cut(s) 78
FaiI YATR 5 cut(s) 53, 78, 80, 231, 250
FauNDI CATATG 1 cut(s) 78
FspBI CTAG 1 cut(s) 14
GlaI GCGC 1 cut(s) 193
HaeII RGCGCY 1 cut(s) 195
HhaI GCGC 1 cut(s) 194
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 1 cut(s) 23
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 7, 244
HpyAV CCTTC 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 59
HspAI GCGC 1 cut(s) 192
Kzo9I GATC 2 cut(s) 30, 244
LpnPI CCDG 3 cut(s) 47, 145, 155
LweI GCATC 1 cut(s) 63
MaeI CTAG 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 36, 127
MalI GATC 2 cut(s) 32, 246
MboI GATC 2 cut(s) 30, 244
MboII GAAGA 1 cut(s) 125
MflI RGATCY 1 cut(s) 30
MluCI AATT 2 cut(s) 96, 238
MnlI CCTC 2 cut(s) 109, 210
Mph1103I ATGCAT 1 cut(s) 78
Mva1269I GAATGC 1 cut(s) 220
NdeI CATATG 1 cut(s) 78
NdeII GATC 2 cut(s) 30, 244
NmuCI GTSAC 1 cut(s) 127
NsiI ATGCAT 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
Sau3AI GATC 2 cut(s) 30, 244
SetI ASST 4 cut(s) 15, 120, 207, 229
SfaNI GCATC 1 cut(s) 63
SgeI CNNG 8 cut(s) 26, 46, 82, 119, 144, 175, 182, 221
Sse9I AATT 2 cut(s) 96, 238
SspMI CTAG 1 cut(s) 14
TasI AATT 2 cut(s) 96, 238
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 1 cut(s) 23
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 108, 153
XapI RAATTY 2 cut(s) 96, 238
XspI CTAG 1 cut(s) 14
Zsp2I ATGCAT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.