Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000948.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

204231 .. 209010

Gene Structure 4780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atggtggatctcagccccaagtctgagatctcattcttccagatgttcttgtgcagtgccttcactacttgttttgccgagttctgtaccattcttttggacaccgctaaagttaggctccagctccaaaagaaagcagttgtaggggatgcagctgatgctcctaaatataggggcttgttgggtactatggctaccattgctagggaagaaggtttagcagctccttggaatagtataattccaggattacagcgccaatgcatctatggaggcttaagaattagtgctctggctatcatagtggctaatccaacggaccttgtcaaggttcaactccaagctgaaggaaaattgcccggcggagttcctaggcattactctggagctaaagataattatttcactatagcgaggcaggaaggtttaggagctctatggactgggctgggaccaaatgtagcacgaaatgctattataaatgctgctgagctaggtagttatgatcaagtggaggaggttcttactgagggtaaacaaaaggatgtacttaaagctgccgatgacaatggagctcaaattccattcatgatggcaagtgatgggatcaaacaacgagatattgtgcaccaggtcacatcctcaataactggatcaataatagttgaggacgtgatttatgaaactgataatggtgatatcagtcgcattctaccacccagagatttgacatttcgtcgccttgtcttccaaagaagtgagggtctagttcagtctgaagctcttctgtcagaggaaggatctaaaaataaaattgttggtgagagtgagaaggaggaaaggagaagcagagtttggagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

287

Amino Acids

31.43

Weight (kDa)

5.63

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	9 - 96	7.4e-11	Mitochondrial carrier protein
Mito_carr	PF00153	96 - 177	2.3e-15	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	479
AciI	CCGC	2 cut(s)	105, 363
AclWI	GGATC	4 cut(s)	15, 614, 661, 808
AcsI	RAATTY	1 cut(s)	579
AcuI	CTGAAG	2 cut(s)	366, 798
AfaI	GTAC	3 cut(s)	88, 187, 549
AfiI	CCNNNNNNNGG	2 cut(s)	204, 328
AflII	CTTAAG	1 cut(s)	277
AgsI	TTSAA	1 cut(s)	335
AhdI	GACNNNNNGTC	1 cut(s)	735
AjiI	CACGTC	1 cut(s)	673
AjnI	CCWGG	2 cut(s)	244, 630
AjuI	GAANNNNNNNTTGG	1 cut(s)	838
Alw21I	GWGCWC	4 cut(s)	292, 436, 577, 630
Alw44I	GTGCAC	1 cut(s)	626
AlwI	GGATC	4 cut(s)	15, 614, 661, 808
ApaLI	GTGCAC	1 cut(s)	626
ApeKI	GCWGC	4 cut(s)	152, 221, 485, 557
ApoI	RAATTY	1 cut(s)	579
Asp700I	GAANNNNTTC	1 cut(s)	783
AspA2I	CCTAGG	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	2 cut(s)	319, 452
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	2 cut(s)	707, 833
AvaII	GGWCC	2 cut(s)	319, 452
AvrII	CCTAGG	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	630
BanII	GRGCYC	2 cut(s)	436, 577
BbsI	GAAGAC	1 cut(s)	739
Bbv12I	GWGCWC	4 cut(s)	292, 436, 577, 630
BbvI	GCAGC	4 cut(s)	164, 233, 472, 544
BccI	CCATC	2 cut(s)	586, 596
BciT130I	CCWGG	2 cut(s)	246, 632
BclI	TGATCA	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	360
BfaI	CTAG	4 cut(s)	204, 372, 494, 767
BfmI	CTRYAG	1 cut(s)	408
BfoI	RGCGCY	1 cut(s)	259
BfrI	CTTAAG	1 cut(s)	277
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	4 cut(s)	153, 222, 486, 558
BlnI	CCTAGG	1 cut(s)	371
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	4 cut(s)	154, 223, 487, 559
Bme1390I	CCNGG	3 cut(s)	246, 360, 632
Bme18I	GGWCC	2 cut(s)	319, 452
BmeRI	GACNNNNNGTC	1 cut(s)	735
BmgBI	CACGTC	1 cut(s)	673
BmgT120I	GGNCC	2 cut(s)	319, 452
BmiI	GGNNCC	2 cut(s)	119, 453
BmrFI	CCNGG	3 cut(s)	246, 360, 632
BmrI	ACTGGG	1 cut(s)	453
BmsI	GCATC	3 cut(s)	139, 148, 273
BmuI	ACTGGG	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	739
BpmI	CTGGAG	2 cut(s)	104, 405
Bpu1102I	GCTNAGC	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	227, 371
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 328
Bse1I	ACTGG	2 cut(s)	448, 655
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	246, 632
BseDI	CCNNGG	2 cut(s)	227, 371
BseGI	GGATG	3 cut(s)	154, 550, 638
BseLI	CCNNNNNNNGG	2 cut(s)	204, 328
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	4 cut(s)	15, 25, 480, 519
BseNI	ACTGG	2 cut(s)	448, 655
BseRI	GAGGAG	1 cut(s)	530
BseSI	GKGCMC	1 cut(s)	630
BseXI	GCAGC	4 cut(s)	164, 233, 472, 544
BseYI	CCCAGC	1 cut(s)	448
BsgI	GTGCAG	1 cut(s)	73
BsiHKAI	GWGCWC	4 cut(s)	292, 436, 577, 630
BsiSI	CCGG	1 cut(s)	360
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	2 cut(s)	204, 328
BsmFI	GGGAC	1 cut(s)	465
BsmI	GAATGC	1 cut(s)	708
Bsp1286I	GDGCHC	4 cut(s)	292, 436, 577, 630
Bsp143I	GATC	6 cut(s)	7, 27, 505, 606, 653, 800
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	2 cut(s)	105, 363
BspCNI	CTCAG	4 cut(s)	16, 24, 481, 520
BspHI	TCATGA	1 cut(s)	588
BspLI	GGNNCC	2 cut(s)	119, 453
BspPI	GGATC	4 cut(s)	15, 614, 661, 808
BspQI	GCTCTTC	1 cut(s)	789
BspTI	CTTAAG	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	448, 655
BssECI	CCNNGG	2 cut(s)	227, 371
BssMI	GATC	6 cut(s)	7, 27, 505, 606, 653, 800
BssT1I	CCWWGG	2 cut(s)	227, 371
Bst2UI	CCWGG	2 cut(s)	246, 632
Bst6I	CTCTTC	1 cut(s)	789
BstAFI	CTTAAG	1 cut(s)	277
BstAPI	GCANNNNNTGC	2 cut(s)	158, 470
BstDEI	CTNAG	4 cut(s)	11, 24, 489, 528
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	3 cut(s)	154, 550, 638
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	6 cut(s)	10, 30, 508, 609, 656, 803
BstMBI	GATC	6 cut(s)	7, 27, 505, 606, 653, 800
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 200, 470
BstNI	CCWGG	2 cut(s)	246, 632
BstSCI	CCNGG	3 cut(s)	244, 358, 630
BstSFI	CTRYAG	1 cut(s)	408
BstSLI	GKGCMC	1 cut(s)	630
BstV1I	GCAGC	4 cut(s)	164, 233, 472, 544
BstV2I	GAAGAC	1 cut(s)	739
BstX2I	RGATCY	3 cut(s)	7, 27, 800
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	3 cut(s)	7, 27, 800
BtrI	CACGTC	1 cut(s)	673
BtsCI	GGATG	3 cut(s)	154, 550, 638
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	61
CciI	TCATGA	1 cut(s)	588
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	319, 452
CsiI	ACCWGGT	1 cut(s)	630
Csp6I	GTAC	3 cut(s)	87, 186, 548
CviAII	CATG	1 cut(s)	589
CviQI	GTAC	3 cut(s)	87, 186, 548
DdeI	CTNAG	4 cut(s)	11, 24, 489, 528
DpnI	GATC	6 cut(s)	9, 29, 507, 608, 655, 802
DpnII	GATC	6 cut(s)	7, 27, 505, 606, 653, 800
DriI	GACNNNNNGTC	1 cut(s)	735
Eam1104I	CTCTTC	1 cut(s)	789
Eam1105I	GACNNNNNGTC	1 cut(s)	735
EarI	CTCTTC	1 cut(s)	789
EciI	GGCGGA	1 cut(s)	378
Ecl136II	GAGCTC	2 cut(s)	434, 575
Eco130I	CCWWGG	2 cut(s)	227, 371
Eco24I	GRGCYC	2 cut(s)	436, 577
Eco32I	GATATC	1 cut(s)	700
Eco47I	GGWCC	2 cut(s)	319, 452
Eco53kI	GAGCTC	2 cut(s)	434, 575
Eco57I	CTGAAG	2 cut(s)	366, 798
EcoICRI	GAGCTC	2 cut(s)	434, 575
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	244, 630
EcoRV	GATATC	1 cut(s)	700
EcoT14I	CCWWGG	2 cut(s)	227, 371
EcoT22I	ATGCAT	1 cut(s)	266
EcoT38I	GRGCYC	2 cut(s)	436, 577
ErhI	CCWWGG	2 cut(s)	227, 371
FaeI	CATG	1 cut(s)	592
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	1 cut(s)	588
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	4 cut(s)	153, 222, 486, 558
FokI	GGATG	3 cut(s)	161, 557, 625
FriOI	GRGCYC	2 cut(s)	436, 577
Fsp4HI	GCNGC	4 cut(s)	153, 222, 486, 558
FspBI	CTAG	4 cut(s)	204, 372, 494, 767
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	4 cut(s)	153, 222, 486, 558
GsaI	CCCAGC	1 cut(s)	452
GsuI	CTGGAG	2 cut(s)	104, 405
HaeII	RGCGCY	1 cut(s)	259
HapII	CCGG	1 cut(s)	360
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	592
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HpaII	CCGG	1 cut(s)	360
HphI	GGTGA	2 cut(s)	707, 833
Hpy166II	GTNNAC	2 cut(s)	536, 628
Hpy188I	TCNGA	3 cut(s)	25, 778, 793
Hpy188III	TCNNGA	3 cut(s)	40, 384, 589
Hpy8I	GTNNAC	2 cut(s)	536, 628
Hpy99I	CGWCG	1 cut(s)	741
HpyAV	CCTTC	6 cut(s)	70, 206, 341, 416, 791, 826
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	4 cut(s)	54, 152, 264, 628
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 200, 470
HpyF3I	CTNAG	4 cut(s)	11, 24, 489, 528
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	1 cut(s)	592
HspAI	GCGC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	6 cut(s)	7, 27, 505, 606, 653, 800
LguI	GCTCTTC	1 cut(s)	789
LmnI	GCTCC	7 cut(s)	123, 129, 166, 229, 386, 431, 572
Lsp1109I	GCAGC	4 cut(s)	164, 233, 472, 544
LweI	GCATC	3 cut(s)	139, 148, 273
MabI	ACCWGGT	1 cut(s)	630
MaeI	CTAG	4 cut(s)	204, 372, 494, 767
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	1 cut(s)	634
MalI	GATC	6 cut(s)	9, 29, 507, 608, 655, 802
MboI	GATC	6 cut(s)	7, 27, 505, 606, 653, 800
MboII	GAAGA	4 cut(s)	28, 221, 739, 776
MflI	RGATCY	3 cut(s)	7, 27, 800
MhlI	GDGCHC	4 cut(s)	292, 436, 577, 630
MluCI	AATT	6 cut(s)	240, 282, 353, 397, 579, 813
MmeI	TCCRAC	1 cut(s)	338
Mph1103I	ATGCAT	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	783
MseI	TTAA	2 cut(s)	278, 552
MspA1I	CMGCKG	1 cut(s)	155
MspCI	CTTAAG	1 cut(s)	277
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	3 cut(s)	246, 360, 632
Mva1269I	GAATGC	1 cut(s)	708
MvaI	CCWGG	2 cut(s)	246, 632
MwoI	GCNNNNNNNGC	3 cut(s)	158, 200, 470
NciI	CCSGG	1 cut(s)	360
NdeII	GATC	6 cut(s)	7, 27, 505, 606, 653, 800
NlaIII	CATG	1 cut(s)	592
NlaIV	GGNNCC	2 cut(s)	119, 453
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	634
NsiI	ATGCAT	1 cut(s)	266
PagI	TCATGA	1 cut(s)	588
PciSI	GCTCTTC	1 cut(s)	789
PctI	GAATGC	1 cut(s)	708
PdmI	GAANNNNTTC	1 cut(s)	783
PflFI	GACNNNGTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	4 cut(s)	154, 223, 487, 559
PsiI	TTATAA	1 cut(s)	479
Psp124BI	GAGCTC	2 cut(s)	436, 577
Psp6I	CCWGG	2 cut(s)	244, 630
PspFI	CCCAGC	1 cut(s)	448
PspGI	CCWGG	2 cut(s)	244, 630
PspN4I	GGNNCC	2 cut(s)	119, 453
PspPI	GGNCC	2 cut(s)	319, 452
PsuI	RGATCY	3 cut(s)	7, 27, 800
PsyI	GACNNNGTC	1 cut(s)	323
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	3 cut(s)	88, 187, 549
RsaNI	GTAC	3 cut(s)	87, 186, 548
SacI	GAGCTC	2 cut(s)	436, 577
SapI	GCTCTTC	1 cut(s)	789
SaqAI	TTAA	2 cut(s)	278, 552
SatI	GCNGC	4 cut(s)	153, 222, 486, 558
Sau3AI	GATC	6 cut(s)	7, 27, 505, 606, 653, 800
Sau96I	GGNCC	2 cut(s)	319, 452
ScrFI	CCNGG	3 cut(s)	246, 360, 632
SduI	GDGCHC	4 cut(s)	292, 436, 577, 630
SexAI	ACCWGGT	1 cut(s)	630
SfaNI	GCATC	3 cut(s)	139, 148, 273
SfcI	CTRYAG	1 cut(s)	408
SinI	GGWCC	2 cut(s)	319, 452
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	6 cut(s)	240, 282, 353, 397, 579, 813
SsiI	CCGC	2 cut(s)	105, 363
SspMI	CTAG	4 cut(s)	204, 372, 494, 767
SstI	GAGCTC	2 cut(s)	436, 577
StyD4I	CCNGG	3 cut(s)	244, 358, 630
StyI	CCWWGG	2 cut(s)	227, 371
TaiI	ACGT	1 cut(s)	675
TasI	AATT	6 cut(s)	240, 282, 353, 397, 579, 813
TatI	WGTACW	1 cut(s)	547
Tru1I	TTAA	2 cut(s)	278, 552
Tru9I	TTAA	2 cut(s)	278, 552
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	4 cut(s)	152, 221, 485, 557
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	2 cut(s)	577, 696
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	61
Tth111I	GACNNNGTC	1 cut(s)	323
Vha464I	CTTAAG	1 cut(s)	277
VneI	GTGCAC	1 cut(s)	626
VpaK11BI	GGWCC	2 cut(s)	319, 452
XagI	CCTNNNNNAGG	1 cut(s)	326
XapI	RAATTY	1 cut(s)	579
XcmI	CCANNNNNNNNNTGG	1 cut(s)	266
XmaJI	CCTAGG	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	783
XspI	CTAG	4 cut(s)	204, 372, 494, 767
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.