Rmu_sc0000949.1_g000006

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000949.1
N/A
Physical Location & Seq
Reverse (-)
28914 .. 29681
768 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 420 bp
atgtcatattgttgcccattcttcaaggttttgttctcgtggagtagggaccatccaccatggccagcattgttagttaagagttgtcattgtggctggaattccttgagtgaggctctgtggaacggtgtgcccgtatcagcatggctgcaacatggggaccagaaaatcaatgccgacttggtggagagaattgggctgggagtgtgggttaagagttggggttggggtgaggaggagatggtggtgaaagcagaggatattgcagtgagggttaaggagattatgggaaatgactcattgagattgcaagcactacacattaaagaagaggctagactggcagtaggagatactggtagttctacaaagagactcactgctctcattgagacatggaaagagtttcgagttagttaa

Protein Analysis

139

Amino Acids

15.77

Weight (kDa)

6.42

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 62
AcsI RAATTY 1 cut(s) 100
AgsI TTSAA 1 cut(s) 25
Alw26I GTCTC 2 cut(s) 367, 386
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 148
ApoI RAATTY 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 49, 160
AsuHPI GGTGA 2 cut(s) 242, 259
AvaII GGWCC 2 cut(s) 49, 160
BaeGI GKGCMC 1 cut(s) 135
BalI TGGCCA 1 cut(s) 64
BauI CACGAG 1 cut(s) 37
BbvI GCAGC 1 cut(s) 135
BccI CCATC 2 cut(s) 60, 235
BcoDI GTCTC 2 cut(s) 367, 386
BfaI CTAG 1 cut(s) 336
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme18I GGWCC 2 cut(s) 49, 160
BmgT120I GGNCC 2 cut(s) 49, 160
BmiI GGNNCC 2 cut(s) 50, 161
BplI GAGNNNNNCTC 2 cut(s) 100, 132
BpuEI CTTGAG 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 59
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bse1I ACTGG 2 cut(s) 345, 361
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 52
BseNI ACTGG 2 cut(s) 345, 361
BseRI GAGGAG 2 cut(s) 248, 251
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 1 cut(s) 135
BseYI CCCAGC 1 cut(s) 199
BshFI GGCC 1 cut(s) 64
BslFI GGGAC 2 cut(s) 62, 173
BsmAI GTCTC 2 cut(s) 367, 386
BsmFI GGGAC 2 cut(s) 62, 173
BsnI GGCC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 135
Bsp19I CCATGG 1 cut(s) 59
BspANI GGCC 1 cut(s) 64
BspLI GGNNCC 2 cut(s) 50, 161
BsrI ACTGG 2 cut(s) 345, 361
BssECI CCNNGG 1 cut(s) 59
BssSI CACGAG 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 59
Bst2BI CACGAG 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 324
BstC8I GCNNGC 2 cut(s) 66, 312
BstDSI CCRYGG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 52
BstMAI GTCTC 2 cut(s) 367, 386
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstSLI GKGCMC 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 135
BsuRI GGCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 59
BtsCI GGATG 1 cut(s) 52
BtsI GCAGTG 2 cut(s) 273, 378
BtsIMutI CAGTG 2 cut(s) 273, 378
Cac8I GCNNGC 2 cut(s) 66, 312
Cfr13I GGNCC 2 cut(s) 49, 160
CviAII CATG 4 cut(s) 60, 144, 155, 396
CviJI RGCY 6 cut(s) 64, 96, 116, 148, 199, 335
CviKI_1 RGCY 6 cut(s) 64, 96, 116, 148, 199, 335
EaeI YGGCCR 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 59
Eco47I GGWCC 2 cut(s) 49, 160
EcoRI GAATTC 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
FaeI CATG 4 cut(s) 63, 147, 158, 399
FaiI YATR 6 cut(s) 7, 61, 145, 156, 287, 397
FaqI GGGAC 2 cut(s) 62, 173
FatI CATG 4 cut(s) 59, 143, 154, 395
Fnu4HI GCNGC 1 cut(s) 149
FokI GGATG 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 149
FspBI CTAG 1 cut(s) 336
GluI GCNGC 1 cut(s) 149
GsaI CCCAGC 1 cut(s) 203
HaeIII GGCC 1 cut(s) 64
Hin1II CATG 4 cut(s) 63, 147, 158, 399
HinfI GANTC 2 cut(s) 296, 375
HphI GGTGA 2 cut(s) 242, 259
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 3 cut(s) 151, 266, 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
Hsp92II CATG 4 cut(s) 63, 147, 158, 399
LpnPI CCDG 6 cut(s) 78, 82, 176, 185, 326, 342
Lsp1109I GCAGC 1 cut(s) 135
MaeI CTAG 1 cut(s) 336
MboII GAAGA 2 cut(s) 13, 341
MhlI GDGCHC 1 cut(s) 135
MlsI TGGCCA 1 cut(s) 64
MluCI AATT 2 cut(s) 100, 192
MluNI TGGCCA 1 cut(s) 64
MlyI GAGTC 2 cut(s) 290, 369
MnlI CCTC 6 cut(s) 106, 226, 229, 250, 264, 325
Mox20I TGGCCA 1 cut(s) 64
MscI TGGCCA 1 cut(s) 64
MseI TTAA 5 cut(s) 78, 213, 276, 324, 418
Msp20I TGGCCA 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 341
NcoI CCATGG 1 cut(s) 59
NlaIII CATG 4 cut(s) 63, 147, 158, 399
NlaIV GGNNCC 2 cut(s) 50, 161
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PkrI GCNGC 1 cut(s) 150
PleI GAGTC 2 cut(s) 290, 369
PpsI GAGTC 2 cut(s) 290, 369
PspFI CCCAGC 1 cut(s) 199
PspN4I GGNNCC 2 cut(s) 50, 161
PspPI GGNCC 2 cut(s) 49, 160
SaqAI TTAA 5 cut(s) 78, 213, 276, 324, 418
SatI GCNGC 1 cut(s) 149
Sau96I GGNCC 2 cut(s) 49, 160
SchI GAGTC 2 cut(s) 290, 369
SduI GDGCHC 1 cut(s) 135
SetI ASST 1 cut(s) 30
SinI GGWCC 2 cut(s) 49, 160
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 2 cut(s) 100, 192
SspMI CTAG 1 cut(s) 336
StyI CCWWGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 409
TasI AATT 2 cut(s) 100, 192
Tru1I TTAA 5 cut(s) 78, 213, 276, 324, 418
Tru9I TTAA 5 cut(s) 78, 213, 276, 324, 418
TscAI CASTG 2 cut(s) 273, 385
TseI GCWGC 1 cut(s) 148
TspRI CASTG 2 cut(s) 273, 385
VpaK11BI GGWCC 2 cut(s) 49, 160
XapI RAATTY 1 cut(s) 100
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.